From 051225bdd43ac8e0a6762055746be11361b8b56d Mon Sep 17 00:00:00 2001 From: evanbiederstedt Date: Mon, 21 Nov 2022 07:30:57 -0500 Subject: [PATCH] update to v 1.0.1 --- CHANGELOG.md | 6 +++++- DESCRIPTION | 2 +- src/Makevars.win | 2 +- 3 files changed, 7 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 50ead32..2366287 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,4 +1,8 @@ +## [1.0.1] - 2022-Nov-21 -## [1.0.0] - 2022-01-12 +- Removed '-lstdc++' in Makevars + + +## [1.0.0] - 2022-Jan-12 - Version 1.0.0 released, published on CRAN \ No newline at end of file diff --git a/DESCRIPTION b/DESCRIPTION index 21c25b0..9a82042 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: edlibR Title: R Integration for Edlib, the C/C++ Library for Exact Pairwise Sequence Alignment using Edit (Levenshtein) Distance -Version: 1.0.0 +Version: 1.0.1 Authors@R: c(person("Martin", "Šošić", email = "sosic.martin@gmail.com", role = c("aut")), person("Evan", "Biederstedt", email="evan.biederstedt@gmail.com", role=c("aut", "cre"))) Description: Bindings to edlib, a lightweight performant C/C++ library for exact pairwise sequence alignment using edit distance (Levenshtein distance). The algorithm computes the optimal alignment path, but also can be used to find only the start and/or end of the alignment path for convenience. Edlib was designed to be ultrafast and require little memory, with the capability to handle very large sequences. Three alignment methods are supported: global (Needleman-Wunsch), infix (Hybrid Wunsch), and prefix (Semi-Hybrid Wunsch). The original C/C++ library is described in "Edlib: a C/C++ library for fast, exact sequence alignment using edit distance", M. Šošić, M. Šikić, . License: MIT + file LICENSE diff --git a/src/Makevars.win b/src/Makevars.win index 506fbfc..d0f6cec 100644 --- a/src/Makevars.win +++ b/src/Makevars.win @@ -1,3 +1,3 @@ PKG_CXXFLAGS=-I"./include" -PKG_LIBS=-L/usr/lib/ -L"." -lpthread -lstdc++ -lm $(shell "${R_HOME}/bin${R_ARCH_BIN}/Rscript.exe" -e "Rcpp:::LdFlags()") $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) +PKG_LIBS=-L/usr/lib/ -L"." -lpthread -lm $(shell "${R_HOME}/bin${R_ARCH_BIN}/Rscript.exe" -e "Rcpp:::LdFlags()") $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) CXX_STD = CXX11 \ No newline at end of file