Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Very Strong artifacts #117

Open
lacan opened this issue Mar 7, 2017 · 2 comments
Open

Very Strong artifacts #117

lacan opened this issue Mar 7, 2017 · 2 comments

Comments

@lacan
Copy link

lacan commented Mar 7, 2017

Dataset: 5 Views of about 400 slices each.

2 Channel images, with one channel containing the beads ( 561nm ), the other the sample ( 488nm ).

Registration done on 200nm beads, then duplicated to other channel.

Voxel Size: 320nm in xy and 1000nm in z

Deconvolution done using the beads of channel 561 for both channels on CUDA
10 iterations, all defaults except for blocksize of 1024x1204x256, effective block size around 972x970x180

At the end we get terrible artifacts on the images and have no idea where these could be from.

image

I would be very grateful for some insight on this.

Deconvolution on smaller images taken with the same modality seem to be unaffected.

@lacan
Copy link
Author

lacan commented Mar 7, 2017

I can submit the HDF5 Dataset if needed (~8GB)

@stevenedwards
Copy link

I've also seen similar artefacts when using 1024x1024x768 block size on CUDA. Using smaller block sizes (512x512x512) solved the issue (as a quick fix).

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants