thesis.tex

\documentclass[twoside,openright,titlepage,numbers=noenddot,headinclude,%
               footinclude=true,cleardoublepage=empty,abstractoff,BCOR=5mm,%
               a4paper,fontsize=11pt,english]{scrreprt}

%%%%%%%%%%%%%%%%
%---PACKAGES---%
%%%%%%%%%%%%%%%%
 \usepackage[nodayofweek]{datetime}
\usepackage{amsmath}
\usepackage{amsthm}
\usepackage{amssymb}
\usepackage{algpseudocode}
\usepackage{framed}
\usepackage{color}
\usepackage{colortbl}
\usepackage{float}
\usepackage[all]{xy}
\usepackage[T1]{fontenc}
\usepackage{rotating}
\usepackage{dcolumn}
\usepackage{multirow}
\usepackage{multicol}  
\usepackage{afterpage}
\usepackage[dutch,english]{babel}
\usepackage[toc,page]{appendix}
\usepackage{hyphenat}

% \usepackage[square]{natbib}
% \hyphenation{Wer-theim}
% \hyphenation{Ko-sa-kov-sky }

% \usepackage{eso-pic}
% \usepackage{listings}
% \usepackage{typearea}
% \geometry{bottom=20cm}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%---USER SPECIFIED LaTeX COMMANDS---%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% Classic thesis
\input{classicthesis-config}

% consistent edits between manuscript and rebuttal letter
%\input{make-edits}

% Theorems and definitions
\newtheorem{theorem}{Theorem}
\newtheorem{lemma}[theorem]{Lemma}
\newtheorem{proposition}[theorem]{Proposition}
\newtheorem{corollary}[theorem]{Corollary}
\newtheorem{definition}{Definition}
\newtheorem{algorithm}{Algorithm}

% Counters
\renewcommand{\labelenumi}{{\color{halfgray}(\roman{enumi})}}
% \renewcommand{\labelenumii}{\color{halfgray}{\alph{enumii}.}}
\renewcommand{\labelitemi}{{\color{halfgray}$\bullet$}}%\raisebox{0.3ex}{\tiny$\blacksquare$}}}

\numberwithin{theorem}{chapter}
\numberwithin{definition}{chapter}
\numberwithin{algorithm}{chapter}
\numberwithin{figure}{chapter}
\numberwithin{table}{chapter}

% Math
\DeclareSymbolFont{letters}{OML}{ztmcm}{m}{it}
\DeclareSymbolFontAlphabet{\mathnormal}{letters}

\numberwithin{equation}{chapter}
\allowdisplaybreaks

% Remarks
% change for print/online version
\newcommand{\remarkcolor}{\color{black}} %maroon
\newenvironment{remark}[1]{%
  \definecolor{shadecolor}{gray}{0.9}%
  \begin{shaded}{\remarkcolor \noindent\textsc{#1}}\\%
}{%
  \end{shaded}%
}

% lyxcode
\newenvironment{lyxcode}
{\par\begin{list}{}{
\setlength{\rightmargin}{\leftmargin}
\setlength{\listparindent}{0pt}% needed for AMS classes
\raggedright
\setlength{\itemsep}{0pt}
\setlength{\parsep}{0pt}
\normalfont\ttfamily}%
 \item[]}
{\end{list}}

% Code
\newenvironment{code}
{\par\begin{list}{}{
\setlength{\rightmargin}{\leftmargin}
\setlength{\listparindent}{0pt}% needed for AMS classes
\raggedright
\setlength{\itemsep}{0pt}
\setlength{\parsep}{0pt}
\normalfont\ttfamily}%
 \item[]}
{\end{list}}


% XML syntax highlight
\lstdefinelanguage{XML} {
  morestring=[b]",
  morestring=[s]{>}{<},
  morecomment=[s]{<?}{?>},
  stringstyle=\color{black},
  identifierstyle=\color{darkblue},
  keywordstyle=\color{cyan},
  morekeywords={code,id,idref,dimension,value} % list your attributes here
}

% XML syntax highlight
\lstset{
  language=XML,
  basicstyle=\ttfamily,
  columns=fullflexible,
  showstringspaces=false,
  commentstyle=\color{gray}\upshape
}

% maxwidth is the original width if it is less than linewidth
% otherwise use linewidth (to make sure the graphics do not exceed the margin)
\def\maxwidth{ %
  \ifdim\Gin@nat@width>\linewidth
    \linewidth
  \else
    \Gin@nat@width
  \fi
}

% Colors
\definecolor{rulecolor}{rgb}{0.80,0.80,0.80}
\definecolor{bgcolor}{rgb}{1.0,1.0,1.0}
\definecolor{maroon}{rgb}{0.5,0,0}
\definecolor{gray1}{gray}{0.9}
\definecolor{gray2}{gray}{0.5}
\definecolor{fgcolor}{rgb}{0.2, 0.2, 0.2}
\definecolor{green}{rgb}{0.0,0.5607843,0.0}
\definecolor{darkblue}{rgb}{0.0,0.0,0.6}
\definecolor{snow3}{rgb}{0.8,0.78,0.78}

% Algorithms
\floatstyle{ruled}
\newfloat{algorithm}{tbp}{loa}
\providecommand{\algorithmname}{Algorithm}
\floatname{algorithm}{\protect\algorithmname}

% dcolumn definition of decimally aligned table
\newcolumntype{.}{D{.}{.}{-1}}

% grey row colors
\newcommand{\gray}{\rowcolor{gray1}}

% TODO: shortcuts for all names, typed in \sc
\def \bussname {$\pi$BUSS}

% define how to controle figure scales
\def\figurescale{0.25}

\graphicspath{{figures/}}

%%%%%%%%%%%%%%%%
%---DOCUMENT---%
%%%%%%%%%%%%%%%%

\begin{document}

\frenchspacing
\raggedbottom
\selectlanguage{english}
\pagenumbering{roman}
\pagestyle{plain}

%%%%%%%%%%%%%
%---COVER---%
%%%%%%%%%%%%%



%%%%%%%%%%%%%%%%%%%
%---FRONT PAGES---%
%%%%%%%%%%%%%%%%%%%
\include{frontback/titlepage}
\cleardoublepage\include{frontback/disclaimer}
\cleardoublepage\include{frontback/jury}
\cleardoublepage\include{frontback/summary}
\cleardoublepage\include{frontback/samenvatting}
\cleardoublepage\include{frontback/acknowledgments}
\pagestyle{scrheadings}
\cleardoublepage\include{frontback/toc}

%%%%%%%%%%%%%%%
%---CONTENT---%
%%%%%%%%%%%%%%%
\pagenumbering{arabic}

\cleardoublepage
\include{chapters/chapter01}\cleardoublepage
\include{chapters/chapter02}\cleardoublepage
\include{chapters/chapter03}\cleardoublepage
\include{chapters/chapter04}\cleardoublepage
% \include{chapters/chapter05}\cleardoublepage
\include{chapters/chapter06}\cleardoublepage

%%%%%%%%%%%%%%%%%%
%---BACK PAGES---%
%%%%%%%%%%%%%%%%%%
\cleardoublepage\include{frontback/bibliography}

\begin{appendices}
\include{appendices/appendixa}\cleardoublepage
\include{appendices/appendixb}\cleardoublepage
\include{appendices/appendixc}\cleardoublepage
\end{appendices}



\end{document}