From b0a3cbbd3492eeea843ad1c8aa382897e5ab28c7 Mon Sep 17 00:00:00 2001 From: matthiasho Date: Thu, 23 Jul 2020 15:38:12 +0200 Subject: [PATCH] update incorrect link to igenomes conf --- .../{{cookiecutter.name_noslash}}/docs/usage.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/docs/usage.md b/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/docs/usage.md index c665f10518..4bce3abc98 100644 --- a/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/docs/usage.md +++ b/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/docs/usage.md @@ -153,7 +153,7 @@ The pipeline config files come bundled with paths to the illumina iGenomes refer There are 31 different species supported in the iGenomes references. To run the pipeline, you must specify which to use with the `--genome` flag. -You can find the keys to specify the genomes in the [iGenomes config file](../conf/igenomes.config). Common genomes that are supported are: +You can find the keys to specify the genomes in the [iGenomes config file](https://github.com/{{ cookiecutter.name }}/blob/master/conf/igenomes.config). Common genomes that are supported are: * Human * `--genome GRCh37`