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RSeqC junction saturation onclick behavior is "incompatible" with toolbox (rename,highlight,hide) #1133

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sergpolly opened this issue Mar 27, 2020 · 2 comments
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bug: core Bug in the main MultiQC code priority: high
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@sergpolly
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Description of bug:
RSeqC junction saturation section has an interactive onclick functionality - but it is incompatible with the MultiQC toolbox:

  1. renaming samples renames them in the overview only - in the onclick they are not renamed
  2. when toolbox operation is applied while "side-by-side" view is active, overview gets redrawn but "side-by-side" stays there
  3. same applies for highlight/hide

please checkout this gif for clarification:
newnew

in this gif I check out untouched overview first, check unperturbed side-by-side, and after that try to apply some renaming and also clear the renaming while side-by-side is open

MultiQC Error log:

does not apply - I guess as it is just the interactive javascript issue

File that triggers the error:
I use test data for RSeqC: MultiQC_TestData/data/modules/rseqc

MultiQC run details (please complete the following):

  • Command used to run MultiQC: multiqc --module rseqc --outdir ./ ./MultiQC_TestData/data/modules/rseqc
  • MultiQC Version: v1.9.dev0 (2e16d7e) [latest from master]
  • Operating System: Ubuntu 18.04.1
  • Python Version: Python 3.7.2
  • Method of MultiQC installation: pip

Additional context
First of, thank you for developing MultiQC - it is a really great tool/platform ! great docs !
I'm actually trying to develop a new module - and I was going to copy/paste some of that JavaScript stuff from RSeqC for my module (e.g. http://ummsres37.ad.umassmed.edu:8080/trash/multiqc_report.html#scalings-plots) - doing this I discovered reported misbehavior.

I'm going to PR a fix for this minor RSeqC issue, and see how my JavaScript understanding aligns with "reality"

@ewels
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ewels commented Mar 29, 2020

Thanks @sergpolly - you're finding quite a few good ones here!

@ewels
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ewels commented Apr 29, 2020

Fixed in #1134

@ewels ewels closed this as completed Apr 29, 2020
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Labels
bug: core Bug in the main MultiQC code priority: high
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