diff --git a/cran-comments/cran-comments-v0_8_29.md b/cran-comments/cran-comments-v0_8_29.md new file mode 100644 index 00000000..74de2e6c --- /dev/null +++ b/cran-comments/cran-comments-v0_8_29.md @@ -0,0 +1,9 @@ +* This updates the existing FSA package on CRAN by removing the dependency on the epitools package (related to e-mail from Kurt Hornik on 7-Mar-20). + +## Notes +* There may be a note about "fishR" being misspelled in the description. This is not a misspelling. +* On [CRAN](https://cran.r-project.org/web/checks/check_results_FSA.html), there is a note in the previous version about a missing `RMark` package for the "r-patched-solaris-x86" flavor. Again (as with previous versions), I am not sure what to do about this note. + +## Testing Environments +* My Windows machine. +* Win Builder -- old-release, release, and development. diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 2a5954bc..74cb62f4 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -76,7 +76,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/authors.html b/docs/authors.html index 61dab9e2..a66dcb06 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -76,7 +76,7 @@ FSA - 0.8.28 + 0.8.29 @@ -121,13 +121,13 @@

Citation

Ogle DH, Wheeler P, Dinno A (2020). FSA: Fisheries Stock Analysis. -R package version 0.8.28, https://github.com/droglenc/FSA. +R package version 0.8.29, https://github.com/droglenc/FSA. 

@Manual{,
   title = {FSA: Fisheries Stock Analysis},
   author = {Derek H. Ogle and Powell Wheeler and Alexis Dinno},
   year = {2020},
-  note = {R package version 0.8.28},
+  note = {R package version 0.8.29},
   url = {https://github.com/droglenc/FSA},
 }
diff --git a/docs/index.html b/docs/index.html index 955bd4fb..7b8410f3 100644 --- a/docs/index.html +++ b/docs/index.html @@ -39,7 +39,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/news/index.html b/docs/news/index.html index d1066b68..983bde57 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -76,7 +76,7 @@ FSA - 0.8.28 + 0.8.29 @@ -119,9 +119,21 @@

Changelog

Source: NEWS.md -
+

-FSA 0.8.28 ongoing Unreleased +FSA 0.8.29 8-Mar-20 Unreleased +

+ +
+
+

+FSA 0.8.28 28-Feb-20 Unreleased

diff --git a/docs/reference/ChinookArg.html b/docs/reference/ChinookArg.html index fae2cdcb..e5b75911 100644 --- a/docs/reference/ChinookArg.html +++ b/docs/reference/ChinookArg.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29
diff --git a/docs/reference/CodNorwegian.html b/docs/reference/CodNorwegian.html index 3ae0b95b..2a3b4893 100644 --- a/docs/reference/CodNorwegian.html +++ b/docs/reference/CodNorwegian.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/CutthroatAL.html b/docs/reference/CutthroatAL.html index 9dab797c..b2986460 100644 --- a/docs/reference/CutthroatAL.html +++ b/docs/reference/CutthroatAL.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/Ecoli.html b/docs/reference/Ecoli.html index 1c6b86f3..256c3af2 100644 --- a/docs/reference/Ecoli.html +++ b/docs/reference/Ecoli.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/FSA-internals.html b/docs/reference/FSA-internals.html index 194339fc..a6e26e2f 100644 --- a/docs/reference/FSA-internals.html +++ b/docs/reference/FSA-internals.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/FSA.html b/docs/reference/FSA.html index 72036fc9..5e22803d 100644 --- a/docs/reference/FSA.html +++ b/docs/reference/FSA.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/FSAUtils.html b/docs/reference/FSAUtils.html index e9262108..0a03edfb 100644 --- a/docs/reference/FSAUtils.html +++ b/docs/reference/FSAUtils.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/Mirex.html b/docs/reference/Mirex.html index 6854fce5..2ca5294e 100644 --- a/docs/reference/Mirex.html +++ b/docs/reference/Mirex.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/PSDlit.html b/docs/reference/PSDlit.html index ed8bc02f..9dee7dc5 100644 --- a/docs/reference/PSDlit.html +++ b/docs/reference/PSDlit.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/PikeNY.html b/docs/reference/PikeNY.html index 6b56d073..9170172c 100644 --- a/docs/reference/PikeNY.html +++ b/docs/reference/PikeNY.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/PikeNYPartial1.html b/docs/reference/PikeNYPartial1.html index 23dba9c6..4e908af6 100644 --- a/docs/reference/PikeNYPartial1.html +++ b/docs/reference/PikeNYPartial1.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/SMBassLS.html b/docs/reference/SMBassLS.html index 20e353b3..a1ed4fc5 100644 --- a/docs/reference/SMBassLS.html +++ b/docs/reference/SMBassLS.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/SMBassWB.html b/docs/reference/SMBassWB.html index 146d733d..121156f0 100644 --- a/docs/reference/SMBassWB.html +++ b/docs/reference/SMBassWB.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/Schnute.html b/docs/reference/Schnute.html index 99e282b0..76f915a9 100644 --- a/docs/reference/Schnute.html +++ b/docs/reference/Schnute.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/SpotVA1.html b/docs/reference/SpotVA1.html index 25016264..68e1d293 100644 --- a/docs/reference/SpotVA1.html +++ b/docs/reference/SpotVA1.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/Subset.html b/docs/reference/Subset.html index 96266c62..97e959d5 100644 --- a/docs/reference/Subset.html +++ b/docs/reference/Subset.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/Summarize.html b/docs/reference/Summarize.html index 0f982f7e..22530b1c 100644 --- a/docs/reference/Summarize.html +++ b/docs/reference/Summarize.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/WR79.html b/docs/reference/WR79.html index 8694d317..c1256624 100644 --- a/docs/reference/WR79.html +++ b/docs/reference/WR79.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/WSlit.html b/docs/reference/WSlit.html index ba12bb6d..5ae68d0e 100644 --- a/docs/reference/WSlit.html +++ b/docs/reference/WSlit.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/WhitefishLC.html b/docs/reference/WhitefishLC.html index 05bcc5b8..ff4da4de 100644 --- a/docs/reference/WhitefishLC.html +++ b/docs/reference/WhitefishLC.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/addZeroCatch.html b/docs/reference/addZeroCatch.html index c1ac97f2..8d47265a 100644 --- a/docs/reference/addZeroCatch.html +++ b/docs/reference/addZeroCatch.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/ageBias.html b/docs/reference/ageBias.html index 1ed00b88..c300da49 100644 --- a/docs/reference/ageBias.html +++ b/docs/reference/ageBias.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/agePrecision.html b/docs/reference/agePrecision.html index d5a02e53..4da2bd7e 100644 --- a/docs/reference/agePrecision.html +++ b/docs/reference/agePrecision.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/alkAgeDist.html b/docs/reference/alkAgeDist.html index fa84a097..8efbcf02 100644 --- a/docs/reference/alkAgeDist.html +++ b/docs/reference/alkAgeDist.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/alkIndivAge.html b/docs/reference/alkIndivAge.html index 34180a4b..c7f4bb9e 100644 --- a/docs/reference/alkIndivAge.html +++ b/docs/reference/alkIndivAge.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/alkMeanVar.html b/docs/reference/alkMeanVar.html index d2ae8795..ea3a2070 100644 --- a/docs/reference/alkMeanVar.html +++ b/docs/reference/alkMeanVar.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/alkPlot.html b/docs/reference/alkPlot.html index e5725280..37418ba0 100644 --- a/docs/reference/alkPlot.html +++ b/docs/reference/alkPlot.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 diff --git a/docs/reference/binCI.html b/docs/reference/binCI.html index 7c9a76fa..e7eeb158 100644 --- a/docs/reference/binCI.html +++ b/docs/reference/binCI.html @@ -77,7 +77,7 @@ FSA - 0.8.28 + 0.8.29 @@ -180,7 +180,7 @@

R

Agresti, A. and B.A. Coull. 1998. Approximate is better than “exact” for interval estimation of binomial proportions. American Statistician, 52:119-126.

See also

-

See binom.test; binconf in Hmisc; binom.exact, binom.wilson, and binom.approx documented in binom.conf.int in epitools, and functions in binom.

+

See binom.test; binconf in Hmisc; and functions in binom.

Examples

## All types at once
@@ -221,7 +221,7 @@ 
Contents

     
 
     
Author

-    
Derek H. Ogle, derek@derekogle.com

+    
Derek H. Ogle, derek@derekogle.com, though this is largely based on binom.exact, binom.wilson, and binom.approx from the old epitools package.

   

 
 
diff --git a/docs/reference/bootCase.html b/docs/reference/bootCase.html
index 512297ef..b9e3cefe 100644
--- a/docs/reference/bootCase.html
+++ b/docs/reference/bootCase.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/capHistConvert.html b/docs/reference/capHistConvert.html
index 8f8b8ef8..2e36c546 100644
--- a/docs/reference/capHistConvert.html
+++ b/docs/reference/capHistConvert.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/capHistSum.html b/docs/reference/capHistSum.html
index 95f599b3..edc974ea 100644
--- a/docs/reference/capHistSum.html
+++ b/docs/reference/capHistSum.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/catchCurve.html b/docs/reference/catchCurve.html
index 9aff92c3..a00d6c7a 100644
--- a/docs/reference/catchCurve.html
+++ b/docs/reference/catchCurve.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/chapmanRobson.html b/docs/reference/chapmanRobson.html
index 290508ae..ec821edc 100644
--- a/docs/reference/chapmanRobson.html
+++ b/docs/reference/chapmanRobson.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/chooseColors.html b/docs/reference/chooseColors.html
index 5cfb4a3e..703c2d0c 100644
--- a/docs/reference/chooseColors.html
+++ b/docs/reference/chooseColors.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/col2rgbt.html b/docs/reference/col2rgbt.html
index 099555e2..744ac885 100644
--- a/docs/reference/col2rgbt.html
+++ b/docs/reference/col2rgbt.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/compIntercepts.html b/docs/reference/compIntercepts.html
index 23602790..e49dafef 100644
--- a/docs/reference/compIntercepts.html
+++ b/docs/reference/compIntercepts.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/compSlopes.html b/docs/reference/compSlopes.html
index 55453e7c..612b8a78 100644
--- a/docs/reference/compSlopes.html
+++ b/docs/reference/compSlopes.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/depletion.html b/docs/reference/depletion.html
index 8a81311c..30d1d898 100644
--- a/docs/reference/depletion.html
+++ b/docs/reference/depletion.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/diags.html b/docs/reference/diags.html
index c3e06215..20d7350a 100644
--- a/docs/reference/diags.html
+++ b/docs/reference/diags.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/dunnTest.html b/docs/reference/dunnTest.html
index 86c0fccd..66cf6203 100644
--- a/docs/reference/dunnTest.html
+++ b/docs/reference/dunnTest.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/expandCounts.html b/docs/reference/expandCounts.html
index 2e069e1f..687c3db0 100644
--- a/docs/reference/expandCounts.html
+++ b/docs/reference/expandCounts.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/expandLenFreq.html b/docs/reference/expandLenFreq.html
index f92d40e8..fac39834 100644
--- a/docs/reference/expandLenFreq.html
+++ b/docs/reference/expandLenFreq.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/extraTests.html b/docs/reference/extraTests.html
index 8f5b8cab..95c6773d 100644
--- a/docs/reference/extraTests.html
+++ b/docs/reference/extraTests.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/fact2num.html b/docs/reference/fact2num.html
index a0d96c5e..40aa1820 100644
--- a/docs/reference/fact2num.html
+++ b/docs/reference/fact2num.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/fishR.html b/docs/reference/fishR.html
index 42c7f978..c738afe5 100644
--- a/docs/reference/fishR.html
+++ b/docs/reference/fishR.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/fitPlot.html b/docs/reference/fitPlot.html
index 0ef4585f..8732450e 100644
--- a/docs/reference/fitPlot.html
+++ b/docs/reference/fitPlot.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/fsaNews.html b/docs/reference/fsaNews.html
index 65f2a40a..996c7860 100644
--- a/docs/reference/fsaNews.html
+++ b/docs/reference/fsaNews.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/geomean.html b/docs/reference/geomean.html
index ecf9bddb..2c13eac9 100644
--- a/docs/reference/geomean.html
+++ b/docs/reference/geomean.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/growthModels.html b/docs/reference/growthModels.html
index 6a6a6477..91c99f2e 100644
--- a/docs/reference/growthModels.html
+++ b/docs/reference/growthModels.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
@@ -267,8 +267,8 @@ 
Examp
 #>     }
 #>     Linf * (1 - exp(-K * (t - t0)))
 #> }
-#> <bytecode: 0x0000000015e5b5b0>
-#> <environment: 0x0000000015def660>
ages <- 0:20
+#> <bytecode: 0x0000000015227498>
+#> <environment: 0x0000000014c0a318>
ages <- 0:20
 plot(vb1(ages,Linf=20,K=0.3,t0=-0.2)~ages,type="b",pch=19)
( vb2 <- vbFuns("Francis") )
#> function (t, L1, L2 = NULL, L3 = NULL, t1, t3 = NULL) 
 #> {
 #>     if (length(L1) == 3) {
@@ -284,15 +284,15 @@ 
Examp
 #>     L1 + (L3 - L1) * ((1 - r^(2 * ((t - t1)/(t3 - t1))))/(1 - 
 #>         r^2))
 #> }
-#> <bytecode: 0x0000000015e3ff10>
-#> <environment: 0x000000001593f5b8>
plot(vb2(ages,L1=10,L2=19,L3=20,t1=2,t3=18)~ages,type="b",pch=19)
( vb2c <- vbFuns("Francis",simple=TRUE) )   # compare to vb2
#> function (t, L1, L2, L3, t1, t3) 
+#> <bytecode: 0x00000000175211e0>
+#> <environment: 0x000000001581f540>
plot(vb2(ages,L1=10,L2=19,L3=20,t1=2,t3=18)~ages,type="b",pch=19)
( vb2c <- vbFuns("Francis",simple=TRUE) )   # compare to vb2
#> function (t, L1, L2, L3, t1, t3) 
 #> {
 #>     r <- (L3 - L2)/(L2 - L1)
 #>     L1 + (L3 - L1) * ((1 - r^(2 * ((t - t1)/(t3 - t1))))/(1 - 
 #>         r^2))
 #> }
-#> <bytecode: 0x0000000015e41ff0>
-#> <environment: 0x000000001890ae70>

+#> <bytecode: 0x00000000175232c0>
+#> <environment: 0x0000000016017c88>

 ## Simple Examples -- Gompertz
 ( gomp1 <- GompertzFuns() )
#> function (t, Linf, gi = NULL, ti = NULL) 
 #> {
@@ -303,8 +303,8 @@ 
Examp
 #>     }
 #>     Linf * exp(-exp(-gi * (t - ti)))
 #> }
-#> <bytecode: 0x0000000017997dd0>
-#> <environment: 0x00000000189f0760>
plot(gomp1(ages,Linf=800,gi=0.5,ti=5)~ages,type="b",pch=19)
( gomp2 <- GompertzFuns("Ricker2") )
#> function (t, L0, a = NULL, gi = NULL) 
+#> <bytecode: 0x0000000018a20980>
+#> <environment: 0x00000000150b91c8>
plot(gomp1(ages,Linf=800,gi=0.5,ti=5)~ages,type="b",pch=19)
( gomp2 <- GompertzFuns("Ricker2") )
#> function (t, L0, a = NULL, gi = NULL) 
 #> {
 #>     if (length(L0) == 3) {
 #>         a <- L0[[2]]
@@ -313,13 +313,13 @@ 
Examp
 #>     }
 #>     L0 * exp(a * (1 - exp(-gi * t)))
 #> }
-#> <bytecode: 0x000000001799a968>
-#> <environment: 0x0000000017311d38>
plot(gomp2(ages,L0=2,a=6,gi=0.5)~ages,type="b",pch=19)
( gomp2c <- GompertzFuns("Ricker2",simple=TRUE) )   # compare to gomp2
#> function (t, L0, a, gi) 
+#> <bytecode: 0x0000000018a23518>
+#> <environment: 0x000000001652a750>
plot(gomp2(ages,L0=2,a=6,gi=0.5)~ages,type="b",pch=19)
( gomp2c <- GompertzFuns("Ricker2",simple=TRUE) )   # compare to gomp2
#> function (t, L0, a, gi) 
 #> {
 #>     L0 * exp(a * (1 - exp(-gi * t)))
 #> }
-#> <bytecode: 0x0000000017999c80>
-#> <environment: 0x000000000ad61040>
( gompT <- GompertzFuns("Troynikov1"))
#> function (Lm, dt, Linf, gi = NULL) 
+#> <bytecode: 0x0000000018a22830>
+#> <environment: 0x00000000151ce0a0>
( gompT <- GompertzFuns("Troynikov1"))
#> function (Lm, dt, Linf, gi = NULL) 
 #> {
 #>     if (length(Linf) == 2) {
 #>         gi <- Linf[2]
@@ -327,8 +327,8 @@ 
Examp
 #>     }
 #>     Linf * ((Lm/Linf)^exp(-gi * dt)) - Lm
 #> }
-#> <bytecode: 0x00000000179a09d8>
-#> <environment: 0x0000000017769c58>

+#> <bytecode: 0x00000000150b3ec0>
+#> <environment: 0x00000000150c1488>

 ## Simple Examples -- Richards
 ( rich1 <- RichardsFuns() )
#> function (t, Linf, k = NULL, a = NULL, b = NULL) 
 #> {
@@ -340,8 +340,8 @@ 
Examp
 #>     }
 #>     Linf * (1 - a * exp(-k * t))^b
 #> }
-#> <bytecode: 0x0000000018ab78d0>
-#> <environment: 0x000000000b7e2880>
plot(rich1(ages,Linf=800,k=0.5,a=1,b=6)~ages,type="b",pch=19)
( rich2 <- RichardsFuns(2) )
#> function (t, Linf, k = NULL, ti = NULL, b = NULL) 
+#> <bytecode: 0x000000001609aaf0>
+#> <environment: 0x0000000017596b80>
plot(rich1(ages,Linf=800,k=0.5,a=1,b=6)~ages,type="b",pch=19)
( rich2 <- RichardsFuns(2) )
#> function (t, Linf, k = NULL, ti = NULL, b = NULL) 
 #> {
 #>     if (length(Linf) == 4) {
 #>         k <- Linf[[2]]
@@ -351,8 +351,8 @@ 
Examp
 #>     }
 #>     Linf * (1 - (1/b) * exp(-k * (t - ti)))^b
 #> }
-#> <bytecode: 0x000000001756abe8>
-#> <environment: 0x00000000174e8458>
plot(rich2(ages,Linf=800,k=0.5,ti=3,b=6)~ages,type="b",pch=19)
( rich3 <- RichardsFuns(3) )
#> function (t, Linf, k = NULL, ti = NULL, b = NULL) 
+#> <bytecode: 0x000000001609d3b0>
+#> <environment: 0x000000000b790678>
plot(rich2(ages,Linf=800,k=0.5,ti=3,b=6)~ages,type="b",pch=19)
( rich3 <- RichardsFuns(3) )
#> function (t, Linf, k = NULL, ti = NULL, b = NULL) 
 #> {
 #>     if (length(Linf) == 4) {
 #>         k <- Linf[[2]]
@@ -362,8 +362,8 @@ 
Examp
 #>     }
 #>     Linf/((1 + b * exp(-k * (t - ti)))^(1/b))
 #> }
-#> <bytecode: 0x000000001884d350>
-#> <environment: 0x000000000c167108>
plot(rich3(ages,Linf=800,k=0.5,ti=3,b=0.15)~ages,type="b",pch=19)
( rich4 <- RichardsFuns(4) )
#> function (t, Linf, k = NULL, ti = NULL, b = NULL) 
+#> <bytecode: 0x000000001609b9e0>
+#> <environment: 0x0000000015740060>
plot(rich3(ages,Linf=800,k=0.5,ti=3,b=0.15)~ages,type="b",pch=19)
( rich4 <- RichardsFuns(4) )
#> function (t, Linf, k = NULL, ti = NULL, b = NULL) 
 #> {
 #>     if (length(Linf) == 4) {
 #>         k <- Linf[[2]]
@@ -373,8 +373,8 @@ 
Examp
 #>     }
 #>     Linf * (1 + (b - 1) * exp(-k * (t - ti)))^(1/(1 - b))
 #> }
-#> <bytecode: 0x0000000009c232d8>
-#> <environment: 0x000000000bf39038>
plot(rich4(ages,Linf=800,k=0.5,ti=3,b=0.95)~ages,type="b",pch=19)
lines(rich4(ages,Linf=800,k=0.5,ti=3,b=1.5)~ages,type="b",pch=19,col="blue")
( rich5 <- RichardsFuns(5) )
#> function (t, Linf, k = NULL, L0 = NULL, b = NULL) 
+#> <bytecode: 0x000000001609dd60>
+#> <environment: 0x000000001887be78>
plot(rich4(ages,Linf=800,k=0.5,ti=3,b=0.95)~ages,type="b",pch=19)
lines(rich4(ages,Linf=800,k=0.5,ti=3,b=1.5)~ages,type="b",pch=19,col="blue")
( rich5 <- RichardsFuns(5) )
#> function (t, Linf, k = NULL, L0 = NULL, b = NULL) 
 #> {
 #>     if (length(Linf) == 4) {
 #>         k <- Linf[[2]]
@@ -385,8 +385,8 @@ 
Examp
 #>     Linf * (1 + (((L0/Linf)^(1 - b)) - 1) * exp(-k * t))^(1/(1 - 
 #>         b))
 #> }
-#> <bytecode: 0x0000000017025ed0>
-#> <environment: 0x000000000b74c8d0>
plot(rich5(ages,Linf=800,k=0.5,L0=50,b=1.5)~ages,type="b",pch=19)
( rich6 <- RichardsFuns(6) )
#> function (t, Linf, k = NULL, ti = NULL, Lninf = NULL, b = NULL) 
+#> <bytecode: 0x000000001758fcd8>
+#> <environment: 0x0000000018690600>
plot(rich5(ages,Linf=800,k=0.5,L0=50,b=1.5)~ages,type="b",pch=19)
( rich6 <- RichardsFuns(6) )
#> function (t, Linf, k = NULL, ti = NULL, Lninf = NULL, b = NULL) 
 #> {
 #>     if (length(Linf) == 5) {
 #>         k <- Linf[[2]]
@@ -398,13 +398,13 @@ 
Examp
 #>     Lninf + (Linf - Lninf) * (1 + (b - 1) * exp(-k * (t - ti)))^(1/(1 - 
 #>         b))
 #> }
-#> <bytecode: 0x000000001655b0a8>
-#> <environment: 0x000000000b440e40>
plot(rich6(ages,Linf=800,k=0.5,ti=3,Lninf=50,b=1.5)~ages,type="b",pch=19)
( rich2c <- RichardsFuns(2,simple=TRUE) ) # compare to rich2
#> function (t, Linf, k, ti, b) 
+#> <bytecode: 0x0000000017591840>
+#> <environment: 0x0000000009d33340>
plot(rich6(ages,Linf=800,k=0.5,ti=3,Lninf=50,b=1.5)~ages,type="b",pch=19)
( rich2c <- RichardsFuns(2,simple=TRUE) ) # compare to rich2
#> function (t, Linf, k, ti, b) 
 #> {
 #>     Linf * (1 - (1/b) * exp(-k * (t - ti)))^b
 #> }
-#> <bytecode: 0x00000000160e1e58>
-#> <environment: 0x000000000b1ee3e8>

+#> <bytecode: 0x000000001609c2a0>
+#> <environment: 0x0000000016a51b50>

 ## Simple Examples -- Logistic
 ( log1 <- logisticFuns() )
#> function (t, Linf, gninf = NULL, ti = NULL) 
 #> {
@@ -415,8 +415,8 @@ 
Examp
 #>     }
 #>     Linf/(1 + exp(-gninf * (t - ti)))
 #> }
-#> <bytecode: 0x000000000b1299a8>
-#> <environment: 0x000000000b1220e0>
plot(log1(ages,Linf=800,gninf=0.5,ti=5)~ages,type="b",pch=19)
( log2 <- logisticFuns("CJ2") )
#> function (t, Linf, gninf = NULL, a = NULL) 
+#> <bytecode: 0x0000000015a3d080>
+#> <environment: 0x00000000159069a8>
plot(log1(ages,Linf=800,gninf=0.5,ti=5)~ages,type="b",pch=19)
( log2 <- logisticFuns("CJ2") )
#> function (t, Linf, gninf = NULL, a = NULL) 
 #> {
 #>     if (length(Linf) == 3) {
 #>         gninf <- Linf[[2]]
@@ -425,13 +425,13 @@ 
Examp
 #>     }
 #>     Linf/(1 + a * exp(-gninf * t))
 #> }
-#> <bytecode: 0x000000000b128bd0>
-#> <environment: 0x000000000ae6c698>
plot(log2(ages,Linf=800,gninf=0.5,a=10)~ages,type="b",pch=19)
( log2c <- logisticFuns("CJ2",simple=TRUE) ) # compare to log2
#> function (t, Linf, gninf, a) 
+#> <bytecode: 0x0000000015a28ab8>
+#> <environment: 0x0000000014d12f28>
plot(log2(ages,Linf=800,gninf=0.5,a=10)~ages,type="b",pch=19)
( log2c <- logisticFuns("CJ2",simple=TRUE) ) # compare to log2
#> function (t, Linf, gninf, a) 
 #> {
 #>     Linf/(1 + a * exp(-gninf * t))
 #> }
-#> <bytecode: 0x000000000b125c48>
-#> <environment: 0x000000000ab400a0>
( log3 <- logisticFuns("Karkach") )
#> function (t, Linf, L0 = NULL, gninf = NULL) 
+#> <bytecode: 0x0000000015a29768>
+#> <environment: 0x000000000b1c6c90>
( log3 <- logisticFuns("Karkach") )
#> function (t, Linf, L0 = NULL, gninf = NULL) 
 #> {
 #>     if (length(Linf) == 3) {
 #>         L0 <- Linf[[2]]
@@ -440,8 +440,8 @@ 
Examp
 #>     }
 #>     L0 * Linf/(L0 + (Linf - L0) * exp(-gninf * t))
 #> }
-#> <bytecode: 0x000000000b1261f8>
-#> <environment: 0x000000000aa95430>
plot(log3(ages,L0=10,Linf=800,gninf=0.5)~ages,type="b",pch=19)
( log4 <- logisticFuns("Haddon") )
#> function (Lm, dLmax, L50 = NULL, L95 = NULL) 
+#> <bytecode: 0x0000000015a29d18>
+#> <environment: 0x000000000b12ff78>
plot(log3(ages,L0=10,Linf=800,gninf=0.5)~ages,type="b",pch=19)
( log4 <- logisticFuns("Haddon") )
#> function (Lm, dLmax, L50 = NULL, L95 = NULL) 
 #> {
 #>     if (length(dLmax) == 3) {
 #>         L50 <- dLmax[2]
@@ -450,8 +450,8 @@ 
Examp
 #>     }
 #>     dLmax/(1 + exp(log(19) * ((Lm - L50)/(L95 - L50))))
 #> }
-#> <bytecode: 0x000000000b1239a8>
-#> <environment: 0x0000000009d865a0>

+#> <bytecode: 0x0000000015984ab8>
+#> <environment: 0x000000000aa79cd8>

 
 ###########################################################
 ## Examples of fitting
diff --git a/docs/reference/headtail.html b/docs/reference/headtail.html
index 2c68137f..82e00dc8 100644
--- a/docs/reference/headtail.html
+++ b/docs/reference/headtail.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     

 
diff --git a/docs/reference/hist.formula.html b/docs/reference/hist.formula.html
index 45ec176e..e0d28175 100644
--- a/docs/reference/hist.formula.html
+++ b/docs/reference/hist.formula.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/histFromSum.html b/docs/reference/histFromSum.html
index 5cc487e0..c2adc97d 100644
--- a/docs/reference/histFromSum.html
+++ b/docs/reference/histFromSum.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/hoCoef.html b/docs/reference/hoCoef.html
index d7136726..29a01d8e 100644
--- a/docs/reference/hoCoef.html
+++ b/docs/reference/hoCoef.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/hyperCI.html b/docs/reference/hyperCI.html
index 5bfe1a1f..bc321969 100644
--- a/docs/reference/hyperCI.html
+++ b/docs/reference/hyperCI.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/index.html b/docs/reference/index.html
index 7aeeb367..60ce0838 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -76,7 +76,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/knitUtil.html b/docs/reference/knitUtil.html
index 69d41a8b..71fafdcf 100644
--- a/docs/reference/knitUtil.html
+++ b/docs/reference/knitUtil.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/ksTest.html b/docs/reference/ksTest.html
index 1e9ee07a..562ed905 100644
--- a/docs/reference/ksTest.html
+++ b/docs/reference/ksTest.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/lagratio.html b/docs/reference/lagratio.html
index 59b6a278..74453c67 100644
--- a/docs/reference/lagratio.html
+++ b/docs/reference/lagratio.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/lencat.html b/docs/reference/lencat.html
index b1504ff0..1dcc90ff 100644
--- a/docs/reference/lencat.html
+++ b/docs/reference/lencat.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/logbtcf.html b/docs/reference/logbtcf.html
index 3e3957d9..c9d8213d 100644
--- a/docs/reference/logbtcf.html
+++ b/docs/reference/logbtcf.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/lwCompPreds.html b/docs/reference/lwCompPreds.html
index b17dcd89..ee0e8319 100644
--- a/docs/reference/lwCompPreds.html
+++ b/docs/reference/lwCompPreds.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/mapvalues.html b/docs/reference/mapvalues.html
index eb9bcfeb..2005831b 100644
--- a/docs/reference/mapvalues.html
+++ b/docs/reference/mapvalues.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/metaM.html b/docs/reference/metaM.html
index 1c21b770..b4fdd6f2 100644
--- a/docs/reference/metaM.html
+++ b/docs/reference/metaM.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/mrClosed.html b/docs/reference/mrClosed.html
index 20471377..0a414926 100644
--- a/docs/reference/mrClosed.html
+++ b/docs/reference/mrClosed.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/mrOpen.html b/docs/reference/mrOpen.html
index 39b7ac09..e6882c05 100644
--- a/docs/reference/mrOpen.html
+++ b/docs/reference/mrOpen.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/nlsBoot.html b/docs/reference/nlsBoot.html
index 3e9674eb..b6112a9c 100644
--- a/docs/reference/nlsBoot.html
+++ b/docs/reference/nlsBoot.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/nlsTracePlot.html b/docs/reference/nlsTracePlot.html
index a806ea6e..acd2e111 100644
--- a/docs/reference/nlsTracePlot.html
+++ b/docs/reference/nlsTracePlot.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/oddeven.html b/docs/reference/oddeven.html
index f2117f19..10261458 100644
--- a/docs/reference/oddeven.html
+++ b/docs/reference/oddeven.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/perc.html b/docs/reference/perc.html
index 9d756fde..16982b19 100644
--- a/docs/reference/perc.html
+++ b/docs/reference/perc.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/plotAB.html b/docs/reference/plotAB.html
index 6887dd1c..8dc35dbc 100644
--- a/docs/reference/plotAB.html
+++ b/docs/reference/plotAB.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/plotBinResp.html b/docs/reference/plotBinResp.html
index 601042e5..220efc46 100644
--- a/docs/reference/plotBinResp.html
+++ b/docs/reference/plotBinResp.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/poiCI.html b/docs/reference/poiCI.html
index a4c400be..6a8f1a34 100644
--- a/docs/reference/poiCI.html
+++ b/docs/reference/poiCI.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
@@ -158,10 +158,8 @@ 
Value

     
A #x2 matrix that contains the lower and upper confidence interval bounds as columns and, if verbose=TRUE x.

     
Details

 
-    
Computes a CI for the Poisson counts using the exact, gamma distribution (daly`), Byar's (byar), or normal approximation (asymptotic) methods. This is largely a wrapper to pois.exact, pois.daly, pois.byar, and pois.approx functions documented in pois.conf.intin epitools.

-    
See also

-
-    
See pois.exact, pois.daly, pois.byar, and pois.approx (documented in pois.conf.int) in epitools for more description and references.

+    
Computes a CI for the Poisson counts using the exact, gamma distribution (daly`), Byar's (byar), or normal approximation (asymptotic) methods.

+
The pois.daly function gives essentially identical answers to the pois.exact function except when x=0. When x=0, for the upper confidence limit pois.exact returns 3.689 and pois.daly returns 2.996.

 
     
Examples

     
## Demonstrates using all types at once
@@ -194,12 +192,11 @@ 
Contents

       
  • Arguments
    • 
       
  • Value
    • 
       
  • Details
    • 
-      
  • See also
    • 
       
  • Examples
    • 
     
 
     
    Author
    
-    
    Derek H. Ogle, derek@derekogle.com
    
+    
    Derek H. Ogle, derek@derekogle.com, though this is largely based on pois.exact, pois.daly, pois.byar, and pois.approx from the old epitools package.
    
   
    
 
 
diff --git a/docs/reference/psdAdd.html b/docs/reference/psdAdd.html
index 15db98a3..6765e7f1 100644
--- a/docs/reference/psdAdd.html
+++ b/docs/reference/psdAdd.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/psdCI.html b/docs/reference/psdCI.html
index e74e37a6..d5047a53 100644
--- a/docs/reference/psdCI.html
+++ b/docs/reference/psdCI.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/psdCalc.html b/docs/reference/psdCalc.html
index d3f50564..66d02eed 100644
--- a/docs/reference/psdCalc.html
+++ b/docs/reference/psdCalc.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/psdPlot.html b/docs/reference/psdPlot.html
index 910fb9bf..6fdc0a65 100644
--- a/docs/reference/psdPlot.html
+++ b/docs/reference/psdPlot.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/psdVal.html b/docs/reference/psdVal.html
index cc739b22..e619bc38 100644
--- a/docs/reference/psdVal.html
+++ b/docs/reference/psdVal.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/rSquared.html b/docs/reference/rSquared.html
index de02eacc..8facb701 100644
--- a/docs/reference/rSquared.html
+++ b/docs/reference/rSquared.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/rcumsum.html b/docs/reference/rcumsum.html
index ff3c46d1..feae6993 100644
--- a/docs/reference/rcumsum.html
+++ b/docs/reference/rcumsum.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/removal.html b/docs/reference/removal.html
index c92c18d1..fe3e83b5 100644
--- a/docs/reference/removal.html
+++ b/docs/reference/removal.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/residPlot.html b/docs/reference/residPlot.html
index df7f6fbc..abec0f54 100644
--- a/docs/reference/residPlot.html
+++ b/docs/reference/residPlot.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/se.html b/docs/reference/se.html
index a726bc42..22040a4d 100644
--- a/docs/reference/se.html
+++ b/docs/reference/se.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/srStarts.html b/docs/reference/srStarts.html
index 22bf1b75..c1635405 100644
--- a/docs/reference/srStarts.html
+++ b/docs/reference/srStarts.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/stockRecruitment.html b/docs/reference/stockRecruitment.html
index 6c9af62a..6b2e4359 100644
--- a/docs/reference/stockRecruitment.html
+++ b/docs/reference/stockRecruitment.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
@@ -205,8 +205,8 @@ 
    Examp
 #>     }
 #>     a * S * exp(-b * S)
 #> }
-#> <bytecode: 0x0000000017c3a248>
-#> <environment: 0x00000000169377e8>
    
+#> <bytecode: 0x0000000018e22450>
+#> <environment: 0x0000000014c32378>
    
 # create some dummy stock data
 stock <- seq(0.01,1000,length.out=199)
 
@@ -219,8 +219,8 @@ 
    Examp
 #>     }
 #>     a * S/(1 + b * S)
 #> }
-#> <bytecode: 0x00000000183094c0>
-#> <environment: 0x0000000016ccb580>
    plot(bh1(stock,a=0.5,b=0.01)~stock,type="l",lwd=2,ylab="Recruits",xlab="Spawners",ylim=c(0,50))
    
+#> <bytecode: 0x0000000015939c50>
+#> <environment: 0x00000000169a3e40>
    plot(bh1(stock,a=0.5,b=0.01)~stock,type="l",lwd=2,ylab="Recruits",xlab="Spawners",ylim=c(0,50))
    
 # Ricker #1 parameterization
 ( r1 <- srFuns("Ricker") )
    #> function (S, a, b = NULL) 
 #> {
@@ -230,8 +230,8 @@ 
    Examp
 #>     }
 #>     a * S * exp(-b * S)
 #> }
-#> <bytecode: 0x0000000017c3a248>
-#> <environment: 0x0000000015d32cc0>
    lines(r1(stock,a=0.5,b=0.005)~stock,lwd=2,col="red")
    
+#> <bytecode: 0x0000000018e22450>
+#> <environment: 0x0000000016e39c90>
    lines(r1(stock,a=0.5,b=0.005)~stock,lwd=2,col="red")
    
 # Shephered parameterization
 ( s1 <- srFuns("Shepherd") )
    #> function (S, a, b = NULL, c = NULL) 
 #> {
@@ -242,8 +242,8 @@ 
    Examp
 #>     }
 #>     a * S/(1 + (b * S)^c)
 #> }
-#> <bytecode: 0x0000000015e58590>
-#> <environment: 0x0000000015f82950>
    lines(s1(stock,a=0.5,b=0.005,c=2.5)~stock,lwd=2,col="blue")
    
+#> <bytecode: 0x0000000018e2ae60>
+#> <environment: 0x0000000015a465d0>
    lines(s1(stock,a=0.5,b=0.005,c=2.5)~stock,lwd=2,col="blue")
    
 # Saila-Lorda parameterization
 ( sl1 <- srFuns("SailaLorda") )
    #> function (S, a, b = NULL, c = NULL) 
 #> {
@@ -254,8 +254,8 @@ 
    Examp
 #>     }
 #>     a * (S^c) * exp(-b * S)
 #> }
-#> <bytecode: 0x0000000015e59a90>
-#> <environment: 0x000000001654b068>
    lines(sl1(stock,a=0.5,b=0.005,c=1.05)~stock,lwd=2,col="salmon")
    
+#> <bytecode: 0x0000000018e2d838>
+#> <environment: 0x000000000b781ae0>
    lines(sl1(stock,a=0.5,b=0.005,c=1.05)~stock,lwd=2,col="salmon")
    
 ## Examples of fitting stock-recruitment functions
 # Fitting the Beverton-Holt #1 parameterization with multiplicative errors
 bh1s <- srStarts(recruits~stock,data=CodNorwegian)
diff --git a/docs/reference/sumTable.html b/docs/reference/sumTable.html
index 05bffbf0..d3d17c76 100644
--- a/docs/reference/sumTable.html
+++ b/docs/reference/sumTable.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
    
 
diff --git a/docs/reference/tictactoe.html b/docs/reference/tictactoe.html
index 3c19b29a..d297b496 100644
--- a/docs/reference/tictactoe.html
+++ b/docs/reference/tictactoe.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/validn.html b/docs/reference/validn.html
index 1ee4988a..6114e4cc 100644
--- a/docs/reference/validn.html
+++ b/docs/reference/validn.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/vbStarts.html b/docs/reference/vbStarts.html
index e65afa67..5a9f77b0 100644
--- a/docs/reference/vbStarts.html
+++ b/docs/reference/vbStarts.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/wrAdd.html b/docs/reference/wrAdd.html
index 90c5a563..05b0f895 100644
--- a/docs/reference/wrAdd.html
+++ b/docs/reference/wrAdd.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29
       
     
 
diff --git a/docs/reference/wsVal.html b/docs/reference/wsVal.html
index 93a370f7..52b56c01 100644
--- a/docs/reference/wsVal.html
+++ b/docs/reference/wsVal.html
@@ -77,7 +77,7 @@
       
       
         FSA
-        0.8.28
+        0.8.29