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MultiQC v0.5
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@ewels ewels released this 29 Mar 16:05
v0.5
2b6c0f8

Latest version of MultiQC. Key highlights are big reports (hundreds / thousands of samples now possible), numerous new modules, better plugin framework and a bunch of tweaks for smoother running.

Changelog:

  • New Skewer module, written by @dakl
  • New Samblaster module, written by @dakl
  • New Samtools stats module, written by @lpantano
  • New HiCUP module
  • New SnpEff module
  • New methylQA module
  • New "Flat" image plots, rendered at run time with MatPlotLib
    • By default, will use image plots if > 50 samples (set in config as plots_flat_numseries)
    • Means that very large numbers of samples can be viewed in reports. eg. single cell data.
    • Templates can now specify their own plotting functions
    • Use --flat and --interactive to override this behaviour
  • MultiQC added to bioconda (with help from @dakl)
  • New plugin hook: config_loaded
  • Plugins can now add new command line options (thanks to @robinandeer)
  • Changed default data directory name from multiqc_report_data to multiqc_data
  • Removed support for depreciated MultiQC_OSXApp
  • Updated logging so that a verbose multiqc_data/.multiqc.log file is always written
  • Now logs more stuff in verbose mode - command used, user configs and so on.
  • Added a call to multiqc.info to check for new versions. Disable with config no_version_check
  • Removed general stats manual row sorting.
  • Made filename matching use glob unix style filename match patterns
  • Everything (including the data directory) is now created in a temporary directory and moved when MultiQC is complete.
  • A handful of performance updates for large analysis directories
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