From a38fa5d2921940acfd7998f5c367834550c38e32 Mon Sep 17 00:00:00 2001 From: dagou Date: Sun, 29 Sep 2024 09:45:54 +0800 Subject: [PATCH] input files --- README.md | 3 ++- src/args.rs | 1 + 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 68417df..fbe35b1 100644 --- a/README.md +++ b/README.md @@ -379,7 +379,8 @@ Integrates 'splitr', 'annotate', and 'resolve' into a unified workflow for seque Usage: kun_peng classify [OPTIONS] --db --chunk-dir [INPUT_FILES]... Arguments: - [INPUT_FILES]... A list of input file paths (FASTA/FASTQ) to be processed by the classify program. Supports fasta or fastq format files (e.g., .fasta, .fastq) and gzip compressed files (e.g., .fasta.gz, .fastq.gz) + [INPUT_FILES]... A list of input file paths (FASTA/FASTQ) to be processed by the classify program. Supports fasta or fastq format files (e.g., .fasta, .fastq) and gzip compressed files (e.g., .fasta.gz, .fastq.gz). + Can also be a single .txt file containing a list of input file paths, one per line. Options: --db diff --git a/src/args.rs b/src/args.rs index 448f001..7256cc5 100644 --- a/src/args.rs +++ b/src/args.rs @@ -121,6 +121,7 @@ pub struct ClassifyArgs { // pub full_output: bool, /// A list of input file paths (FASTA/FASTQ) to be processed by the classify program. /// Supports fasta or fastq format files (e.g., .fasta, .fastq) and gzip compressed files (e.g., .fasta.gz, .fastq.gz). + /// Can also be a single .txt file containing a list of input file paths, one per line. // #[clap(short = 'F', long = "files")] pub input_files: Vec, }