diff --git a/renv/profiles/lesson-requirements/renv.lock b/renv/profiles/lesson-requirements/renv.lock index 568df2eb..9af9d5c1 100644 --- a/renv/profiles/lesson-requirements/renv.lock +++ b/renv/profiles/lesson-requirements/renv.lock @@ -24,7 +24,8 @@ "NeedsCompilation": "no", "Author": "Dirk Eddelbuettel [aut, cre] (), John W. Emerson [aut], Michael J. Kane [aut] ()", "Maintainer": "Dirk Eddelbuettel ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "DBI": { "Package": "DBI", @@ -187,10 +188,10 @@ }, "Matrix": { "Package": "Matrix", - "Version": "1.7-3", + "Version": "1.7-4", "Source": "Repository", "VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h", - "Date": "2025-03-05", + "Date": "2025-08-27", "Priority": "recommended", "Title": "Sparse and Dense Matrix Classes and Methods", "Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.", @@ -226,13 +227,13 @@ "BuildResaveData": "no", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Douglas Bates [aut] (), Martin Maechler [aut, cre] (), Mikael Jagan [aut] (), Timothy A. Davis [ctb] (, SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (, METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (, GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (02zz1nj61, base R's matrix implementation)", + "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut, cre] (ORCID: ), Mikael Jagan [aut] (ORCID: ), Timothy A. Davis [ctb] (ORCID: , SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (ORCID: , METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (ORCID: , GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (ROR: , base R's matrix implementation)", "Maintainer": "Martin Maechler ", "Repository": "CRAN" }, "QuickJSR": { "Package": "QuickJSR", - "Version": "1.8.0", + "Version": "1.8.1", "Source": "Repository", "Title": "Interface for the 'QuickJS-NG' Lightweight 'JavaScript' Engine", "Authors@R": "c( person(c(\"Andrew\", \"R.\"), \"Johnson\", , \"andrew.johnson@arjohnsonau.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-7000-8065\")), person(\"QuickJS\", \"Authors\", role = c(\"cph\"), comment = \"QuickJS sources and headers\"), person(\"QuickJS-NG\", \"Authors\", role = c(\"cph\"), comment = \"QuickJS-NG sources and headers\") )", @@ -248,7 +249,7 @@ "Encoding": "UTF-8", "Language": "en-AU", "NeedsCompilation": "yes", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "SystemRequirements": "GNU make", "VignetteBuilder": "knitr", "Author": "Andrew R. Johnson [aut, cre] (ORCID: ), QuickJS Authors [cph] (QuickJS sources and headers), QuickJS-NG Authors [cph] (QuickJS-NG sources and headers)", @@ -278,7 +279,8 @@ "URL": "https://github.com/HenrikBengtsson/R.methodsS3", "BugReports": "https://github.com/HenrikBengtsson/R.methodsS3/issues", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "R.oo": { "Package": "R.oo", @@ -305,7 +307,8 @@ "URL": "https://henrikbengtsson.github.io/R.oo/, https://github.com/HenrikBengtsson/R.oo", "BugReports": "https://github.com/HenrikBengtsson/R.oo/issues", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "R.utils": { "Package": "R.utils", @@ -335,7 +338,8 @@ "URL": "https://henrikbengtsson.github.io/R.utils/, https://github.com/HenrikBengtsson/R.utils", "BugReports": "https://github.com/HenrikBengtsson/R.utils/issues", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "R6": { "Package": "R6", @@ -378,14 +382,15 @@ "Description": "Provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org.", "License": "Apache License 2.0", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "Rcpp": { "Package": "Rcpp", - "Version": "1.0.14", + "Version": "1.1.0", "Source": "Repository", "Title": "Seamless R and C++ Integration", - "Date": "2025-01-11", + "Date": "2025-07-01", "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))", "Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at , the paper by Eddelbuettel and Francois (2011, ), the book by Eddelbuettel (2013, ) and the paper by Eddelbuettel and Balamuta (2018, ); see 'citation(\"Rcpp\")' for details.", "Imports": [ @@ -405,7 +410,7 @@ "RoxygenNote": "6.1.1", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), JJ Allaire [aut] (), Kevin Ushey [aut] (), Qiang Kou [aut] (), Nathan Russell [aut], Iñaki Ucar [aut] (), Doug Bates [aut] (), John Chambers [aut]", + "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Romain Francois [aut] (ORCID: ), JJ Allaire [aut] (ORCID: ), Kevin Ushey [aut] (ORCID: ), Qiang Kou [aut] (ORCID: ), Nathan Russell [aut], Iñaki Ucar [aut] (ORCID: ), Doug Bates [aut] (ORCID: ), John Chambers [aut]", "Maintainer": "Dirk Eddelbuettel ", "Repository": "CRAN" }, @@ -444,11 +449,12 @@ "NeedsCompilation": "yes", "Author": "Doug Bates [aut] (), Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), Yixuan Qiu [aut] (), Authors of Eigen [cph] (Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS)", "Maintainer": "Dirk Eddelbuettel ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "RcppParallel": { "Package": "RcppParallel", - "Version": "5.1.10", + "Version": "5.1.11-1", "Source": "Repository", "Type": "Package", "Title": "Parallel Programming Tools for 'Rcpp'", @@ -471,7 +477,7 @@ "RoxygenNote": "7.1.1", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "JJ Allaire [aut], Romain Francois [aut, cph], Kevin Ushey [aut, cre], Gregory Vandenbrouck [aut], Marcus Geelnard [aut, cph] (TinyThread library, https://tinythreadpp.bitsnbites.eu/), Hamada S. Badr [ctb] (), Posit, PBC [cph], Intel [aut, cph] (Intel TBB library, https://www.threadingbuildingblocks.org/), Microsoft [cph]", + "Author": "JJ Allaire [aut], Romain Francois [aut, cph], Kevin Ushey [aut, cre], Gregory Vandenbrouck [aut], Marcus Geelnard [aut, cph] (TinyThread library, https://tinythreadpp.bitsnbites.eu/), Hamada S. Badr [ctb] (ORCID: ), Posit, PBC [cph], Intel [aut, cph] (Intel TBB library, https://www.threadingbuildingblocks.org/), Microsoft [cph]", "Maintainer": "Kevin Ushey ", "Repository": "CRAN" }, @@ -507,7 +513,47 @@ "NeedsCompilation": "no", "Author": "Georgi N. Boshnakov [aut, cre] (), Duncan Murdoch [ctb]", "Maintainer": "Georgi N. Boshnakov ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" + }, + "S7": { + "Package": "S7", + "Version": "0.2.0", + "Source": "Repository", + "Title": "An Object Oriented System Meant to Become a Successor to S3 and S4", + "Authors@R": "c( person(\"Object-Oriented Programming Working Group\", role = \"cph\"), person(\"Davis\", \"Vaughan\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Tomasz\", \"Kalinowski\", role = \"aut\"), person(\"Will\", \"Landau\", role = \"aut\"), person(\"Michael\", \"Lawrence\", role = \"aut\"), person(\"Martin\", \"Maechler\", role = \"aut\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Luke\", \"Tierney\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")) )", + "Description": "A new object oriented programming system designed to be a successor to S3 and S4. It includes formal class, generic, and method specification, and a limited form of multiple dispatch. It has been designed and implemented collaboratively by the R Consortium Object-Oriented Programming Working Group, which includes representatives from R-Core, 'Bioconductor', 'Posit'/'tidyverse', and the wider R community.", + "License": "MIT + file LICENSE", + "URL": "https://rconsortium.github.io/S7/, https://github.com/RConsortium/S7", + "BugReports": "https://github.com/RConsortium/S7/issues", + "Depends": [ + "R (>= 3.5.0)" + ], + "Imports": [ + "utils" + ], + "Suggests": [ + "bench", + "callr", + "covr", + "knitr", + "methods", + "rmarkdown", + "testthat (>= 3.2.0)", + "tibble" + ], + "VignetteBuilder": "knitr", + "Config/build/compilation-database": "true", + "Config/Needs/website": "sloop", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "TRUE", + "Config/testthat/start-first": "external-generic", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "yes", + "Author": "Object-Oriented Programming Working Group [cph], Davis Vaughan [aut], Jim Hester [aut] (), Tomasz Kalinowski [aut], Will Landau [aut], Michael Lawrence [aut], Martin Maechler [aut] (), Luke Tierney [aut], Hadley Wickham [aut, cre] ()", + "Maintainer": "Hadley Wickham ", + "Repository": "https://packagemanager.posit.co/cran/__linux__/jammy/latest" }, "StanHeaders": { "Package": "StanHeaders", @@ -566,7 +612,8 @@ "License": "MIT + file LICENSE", "NeedsCompilation": "no", "Author": "Tony Plate [aut, cre], Richard Heiberger [aut]", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "arm": { "Package": "arm", @@ -598,7 +645,8 @@ "License": "GPL (> 2)", "URL": "https://CRAN.R-project.org/package=arm", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "askpass": { "Package": "askpass", @@ -664,7 +712,8 @@ "License": "GPL-2 | GPL-3", "URL": "http://www.rforge.net/base64enc", "NeedsCompilation": "yes", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "bit": { "Package": "bit", @@ -766,15 +815,15 @@ }, "boot": { "Package": "boot", - "Version": "1.3-31", + "Version": "1.3-32", "Source": "Repository", "Priority": "recommended", - "Date": "2024-08-28", - "Authors@R": "c(person(\"Angelo\", \"Canty\", role = \"aut\", email = \"cantya@mcmaster.ca\", comment = \"author of original code for S\"), person(\"Brian\", \"Ripley\", role = c(\"aut\", \"trl\"), email = \"ripley@stats.ox.ac.uk\", comment = \"conversion to R, maintainer 1999--2022, author of parallel support\"), person(\"Alessandra R.\", \"Brazzale\", role = c(\"ctb\", \"cre\"), email = \"brazzale@stat.unipd.it\", comment = \"minor bug fixes\"))", + "Date": "2025-08-29", + "Authors@R": "c(person(\"Angelo\", \"Canty\", role = \"aut\", email = \"cantya@mcmaster.ca\", comment = \"author of original code for S\"), person(\"Brian\", \"Ripley\", role = c(\"aut\", \"trl\"), email = \"Brian.Ripley@R-project.org\", comment = \"conversion to R, maintainer 1999--2022, author of parallel support\"), person(\"Alessandra R.\", \"Brazzale\", role = c(\"ctb\", \"cre\"), email = \"brazzale@stat.unipd.it\", comment = \"minor bug fixes\"))", "Maintainer": "Alessandra R. Brazzale ", "Note": "Maintainers are not available to give advice on using a package they did not author.", "Description": "Functions and datasets for bootstrapping from the book \"Bootstrap Methods and Their Application\" by A. C. Davison and D. V. Hinkley (1997, CUP), originally written by Angelo Canty for S.", - "Title": "Bootstrap Functions (Originally by Angelo Canty for S)", + "Title": "Bootstrap Functions", "Depends": [ "R (>= 3.0.0)", "graphics", @@ -819,17 +868,17 @@ }, "broom": { "Package": "broom", - "Version": "1.0.8", + "Version": "1.0.10", "Source": "Repository", "Type": "Package", "Title": "Convert Statistical Objects into Tidy Tibbles", - "Authors@R": "c(person(given = \"David\", family = \"Robinson\", role = \"aut\", email = \"admiral.david@gmail.com\"), person(given = \"Alex\", family = \"Hayes\", role = \"aut\", email = \"alexpghayes@gmail.com\", comment = c(ORCID = \"0000-0002-4985-5160\")), person(given = \"Simon\", family = \"Couch\", role = c(\"aut\", \"cre\"), email = \"simon.couch@posit.co\", comment = c(ORCID = \"0000-0001-5676-5107\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(given = \"Indrajeet\", family = \"Patil\", role = \"ctb\", email = 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\"sven.templer@gmail.com\"), person(given = \"Paul-Christian\", family = \"Buerkner\", role = \"ctb\", email = \"paul.buerkner@gmail.com\"), person(given = \"Matthew\", family = \"Kay\", role = \"ctb\", email = \"mjskay@umich.edu\"), person(given = \"Erwan\", family = \"Le Pennec\", role = \"ctb\", email = \"lepennec@gmail.com\"), person(given = \"Johan\", family = \"Junkka\", role = \"ctb\", email = \"johan.junkka@umu.se\"), person(given = \"Hao\", family = \"Zhu\", role = \"ctb\", email = \"haozhu233@gmail.com\"), person(given = \"Benjamin\", family = \"Soltoff\", role = \"ctb\", email = \"soltoffbc@uchicago.edu\"), person(given = \"Zoe\", family = \"Wilkinson Saldana\", role = \"ctb\", email = \"zoewsaldana@gmail.com\"), person(given = \"Tyler\", family = \"Littlefield\", role = \"ctb\", email = \"tylurp1@gmail.com\"), person(given = \"Charles T.\", family = \"Gray\", role = \"ctb\", email = \"charlestigray@gmail.com\"), person(given = \"Shabbh E.\", family = \"Banks\", role = \"ctb\"), person(given = \"Serina\", family = \"Robinson\", role = \"ctb\", email = \"robi0916@umn.edu\"), person(given = \"Roger\", family = \"Bivand\", role = \"ctb\", email = \"Roger.Bivand@nhh.no\"), person(given = \"Riinu\", family = \"Ots\", role = \"ctb\", email = \"riinuots@gmail.com\"), person(given = \"Nicholas\", family = \"Williams\", role = \"ctb\", email = \"ntwilliams.personal@gmail.com\"), person(given = \"Nina\", family = \"Jakobsen\", role = \"ctb\"), person(given = \"Michael\", family = \"Weylandt\", role = \"ctb\", email = \"michael.weylandt@gmail.com\"), person(given = \"Lisa\", family = \"Lendway\", role = \"ctb\", email = \"llendway@macalester.edu\"), person(given = \"Karl\", family = \"Hailperin\", role = \"ctb\", email = \"khailper@gmail.com\"), person(given = \"Josue\", family = \"Rodriguez\", role = \"ctb\", email = \"jerrodriguez@ucdavis.edu\"), person(given = \"Jenny\", family = \"Bryan\", role = \"ctb\", email = \"jenny@posit.co\"), person(given = \"Chris\", family = \"Jarvis\", role = \"ctb\", email = \"Christopher1.jarvis@gmail.com\"), person(given = \"Greg\", family = \"Macfarlane\", role = \"ctb\", email = \"gregmacfarlane@gmail.com\"), person(given = \"Brian\", family = \"Mannakee\", role = \"ctb\", email = \"bmannakee@gmail.com\"), person(given = \"Drew\", family = \"Tyre\", role = \"ctb\", email = \"atyre2@unl.edu\"), person(given = \"Shreyas\", family = \"Singh\", role = \"ctb\", email = \"shreyas.singh.298@gmail.com\"), person(given = \"Laurens\", family = \"Geffert\", role = \"ctb\", email = \"laurensgeffert@gmail.com\"), person(given = \"Hong\", family = \"Ooi\", role = \"ctb\", email = \"hongooi@microsoft.com\"), person(given = \"Henrik\", family = \"Bengtsson\", role = \"ctb\", email = \"henrikb@braju.com\"), person(given = \"Eduard\", family = \"Szocs\", role = \"ctb\", email = \"eduardszoecs@gmail.com\"), person(given = \"David\", family = \"Hugh-Jones\", role = \"ctb\", email = \"davidhughjones@gmail.com\"), person(given = \"Matthieu\", family = \"Stigler\", role = \"ctb\", email = \"Matthieu.Stigler@gmail.com\"), person(given = \"Hugo\", family = \"Tavares\", role = \"ctb\", email = \"hm533@cam.ac.uk\", comment = c(ORCID = \"0000-0001-9373-2726\")), person(given = \"R. Willem\", family = \"Vervoort\", role = \"ctb\", email = \"Willemvervoort@gmail.com\"), person(given = \"Brenton M.\", family = \"Wiernik\", role = \"ctb\", email = \"brenton@wiernik.org\"), person(given = \"Josh\", family = \"Yamamoto\", role = \"ctb\", email = \"joshuayamamoto5@gmail.com\"), person(given = \"Jasme\", family = \"Lee\", role = \"ctb\"), person(given = \"Taren\", family = \"Sanders\", role = \"ctb\", email = \"taren.sanders@acu.edu.au\", comment = c(ORCID = \"0000-0002-4504-6008\")), person(given = \"Ilaria\", family = \"Prosdocimi\", role = \"ctb\", email = \"prosdocimi.ilaria@gmail.com\", comment = c(ORCID = \"0000-0001-8565-094X\")), person(given = \"Daniel D.\", family = \"Sjoberg\", role = \"ctb\", email = \"danield.sjoberg@gmail.com\", comment = c(ORCID = \"0000-0003-0862-2018\")), person(given = \"Alex\", family = \"Reinhart\", role = \"ctb\", email = \"areinhar@stat.cmu.edu\", comment = c(ORCID = \"0000-0002-6658-514X\")))", - "Description": "Summarizes key information about statistical objects in tidy tibbles. This makes it easy to report results, create plots and consistently work with large numbers of models at once. Broom provides three verbs that each provide different types of information about a model. tidy() summarizes information about model components such as coefficients of a regression. glance() reports information about an entire model, such as goodness of fit measures like AIC and BIC. augment() adds information about individual observations to a dataset, such as fitted values or influence measures.", + "Authors@R": "c( person(\"David\", \"Robinson\", , \"admiral.david@gmail.com\", role = \"aut\"), person(\"Alex\", \"Hayes\", , \"alexpghayes@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-4985-5160\")), person(\"Simon\", \"Couch\", , \"simon.couch@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-5676-5107\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Indrajeet\", \"Patil\", , \"patilindrajeet.science@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(\"Derek\", \"Chiu\", , \"dchiu@bccrc.ca\", role = \"ctb\"), person(\"Matthieu\", \"Gomez\", , \"mattg@princeton.edu\", role = \"ctb\"), person(\"Boris\", \"Demeshev\", , \"boris.demeshev@gmail.com\", role = \"ctb\"), person(\"Dieter\", \"Menne\", , \"dieter.menne@menne-biomed.de\", role = \"ctb\"), person(\"Benjamin\", \"Nutter\", , \"nutter@battelle.org\", role = \"ctb\"), person(\"Luke\", \"Johnston\", , \"luke.johnston@mail.utoronto.ca\", role = \"ctb\"), person(\"Ben\", \"Bolker\", , \"bolker@mcmaster.ca\", role = \"ctb\"), person(\"Francois\", \"Briatte\", , \"f.briatte@gmail.com\", role = \"ctb\"), person(\"Jeffrey\", \"Arnold\", , \"jeffrey.arnold@gmail.com\", role = \"ctb\"), person(\"Jonah\", \"Gabry\", , \"jsg2201@columbia.edu\", role = \"ctb\"), person(\"Luciano\", \"Selzer\", , \"luciano.selzer@gmail.com\", role = \"ctb\"), person(\"Gavin\", \"Simpson\", , \"ucfagls@gmail.com\", role = \"ctb\"), person(\"Jens\", \"Preussner\", , \"jens.preussner@mpi-bn.mpg.de\", role = \"ctb\"), person(\"Jay\", \"Hesselberth\", , \"jay.hesselberth@gmail.com\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"ctb\"), person(\"Matthew\", \"Lincoln\", , \"matthew.d.lincoln@gmail.com\", role = \"ctb\"), person(\"Alessandro\", \"Gasparini\", , \"ag475@leicester.ac.uk\", role = \"ctb\"), person(\"Lukasz\", \"Komsta\", , \"lukasz.komsta@umlub.pl\", role = \"ctb\"), person(\"Frederick\", \"Novometsky\", role = \"ctb\"), person(\"Wilson\", \"Freitas\", role = \"ctb\"), person(\"Michelle\", \"Evans\", role = \"ctb\"), person(\"Jason Cory\", \"Brunson\", , \"cornelioid@gmail.com\", role = \"ctb\"), person(\"Simon\", \"Jackson\", , \"drsimonjackson@gmail.com\", role = \"ctb\"), person(\"Ben\", \"Whalley\", , \"ben.whalley@plymouth.ac.uk\", role = \"ctb\"), person(\"Karissa\", \"Whiting\", , \"karissa.whiting@gmail.com\", role = \"ctb\"), person(\"Yves\", \"Rosseel\", , \"yrosseel@gmail.com\", role = \"ctb\"), person(\"Michael\", \"Kuehn\", , \"mkuehn10@gmail.com\", role = \"ctb\"), person(\"Jorge\", \"Cimentada\", , \"cimentadaj@gmail.com\", role = \"ctb\"), person(\"Erle\", \"Holgersen\", , \"erle.holgersen@gmail.com\", role = \"ctb\"), person(\"Karl\", \"Dunkle Werner\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0523-7309\")), person(\"Ethan\", \"Christensen\", , \"christensen.ej@gmail.com\", role = \"ctb\"), person(\"Steven\", \"Pav\", , \"shabbychef@gmail.com\", role = \"ctb\"), person(\"Paul\", \"PJ\", , \"pjpaul.stephens@gmail.com\", role = \"ctb\"), person(\"Ben\", \"Schneider\", , \"benjamin.julius.schneider@gmail.com\", role = \"ctb\"), person(\"Patrick\", \"Kennedy\", , \"pkqstr@protonmail.com\", role = \"ctb\"), person(\"Lily\", \"Medina\", , \"lilymiru@gmail.com\", role = \"ctb\"), person(\"Brian\", \"Fannin\", , \"captain@pirategrunt.com\", role = \"ctb\"), person(\"Jason\", \"Muhlenkamp\", , \"jason.muhlenkamp@gmail.com\", role = \"ctb\"), person(\"Matt\", \"Lehman\", role = \"ctb\"), person(\"Bill\", \"Denney\", , \"wdenney@humanpredictions.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\")), person(\"Nic\", \"Crane\", role = \"ctb\"), person(\"Andrew\", \"Bates\", role = \"ctb\"), person(\"Vincent\", \"Arel-Bundock\", , \"vincent.arel-bundock@umontreal.ca\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2042-7063\")), person(\"Hideaki\", \"Hayashi\", role = \"ctb\"), person(\"Luis\", \"Tobalina\", role = \"ctb\"), person(\"Annie\", \"Wang\", , \"anniewang.uc@gmail.com\", role = \"ctb\"), person(\"Wei Yang\", \"Tham\", , \"weiyang.tham@gmail.com\", role = \"ctb\"), person(\"Clara\", \"Wang\", , \"clara.wang.94@gmail.com\", role = \"ctb\"), person(\"Abby\", \"Smith\", , \"als1@u.northwestern.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3207-0375\")), person(\"Jasper\", \"Cooper\", , \"jaspercooper@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8639-3188\")), person(\"E Auden\", \"Krauska\", , \"krauskae@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-1466-5850\")), person(\"Alex\", \"Wang\", , \"x249wang@uwaterloo.ca\", role = \"ctb\"), person(\"Malcolm\", \"Barrett\", , \"malcolmbarrett@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Charles\", \"Gray\", , \"charlestigray@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9978-011X\")), person(\"Jared\", \"Wilber\", role = \"ctb\"), person(\"Vilmantas\", \"Gegzna\", , \"GegznaV@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9500-5167\")), person(\"Eduard\", \"Szoecs\", , \"eduardszoecs@gmail.com\", role = \"ctb\"), person(\"Frederik\", \"Aust\", , \"frederik.aust@uni-koeln.de\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4900-788X\")), person(\"Angus\", \"Moore\", , \"angusmoore9@gmail.com\", role = \"ctb\"), person(\"Nick\", \"Williams\", , \"ntwilliams.personal@gmail.com\", role = \"ctb\"), person(\"Marius\", \"Barth\", , \"marius.barth.uni.koeln@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3421-6665\")), person(\"Bruna\", \"Wundervald\", , \"brunadaviesw@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8163-220X\")), person(\"Joyce\", \"Cahoon\", , \"joyceyu48@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7217-4702\")), person(\"Grant\", \"McDermott\", , \"grantmcd@uoregon.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7883-8573\")), person(\"Kevin\", \"Zarca\", , \"kevin.zarca@gmail.com\", role = \"ctb\"), person(\"Shiro\", \"Kuriwaki\", , \"shirokuriwaki@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5687-2647\")), person(\"Lukas\", \"Wallrich\", , \"lukas.wallrich@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2121-5177\")), person(\"James\", \"Martherus\", , \"james@martherus.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8285-3300\")), person(\"Chuliang\", \"Xiao\", , \"cxiao@umich.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8466-9398\")), person(\"Joseph\", \"Larmarange\", , \"joseph@larmarange.net\", role = \"ctb\"), person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", , \"michal2992@gmail.com\", role = \"ctb\"), person(\"Hakon\", \"Malmedal\", , \"hmalmedal@gmail.com\", role = \"ctb\"), person(\"Clara\", \"Wang\", role = \"ctb\"), person(\"Sergio\", \"Oller\", , \"sergioller@gmail.com\", role = \"ctb\"), person(\"Luke\", \"Sonnet\", , \"luke.sonnet@gmail.com\", role = \"ctb\"), person(\"Jim\", \"Hester\", , \"jim.hester@posit.co\", role = \"ctb\"), person(\"Ben\", \"Schneider\", , \"benjamin.julius.schneider@gmail.com\", role = \"ctb\"), person(\"Bernie\", \"Gray\", , \"bfgray3@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9190-6032\")), person(\"Mara\", \"Averick\", , \"mara@posit.co\", role = \"ctb\"), person(\"Aaron\", \"Jacobs\", , \"atheriel@gmail.com\", role = \"ctb\"), person(\"Andreas\", \"Bender\", , \"bender.at.R@gmail.com\", role = \"ctb\"), person(\"Sven\", \"Templer\", , \"sven.templer@gmail.com\", role = \"ctb\"), person(\"Paul-Christian\", \"Buerkner\", , \"paul.buerkner@gmail.com\", role = \"ctb\"), person(\"Matthew\", \"Kay\", , \"mjskay@umich.edu\", role = \"ctb\"), person(\"Erwan\", \"Le Pennec\", , \"lepennec@gmail.com\", role = \"ctb\"), person(\"Johan\", \"Junkka\", , \"johan.junkka@umu.se\", role = \"ctb\"), person(\"Hao\", \"Zhu\", , \"haozhu233@gmail.com\", role = \"ctb\"), person(\"Benjamin\", \"Soltoff\", , \"soltoffbc@uchicago.edu\", role = \"ctb\"), person(\"Zoe\", \"Wilkinson Saldana\", , \"zoewsaldana@gmail.com\", role = \"ctb\"), person(\"Tyler\", \"Littlefield\", , \"tylurp1@gmail.com\", role = \"ctb\"), person(\"Charles T.\", \"Gray\", , \"charlestigray@gmail.com\", role = \"ctb\"), person(\"Shabbh E.\", \"Banks\", role = \"ctb\"), person(\"Serina\", \"Robinson\", , \"robi0916@umn.edu\", role = \"ctb\"), person(\"Roger\", \"Bivand\", , \"Roger.Bivand@nhh.no\", role = \"ctb\"), person(\"Riinu\", \"Ots\", , \"riinuots@gmail.com\", role = \"ctb\"), person(\"Nicholas\", \"Williams\", , \"ntwilliams.personal@gmail.com\", role = \"ctb\"), person(\"Nina\", \"Jakobsen\", role = \"ctb\"), person(\"Michael\", \"Weylandt\", , \"michael.weylandt@gmail.com\", role = \"ctb\"), person(\"Lisa\", \"Lendway\", , \"llendway@macalester.edu\", role = \"ctb\"), person(\"Karl\", \"Hailperin\", , \"khailper@gmail.com\", role = \"ctb\"), person(\"Josue\", \"Rodriguez\", , \"jerrodriguez@ucdavis.edu\", role = \"ctb\"), person(\"Jenny\", \"Bryan\", , \"jenny@posit.co\", role = \"ctb\"), person(\"Chris\", \"Jarvis\", , \"Christopher1.jarvis@gmail.com\", role = \"ctb\"), person(\"Greg\", \"Macfarlane\", , \"gregmacfarlane@gmail.com\", role = \"ctb\"), person(\"Brian\", \"Mannakee\", , \"bmannakee@gmail.com\", role = \"ctb\"), person(\"Drew\", \"Tyre\", , \"atyre2@unl.edu\", role = \"ctb\"), person(\"Shreyas\", \"Singh\", , \"shreyas.singh.298@gmail.com\", role = \"ctb\"), person(\"Laurens\", \"Geffert\", , \"laurensgeffert@gmail.com\", role = \"ctb\"), person(\"Hong\", \"Ooi\", , \"hongooi@microsoft.com\", role = \"ctb\"), person(\"Henrik\", \"Bengtsson\", , \"henrikb@braju.com\", role = \"ctb\"), person(\"Eduard\", \"Szocs\", , \"eduardszoecs@gmail.com\", role = \"ctb\"), person(\"David\", \"Hugh-Jones\", , \"davidhughjones@gmail.com\", role = \"ctb\"), person(\"Matthieu\", \"Stigler\", , \"Matthieu.Stigler@gmail.com\", role = \"ctb\"), person(\"Hugo\", \"Tavares\", , \"hm533@cam.ac.uk\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9373-2726\")), person(\"R. Willem\", \"Vervoort\", , \"Willemvervoort@gmail.com\", role = \"ctb\"), person(\"Brenton M.\", \"Wiernik\", , \"brenton@wiernik.org\", role = \"ctb\"), person(\"Josh\", \"Yamamoto\", , \"joshuayamamoto5@gmail.com\", role = \"ctb\"), person(\"Jasme\", \"Lee\", role = \"ctb\"), person(\"Taren\", \"Sanders\", , \"taren.sanders@acu.edu.au\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4504-6008\")), person(\"Ilaria\", \"Prosdocimi\", , \"prosdocimi.ilaria@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8565-094X\")), person(\"Daniel D.\", \"Sjoberg\", , \"danield.sjoberg@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0862-2018\")), person(\"Alex\", \"Reinhart\", , \"areinhar@stat.cmu.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6658-514X\")) )", + "Description": "Summarizes key information about statistical objects in tidy tibbles. This makes it easy to report results, create plots and consistently work with large numbers of models at once. Broom provides three verbs that each provide different types of information about a model. tidy() summarizes information about model components such as coefficients of a regression. glance() reports information about an entire model, such as goodness of fit measures like AIC and BIC. augment() adds information about individual observations to a dataset, such as fitted values or influence measures.", "License": "MIT + file LICENSE", "URL": "https://broom.tidymodels.org/, https://github.com/tidymodels/broom", "BugReports": "https://github.com/tidymodels/broom/issues", "Depends": [ - "R (>= 3.5)" + "R (>= 4.1)" ], "Imports": [ "backports", @@ -863,7 +912,7 @@ "drc", "e1071", "emmeans", - "epiR", + "epiR (>= 2.0.85)", "ergm (>= 3.10.4)", "fixest (>= 0.9.0)", "gam (>= 1.15)", @@ -874,8 +923,8 @@ "glmnetUtils", "gmm", "Hmisc", - "irlba", "interp", + "irlba", "joineRML", "Kendall", "knitr", @@ -914,10 +963,11 @@ "robustbase", "rsample", "sandwich", - "spdep (>= 1.1)", "spatialreg", + "spdep (>= 1.1)", "speedglm", "spelling", + "stats4", "survey", "survival (>= 3.6-4)", "systemfit", @@ -928,13 +978,14 @@ ], "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", "Language": "en-US", + "RoxygenNote": "7.3.3", "Collate": "'aaa-documentation-helper.R' 'null-and-default.R' 'aer.R' 'auc.R' 'base.R' 'bbmle.R' 'betareg.R' 'biglm.R' 'bingroup.R' 'boot.R' 'broom-package.R' 'broom.R' 'btergm.R' 'car.R' 'caret.R' 'cluster.R' 'cmprsk.R' 'data-frame.R' 'deprecated-0-7-0.R' 'drc.R' 'emmeans.R' 'epiR.R' 'ergm.R' 'fixest.R' 'gam.R' 'geepack.R' 'glmnet-cv-glmnet.R' 'glmnet-glmnet.R' 'gmm.R' 'hmisc.R' 'import-standalone-obj-type.R' 'import-standalone-types-check.R' 'joinerml.R' 'kendall.R' 'ks.R' 'lavaan.R' 'leaps.R' 'lfe.R' 'list-irlba.R' 'list-optim.R' 'list-svd.R' 'list-xyz.R' 'list.R' 'lm-beta.R' 'lmodel2.R' 'lmtest.R' 'maps.R' 'margins.R' 'mass-fitdistr.R' 'mass-negbin.R' 'mass-polr.R' 'mass-ridgelm.R' 'stats-lm.R' 'mass-rlm.R' 'mclust.R' 'mediation.R' 'metafor.R' 'mfx.R' 'mgcv.R' 'mlogit.R' 'muhaz.R' 'multcomp.R' 'nnet.R' 'nobs.R' 'ordinal-clm.R' 'ordinal-clmm.R' 'plm.R' 'polca.R' 'psych.R' 'stats-nls.R' 'quantreg-nlrq.R' 'quantreg-rq.R' 'quantreg-rqs.R' 'robust-glmrob.R' 'robust-lmrob.R' 'robustbase-glmrob.R' 'robustbase-lmrob.R' 'sp.R' 'spdep.R' 'speedglm-speedglm.R' 'speedglm-speedlm.R' 'stats-anova.R' 'stats-arima.R' 'stats-decompose.R' 'stats-factanal.R' 'stats-glm.R' 'stats-htest.R' 'stats-kmeans.R' 'stats-loess.R' 'stats-mlm.R' 'stats-prcomp.R' 'stats-smooth.spline.R' 'stats-summary-lm.R' 'stats-time-series.R' 'survey.R' 'survival-aareg.R' 'survival-cch.R' 'survival-coxph.R' 'survival-pyears.R' 'survival-survdiff.R' 'survival-survexp.R' 'survival-survfit.R' 'survival-survreg.R' 'systemfit.R' 'tseries.R' 'utilities.R' 'vars.R' 'zoo.R' 'zzz.R'", - "Config/testthat/edition": "3", "NeedsCompilation": "no", - "Author": "David Robinson [aut], Alex Hayes [aut] (), Simon Couch [aut, cre] (), Posit Software, PBC [cph, fnd], Indrajeet Patil [ctb] (), Derek Chiu [ctb], Matthieu Gomez [ctb], Boris Demeshev [ctb], Dieter Menne [ctb], Benjamin Nutter [ctb], Luke Johnston [ctb], Ben Bolker [ctb], Francois Briatte [ctb], Jeffrey Arnold [ctb], Jonah Gabry [ctb], Luciano Selzer [ctb], Gavin Simpson [ctb], Jens Preussner [ctb], Jay Hesselberth [ctb], Hadley Wickham [ctb], Matthew Lincoln [ctb], Alessandro Gasparini [ctb], Lukasz Komsta [ctb], Frederick Novometsky [ctb], Wilson Freitas [ctb], Michelle Evans [ctb], Jason Cory Brunson [ctb], Simon Jackson [ctb], Ben Whalley [ctb], Karissa Whiting [ctb], Yves Rosseel [ctb], Michael Kuehn [ctb], Jorge Cimentada [ctb], Erle Holgersen [ctb], Karl Dunkle Werner [ctb] (), Ethan Christensen [ctb], Steven Pav [ctb], Paul PJ [ctb], Ben Schneider [ctb], Patrick Kennedy [ctb], Lily Medina [ctb], Brian Fannin [ctb], Jason Muhlenkamp [ctb], Matt Lehman [ctb], Bill Denney [ctb] (), Nic Crane [ctb], Andrew Bates [ctb], Vincent Arel-Bundock [ctb] (), Hideaki Hayashi [ctb], Luis Tobalina [ctb], Annie Wang [ctb], Wei Yang Tham [ctb], Clara Wang [ctb], Abby Smith [ctb] (), Jasper Cooper [ctb] (), E Auden Krauska [ctb] (), Alex Wang [ctb], Malcolm Barrett [ctb] (), Charles Gray [ctb] (), Jared Wilber [ctb], Vilmantas Gegzna [ctb] (), Eduard Szoecs [ctb], Frederik Aust [ctb] (), Angus Moore [ctb], Nick Williams [ctb], Marius Barth [ctb] (), Bruna Wundervald [ctb] (), Joyce Cahoon [ctb] (), Grant McDermott [ctb] (), Kevin Zarca [ctb], Shiro Kuriwaki [ctb] (), Lukas Wallrich [ctb] (), James Martherus [ctb] (), Chuliang Xiao [ctb] (), Joseph Larmarange [ctb], Max Kuhn [ctb], Michal Bojanowski [ctb], Hakon Malmedal [ctb], Clara Wang [ctb], Sergio Oller [ctb], Luke Sonnet [ctb], Jim Hester [ctb], Ben Schneider [ctb], Bernie Gray [ctb] (), Mara Averick [ctb], Aaron Jacobs [ctb], Andreas Bender [ctb], Sven Templer [ctb], Paul-Christian Buerkner [ctb], Matthew Kay [ctb], Erwan Le Pennec [ctb], Johan Junkka [ctb], Hao Zhu [ctb], Benjamin Soltoff [ctb], Zoe Wilkinson Saldana [ctb], Tyler Littlefield [ctb], Charles T. Gray [ctb], Shabbh E. Banks [ctb], Serina Robinson [ctb], Roger Bivand [ctb], Riinu Ots [ctb], Nicholas Williams [ctb], Nina Jakobsen [ctb], Michael Weylandt [ctb], Lisa Lendway [ctb], Karl Hailperin [ctb], Josue Rodriguez [ctb], Jenny Bryan [ctb], Chris Jarvis [ctb], Greg Macfarlane [ctb], Brian Mannakee [ctb], Drew Tyre [ctb], Shreyas Singh [ctb], Laurens Geffert [ctb], Hong Ooi [ctb], Henrik Bengtsson [ctb], Eduard Szocs [ctb], David Hugh-Jones [ctb], Matthieu Stigler [ctb], Hugo Tavares [ctb] (), R. Willem Vervoort [ctb], Brenton M. Wiernik [ctb], Josh Yamamoto [ctb], Jasme Lee [ctb], Taren Sanders [ctb] (), Ilaria Prosdocimi [ctb] (), Daniel D. Sjoberg [ctb] (), Alex Reinhart [ctb] ()", + "Author": "David Robinson [aut], Alex Hayes [aut] (ORCID: ), Simon Couch [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: ), Indrajeet Patil [ctb] (ORCID: ), Derek Chiu [ctb], Matthieu Gomez [ctb], Boris Demeshev [ctb], Dieter Menne [ctb], Benjamin Nutter [ctb], Luke Johnston [ctb], Ben Bolker [ctb], Francois Briatte [ctb], Jeffrey Arnold [ctb], Jonah Gabry [ctb], Luciano Selzer [ctb], Gavin Simpson [ctb], Jens Preussner [ctb], Jay Hesselberth [ctb], Hadley Wickham [ctb], Matthew Lincoln [ctb], Alessandro Gasparini [ctb], Lukasz Komsta [ctb], Frederick Novometsky [ctb], Wilson Freitas [ctb], Michelle Evans [ctb], Jason Cory Brunson [ctb], Simon Jackson [ctb], Ben Whalley [ctb], Karissa Whiting [ctb], Yves Rosseel [ctb], Michael Kuehn [ctb], Jorge Cimentada [ctb], Erle Holgersen [ctb], Karl Dunkle Werner [ctb] (ORCID: ), Ethan Christensen [ctb], Steven Pav [ctb], Paul PJ [ctb], Ben Schneider [ctb], Patrick Kennedy [ctb], Lily Medina [ctb], Brian Fannin [ctb], Jason Muhlenkamp [ctb], Matt Lehman [ctb], Bill Denney [ctb] (ORCID: ), Nic Crane [ctb], Andrew Bates [ctb], Vincent Arel-Bundock [ctb] (ORCID: ), Hideaki Hayashi [ctb], Luis Tobalina [ctb], Annie Wang [ctb], Wei Yang Tham [ctb], Clara Wang [ctb], Abby Smith [ctb] (ORCID: ), Jasper Cooper [ctb] (ORCID: ), E Auden Krauska [ctb] (ORCID: ), Alex Wang [ctb], Malcolm Barrett [ctb] (ORCID: ), Charles Gray [ctb] (ORCID: ), Jared Wilber [ctb], Vilmantas Gegzna [ctb] (ORCID: ), Eduard Szoecs [ctb], Frederik Aust [ctb] (ORCID: ), Angus Moore [ctb], Nick Williams [ctb], Marius Barth [ctb] (ORCID: ), Bruna Wundervald [ctb] (ORCID: ), Joyce Cahoon [ctb] (ORCID: ), Grant McDermott [ctb] (ORCID: ), Kevin Zarca [ctb], Shiro Kuriwaki [ctb] (ORCID: ), Lukas Wallrich [ctb] (ORCID: ), James Martherus [ctb] (ORCID: ), Chuliang Xiao [ctb] (ORCID: ), Joseph Larmarange [ctb], Max Kuhn [ctb], Michal Bojanowski [ctb], Hakon Malmedal [ctb], Clara Wang [ctb], Sergio Oller [ctb], Luke Sonnet [ctb], Jim Hester [ctb], Ben Schneider [ctb], Bernie Gray [ctb] (ORCID: ), Mara Averick [ctb], Aaron Jacobs [ctb], Andreas Bender [ctb], Sven Templer [ctb], Paul-Christian Buerkner [ctb], Matthew Kay [ctb], Erwan Le Pennec [ctb], Johan Junkka [ctb], Hao Zhu [ctb], Benjamin Soltoff [ctb], Zoe Wilkinson Saldana [ctb], Tyler Littlefield [ctb], Charles T. Gray [ctb], Shabbh E. Banks [ctb], Serina Robinson [ctb], Roger Bivand [ctb], Riinu Ots [ctb], Nicholas Williams [ctb], Nina Jakobsen [ctb], Michael Weylandt [ctb], Lisa Lendway [ctb], Karl Hailperin [ctb], Josue Rodriguez [ctb], Jenny Bryan [ctb], Chris Jarvis [ctb], Greg Macfarlane [ctb], Brian Mannakee [ctb], Drew Tyre [ctb], Shreyas Singh [ctb], Laurens Geffert [ctb], Hong Ooi [ctb], Henrik Bengtsson [ctb], Eduard Szocs [ctb], David Hugh-Jones [ctb], Matthieu Stigler [ctb], Hugo Tavares [ctb] (ORCID: ), R. Willem Vervoort [ctb], Brenton M. Wiernik [ctb], Josh Yamamoto [ctb], Jasme Lee [ctb], Taren Sanders [ctb] (ORCID: ), Ilaria Prosdocimi [ctb] (ORCID: ), Daniel D. Sjoberg [ctb] (ORCID: ), Alex Reinhart [ctb] (ORCID: )", "Maintainer": "Simon Couch ", "Repository": "CRAN" }, @@ -1090,7 +1141,8 @@ "NeedsCompilation": "no", "Author": "Jennifer Bryan [cre, aut], Hadley Wickham [ctb]", "Maintainer": "Jennifer Bryan ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "cfr": { "Package": "cfr", @@ -1141,7 +1193,7 @@ }, "checkmate": { "Package": "checkmate", - "Version": "2.3.2", + "Version": "2.3.3", "Source": "Repository", "Type": "Package", "Title": "Fast and Versatile Argument Checks", @@ -1178,7 +1230,7 @@ "VignetteBuilder": "knitr", "RoxygenNote": "7.3.2", "Collate": "'AssertCollection.R' 'allMissing.R' 'anyInfinite.R' 'anyMissing.R' 'anyNaN.R' 'asInteger.R' 'assert.R' 'helper.R' 'makeExpectation.R' 'makeTest.R' 'makeAssertion.R' 'checkAccess.R' 'checkArray.R' 'checkAtomic.R' 'checkAtomicVector.R' 'checkCharacter.R' 'checkChoice.R' 'checkClass.R' 'checkComplex.R' 'checkCount.R' 'checkDataFrame.R' 'checkDataTable.R' 'checkDate.R' 'checkDirectoryExists.R' 'checkDisjunct.R' 'checkDouble.R' 'checkEnvironment.R' 'checkFALSE.R' 'checkFactor.R' 'checkFileExists.R' 'checkFlag.R' 'checkFormula.R' 'checkFunction.R' 'checkInt.R' 'checkInteger.R' 'checkIntegerish.R' 'checkList.R' 'checkLogical.R' 'checkMatrix.R' 'checkMultiClass.R' 'checkNamed.R' 'checkNames.R' 'checkNull.R' 'checkNumber.R' 'checkNumeric.R' 'checkOS.R' 'checkPOSIXct.R' 'checkPathForOutput.R' 'checkPermutation.R' 'checkR6.R' 'checkRaw.R' 'checkScalar.R' 'checkScalarNA.R' 'checkSetEqual.R' 'checkString.R' 'checkSubset.R' 'checkTRUE.R' 'checkTibble.R' 'checkVector.R' 'coalesce.R' 'isIntegerish.R' 'matchArg.R' 'qassert.R' 'qassertr.R' 'vname.R' 'wfwl.R' 'zzz.R'", - "Author": "Michel Lang [cre, aut] (), Bernd Bischl [ctb], Dénes Tóth [ctb] ()", + "Author": "Michel Lang [cre, aut] (ORCID: ), Bernd Bischl [ctb], Dénes Tóth [ctb] (ORCID: )", "Maintainer": "Michel Lang ", "Repository": "CRAN" }, @@ -1249,10 +1301,10 @@ }, "cleanepi": { "Package": "cleanepi", - "Version": "1.1.0", + "Version": "1.1.1", "Source": "Repository", "Title": "Clean and Standardize Epidemiological Data", - "Authors@R": "c( person(\"Karim\", \"Mané\", , \"karim.mane@lshtm.ac.uk\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-9892-2999\")), person(\"Thibaut\", \"Jombart\", , \"thibautjombart@gmail.com\", role = \"ctb\", comment = \"Thibault contributed in development of date_guess().\"), person(\"Abdoelnaser\", \"Degoot\", , \"abdoelnaser-mahmood.degoot@lshtm.ac.uk\", role = \"aut\", comment = c(ORCID = \"0000-0001-8788-2496\")), person(\"Bankolé\", \"Ahadzie\", , \"Bankole.Ahadzie@lshtm.ac.uk\", role = \"aut\"), person(\"Nuredin\", \"Mohammed\", , \"Nuredin.Mohammed@lshtm.ac.uk\", role = \"aut\"), person(\"Bubacarr\", \"Bah\", , \"Bubacarr.Bah1@lshtm.ac.uk\", role = \"aut\", comment = c(ORCID = \"0000-0003-3318-6668\")), person(\"Hugo\", \"Gruson\", , \"hugo@data.org\", role = c(\"ctb\", \"rev\"), comment = c(ORCID = \"0000-0002-4094-1476\")), person(\"Pratik R.\", \"Gupte\", , \"pratik.gupte@lshtm.ac.uk\", role = \"rev\", comment = c(ORCID = \"0000-0001-5294-7819\")), person(\"James M.\", \"Azam\", , \"james.azam@lshtm.ac.uk\", role = \"rev\", comment = c(ORCID = \"0000-0001-5782-7330\")), person(\"Joshua W.\", \"Lambert\", , \"joshua.lambert@lshtm.ac.uk\", role = \"rev\", comment = c(ORCID = \"0000-0001-5218-3046\")), person(\"Chris\", \"Hartgerink\", , \"chris@data.org\", role = \"rev\", comment = c(ORCID = \"0000-0003-1050-6809\")), person(\"Andree\", \"Valle-Campos\", , \"avallecam@gmail.com\", role = c(\"rev\", \"ctb\"), comment = c(ORCID = \"0000-0002-7779-481X\")), person(\"London School of Hygiene and Tropical Medicine, LSHTM\", role = \"cph\", comment = c(ROR = \"00a0jsq62\")), person(\"data.org\", role = \"fnd\") )", + "Authors@R": "c( person(\"Karim\", \"Mané\", , \"karim.mane@lshtm.ac.uk\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-9892-2999\")), person(\"Thibaut\", \"Jombart\", , \"thibautjombart@gmail.com\", role = \"ctb\", comment = \"Thibault contributed in development of date_guess().\"), person(\"Abdoelnaser\", \"Degoot\", , \"abdoelnaser-mahmood.degoot@lshtm.ac.uk\", role = \"aut\", comment = c(ORCID = \"0000-0001-8788-2496\")), person(\"Bankolé\", \"Ahadzie\", , \"Bankole.Ahadzie@lshtm.ac.uk\", role = \"aut\"), person(\"Nuredin\", \"Mohammed\", , \"Nuredin.Mohammed@lshtm.ac.uk\", role = \"aut\"), person(\"Bubacarr\", \"Bah\", , \"Bubacarr.Bah1@lshtm.ac.uk\", role = \"aut\", comment = c(ORCID = \"0000-0003-3318-6668\")), person(\"Hugo\", \"Gruson\", , \"hugo@data.org\", role = c(\"ctb\", \"rev\"), comment = c(ORCID = \"0000-0002-4094-1476\")), person(\"Pratik R.\", \"Gupte\", , \"pratik.gupte@lshtm.ac.uk\", role = \"rev\", comment = c(ORCID = \"0000-0001-5294-7819\")), person(\"James M.\", \"Azam\", , \"james.azam@lshtm.ac.uk\", role = \"rev\", comment = c(ORCID = \"0000-0001-5782-7330\")), person(\"Joshua W.\", \"Lambert\", , \"joshua.lambert@lshtm.ac.uk\", role = c(\"rev\", \"ctb\"), comment = c(ORCID = \"0000-0001-5218-3046\")), person(\"Chris\", \"Hartgerink\", , \"chris@data.org\", role = \"rev\", comment = c(ORCID = \"0000-0003-1050-6809\")), person(\"Andree\", \"Valle-Campos\", , \"avallecam@gmail.com\", role = c(\"rev\", \"ctb\"), comment = c(ORCID = \"0000-0002-7779-481X\")), person(\"London School of Hygiene and Tropical Medicine, LSHTM\", role = \"cph\", comment = c(ROR = \"00a0jsq62\")), person(\"data.org\", role = \"fnd\") )", "Description": "Cleaning and standardizing tabular data package, tailored specifically for curating epidemiological data. It streamlines various data cleaning tasks that are typically expected when working with datasets in epidemiology. It returns the processed data in the same format, and generates a comprehensive report detailing the outcomes of each cleaning task.", "License": "MIT + file LICENSE", "URL": "https://epiverse-trace.github.io/cleanepi/, https://github.com/epiverse-trace/cleanepi", @@ -1284,6 +1336,7 @@ "reactable", "rmarkdown", "spelling", + "systemfonts", "testthat (>= 3.0.0)" ], "VignetteBuilder": "knitr", @@ -1295,7 +1348,7 @@ "LazyData": "true", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", - "Author": "Karim Mané [aut, cre] (), Thibaut Jombart [ctb] (Thibault contributed in development of date_guess().), Abdoelnaser Degoot [aut] (), Bankolé Ahadzie [aut], Nuredin Mohammed [aut], Bubacarr Bah [aut] (), Hugo Gruson [ctb, rev] (), Pratik R. Gupte [rev] (), James M. Azam [rev] (), Joshua W. Lambert [rev] (), Chris Hartgerink [rev] (), Andree Valle-Campos [rev, ctb] (), London School of Hygiene and Tropical Medicine, LSHTM [cph] (00a0jsq62), data.org [fnd]", + "Author": "Karim Mané [aut, cre] (ORCID: ), Thibaut Jombart [ctb] (Thibault contributed in development of date_guess().), Abdoelnaser Degoot [aut] (ORCID: ), Bankolé Ahadzie [aut], Nuredin Mohammed [aut], Bubacarr Bah [aut] (ORCID: ), Hugo Gruson [ctb, rev] (ORCID: ), Pratik R. Gupte [rev] (ORCID: ), James M. Azam [rev] (ORCID: ), Joshua W. Lambert [rev, ctb] (ORCID: ), Chris Hartgerink [rev] (ORCID: ), Andree Valle-Campos [rev, ctb] (ORCID: ), London School of Hygiene and Tropical Medicine, LSHTM [cph] (ROR: ), data.org [fnd]", "Maintainer": "Karim Mané ", "Repository": "CRAN" }, @@ -1395,13 +1448,14 @@ "NeedsCompilation": "no", "Author": "Martyn Plummer [aut, cre, trl], Nicky Best [aut], Kate Cowles [aut], Karen Vines [aut], Deepayan Sarkar [aut], Douglas Bates [aut], Russell Almond [aut], Arni Magnusson [aut]", "Maintainer": "Martyn Plummer ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "colorspace": { "Package": "colorspace", - "Version": "2.1-1", + "Version": "2.1-2", "Source": "Repository", - "Date": "2024-07-26", + "Date": "2025-09-22", "Title": "A Toolbox for Manipulating and Assessing Colors and Palettes", "Authors@R": "c(person(given = \"Ross\", family = \"Ihaka\", role = \"aut\", email = \"ihaka@stat.auckland.ac.nz\"), person(given = \"Paul\", family = \"Murrell\", role = \"aut\", email = \"paul@stat.auckland.ac.nz\", comment = c(ORCID = \"0000-0002-3224-8858\")), person(given = \"Kurt\", family = \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(given = c(\"Jason\", \"C.\"), family = \"Fisher\", role = \"aut\", email = \"jfisher@usgs.gov\", comment = c(ORCID = \"0000-0001-9032-8912\")), person(given = \"Reto\", family = \"Stauffer\", role = \"aut\", email = \"Reto.Stauffer@uibk.ac.at\", comment = c(ORCID = \"0000-0002-3798-5507\")), person(given = c(\"Claus\", \"O.\"), family = \"Wilke\", role = \"aut\", email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(given = c(\"Claire\", \"D.\"), family = \"McWhite\", role = \"aut\", email = \"claire.mcwhite@utmail.utexas.edu\", comment = c(ORCID = \"0000-0001-7346-3047\")), person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")))", "Description": "Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided along with corresponding ggplot2 color scales. Color palette choice is aided by an interactive app (with either a Tcl/Tk or a shiny graphical user interface) and shiny apps with an HCL color picker and a color vision deficiency emulator. Plotting functions for displaying and assessing palettes include color swatches, visualizations of the HCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation functions include: desaturation, lightening/darkening, mixing, and simulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly). Details can be found on the project web page at and in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical Software, ).", @@ -1445,9 +1499,9 @@ "BugReports": "https://colorspace.R-Forge.R-project.org/contact.html", "LazyData": "yes", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.2", "NeedsCompilation": "yes", - "Author": "Ross Ihaka [aut], Paul Murrell [aut] (), Kurt Hornik [aut] (), Jason C. Fisher [aut] (), Reto Stauffer [aut] (), Claus O. Wilke [aut] (), Claire D. McWhite [aut] (), Achim Zeileis [aut, cre] ()", + "Author": "Ross Ihaka [aut], Paul Murrell [aut] (ORCID: ), Kurt Hornik [aut] (ORCID: ), Jason C. Fisher [aut] (ORCID: ), Reto Stauffer [aut] (ORCID: ), Claus O. Wilke [aut] (ORCID: ), Claire D. McWhite [aut] (ORCID: ), Achim Zeileis [aut, cre] (ORCID: )", "Maintainer": "Achim Zeileis ", "Repository": "CRAN" }, @@ -1598,13 +1652,15 @@ }, "crosstalk": { "Package": "crosstalk", - "Version": "1.2.1", + "Version": "1.2.2", "Source": "Repository", "Type": "Package", "Title": "Inter-Widget Interactivity for HTML Widgets", - "Authors@R": "c( person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@posit.co\"), person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@posit.co\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Kristopher Michael\", \"Kowal\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(family = \"es5-shim contributors\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\") )", + "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(, \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Kristopher Michael\", \"Kowal\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(, \"es5-shim contributors\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\") )", "Description": "Provides building blocks for allowing HTML widgets to communicate with each other, with Shiny or without (i.e. static .html files). Currently supports linked brushing and filtering.", "License": "MIT + file LICENSE", + "URL": "https://rstudio.github.io/crosstalk/, https://github.com/rstudio/crosstalk", + "BugReports": "https://github.com/rstudio/crosstalk/issues", "Imports": [ "htmltools (>= 0.3.6)", "jsonlite", @@ -1612,24 +1668,23 @@ "R6" ], "Suggests": [ - "shiny", + "bslib", "ggplot2", - "testthat (>= 2.1.0)", "sass", - "bslib" + "shiny", + "testthat (>= 2.1.0)" ], - "URL": "https://rstudio.github.io/crosstalk/, https://github.com/rstudio/crosstalk", - "BugReports": "https://github.com/rstudio/crosstalk/issues", - "RoxygenNote": "7.2.3", + "Config/Needs/website": "jcheng5/d3scatter, DT, leaflet, rmarkdown", "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", "NeedsCompilation": "no", - "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (), Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Brian Reavis [ctb, cph] (selectize.js library), Kristopher Michael Kowal [ctb, cph] (es5-shim library), es5-shim contributors [ctb, cph] (es5-shim library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library)", + "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Brian Reavis [ctb, cph] (selectize.js library), Kristopher Michael Kowal [ctb, cph] (es5-shim library), es5-shim contributors [ctb, cph] (es5-shim library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library)", "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, "curl": { "Package": "curl", - "Version": "6.4.0", + "Version": "7.0.0", "Source": "Repository", "Type": "Package", "Title": "A Modern and Flexible Web Client for R", @@ -1653,7 +1708,7 @@ "Depends": [ "R (>= 3.0.0)" ], - "RoxygenNote": "7.3.2.9000", + "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "Language": "en-US", "NeedsCompilation": "yes", @@ -1663,7 +1718,7 @@ }, "data.table": { "Package": "data.table", - "Version": "1.17.6", + "Version": "1.17.8", "Source": "Repository", "Title": "Extension of `data.frame`", "Depends": [ @@ -1697,7 +1752,7 @@ }, "dbplyr": { "Package": "dbplyr", - "Version": "2.5.0", + "Version": "2.5.1", "Source": "Repository", "Type": "Package", "Title": "A 'dplyr' Back End for Databases", @@ -1740,7 +1795,7 @@ "rmarkdown", "RPostgres (>= 1.4.5)", "RPostgreSQL", - "RSQLite (>= 2.3.1)", + "RSQLite (>= 2.3.8)", "testthat (>= 3.1.10)" ], "VignetteBuilder": "knitr", @@ -1749,7 +1804,7 @@ "Config/testthat/parallel": "TRUE", "Encoding": "UTF-8", "Language": "en-gb", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.3", "Collate": "'db-sql.R' 'utils-check.R' 'import-standalone-types-check.R' 'import-standalone-obj-type.R' 'utils.R' 'sql.R' 'escape.R' 'translate-sql-cut.R' 'translate-sql-quantile.R' 'translate-sql-string.R' 'translate-sql-paste.R' 'translate-sql-helpers.R' 'translate-sql-window.R' 'translate-sql-conditional.R' 'backend-.R' 'backend-access.R' 'backend-hana.R' 'backend-hive.R' 'backend-impala.R' 'verb-copy-to.R' 'backend-mssql.R' 'backend-mysql.R' 'backend-odbc.R' 'backend-oracle.R' 'backend-postgres.R' 'backend-postgres-old.R' 'backend-redshift.R' 'backend-snowflake.R' 'backend-spark-sql.R' 'backend-sqlite.R' 'backend-teradata.R' 'build-sql.R' 'data-cache.R' 'data-lahman.R' 'data-nycflights13.R' 'db-escape.R' 'db-io.R' 'db.R' 'dbplyr.R' 'explain.R' 'ident.R' 'import-standalone-s3-register.R' 'join-by-compat.R' 'join-cols-compat.R' 'lazy-join-query.R' 'lazy-ops.R' 'lazy-query.R' 'lazy-select-query.R' 'lazy-set-op-query.R' 'memdb.R' 'optimise-utils.R' 'pillar.R' 'progress.R' 'sql-build.R' 'query-join.R' 'query-select.R' 'query-semi-join.R' 'query-set-op.R' 'query.R' 'reexport.R' 'remote.R' 'rows.R' 'schema.R' 'simulate.R' 'sql-clause.R' 'sql-expr.R' 'src-sql.R' 'src_dbi.R' 'table-name.R' 'tbl-lazy.R' 'tbl-sql.R' 'test-frame.R' 'testthat.R' 'tidyeval-across.R' 'tidyeval.R' 'translate-sql.R' 'utils-format.R' 'verb-arrange.R' 'verb-compute.R' 'verb-count.R' 'verb-distinct.R' 'verb-do-query.R' 'verb-do.R' 'verb-expand.R' 'verb-fill.R' 'verb-filter.R' 'verb-group_by.R' 'verb-head.R' 'verb-joins.R' 'verb-mutate.R' 'verb-pivot-longer.R' 'verb-pivot-wider.R' 'verb-pull.R' 'verb-select.R' 'verb-set-ops.R' 'verb-slice.R' 'verb-summarise.R' 'verb-uncount.R' 'verb-window.R' 'zzz.R'", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut, cre], Maximilian Girlich [aut], Edgar Ruiz [aut], Posit Software, PBC [cph, fnd]", @@ -1782,7 +1837,8 @@ "URL": "http://desolve.r-forge.r-project.org/", "LazyData": "yes", "NeedsCompilation": "yes", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "desc": { "Package": "desc", @@ -1905,7 +1961,8 @@ "NeedsCompilation": "no", "Author": "Steph Locke [cre], Rich FitzJohn [aut], Anne Cori [aut], Thibaut Jombart [aut]", "Maintainer": "Steph Locke ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "distributional": { "Package": "distributional", @@ -2011,7 +2068,7 @@ }, "dtplyr": { "Package": "dtplyr", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Title": "Data Table Back-End for 'dplyr'", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"cre\", \"aut\")), person(\"Maximilian\", \"Girlich\", role = \"aut\"), person(\"Mark\", \"Fairbanks\", role = \"aut\"), person(\"Ryan\", \"Dickerson\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -2020,7 +2077,7 @@ "URL": "https://dtplyr.tidyverse.org, https://github.com/tidyverse/dtplyr", "BugReports": "https://github.com/tidyverse/dtplyr/issues", "Depends": [ - "R (>= 3.3)" + "R (>= 4.0)" ], "Imports": [ "cli (>= 3.4.0)", @@ -2046,7 +2103,7 @@ "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "no", "Author": "Hadley Wickham [cre, aut], Maximilian Girlich [aut], Mark Fairbanks [aut], Ryan Dickerson [aut], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", @@ -2205,16 +2262,15 @@ "Language": "en-GB", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", + "Author": "Pratik Gupte [aut, cph] (ORCID: ), Rosalind Eggo [aut, cph, cre] (ORCID: ), Edwin Van Leeuwen [aut, cph] (ORCID: ), Adam Kucharski [ctb, rev] (ORCID: ), Tim Taylor [ctb, rev] (ORCID: ), Banky Ahadzie [ctb], Alexis Robert [ctb] (ORCID: ), Hugo Gruson [rev] (ORCID: ), Joshua W. Lambert [rev] (ORCID: ), James M. Azam [rev] (ORCID: ), Alexis Robert [rev] (ORCID: )", + "Maintainer": "Rosalind Eggo ", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteRepo": "epidemics", "RemoteUsername": "epiverse-trace", "RemotePkgRef": "epiverse-trace/epidemics", "RemoteRef": "HEAD", - "RemoteSha": "376ac8fa2602f2d3c75f947e874476fd16dedd5b", - "NeedsCompilation": "yes", - "Author": "Pratik Gupte [aut, cph] (ORCID: ), Rosalind Eggo [aut, cph, cre] (ORCID: ), Edwin Van Leeuwen [aut, cph] (ORCID: ), Adam Kucharski [ctb, rev] (ORCID: ), Tim Taylor [ctb, rev] (ORCID: ), Banky Ahadzie [ctb], Alexis Robert [ctb] (ORCID: ), Hugo Gruson [rev] (ORCID: ), Joshua W. Lambert [rev] (ORCID: ), James M. Azam [rev] (ORCID: ), Alexis Robert [rev] (ORCID: )", - "Maintainer": "Rosalind Eggo " + "RemoteSha": "376ac8fa2602f2d3c75f947e874476fd16dedd5b" }, "epiparameter": { "Package": "epiparameter", @@ -2305,7 +2361,7 @@ }, "evaluate": { "Package": "evaluate", - "Version": "1.0.4", + "Version": "1.0.5", "Source": "Repository", "Type": "Package", "Title": "Parsing and Evaluation Tools that Provide More Details than the Default", @@ -2384,7 +2440,7 @@ }, "fastymd": { "Package": "fastymd", - "Version": "0.1.3", + "Version": "0.1.4", "Source": "Repository", "Title": "Fast Utilities for Year Month Day Objects", "Authors@R": "c( person( given = \"Tim\", family = \"Taylor\", role = c(\"aut\", \"cre\"), email = \"tim.taylor@hiddenelephants.co.uk\", comment = c(ORCID = \"0000-0002-8587-7113\") ), person( given = \"Howard\", family = \"Hinnant\", role = \"aut\", comment = \"Author of underlying algorithms for calculating Epoch days to Calendar days and vice versa\" ), person( \"jerichaux\", role = \"aut\", comment = \"Author of included branchless leap year calculation\" ) )", @@ -2405,7 +2461,7 @@ "R (>= 4.2.0)" ], "VignetteBuilder": "litedown", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Config/testthat/load-all": "list(export_all = FALSE, helpers = FALSE)", "NeedsCompilation": "yes", "Author": "Tim Taylor [aut, cre] (ORCID: ), Howard Hinnant [aut] (Author of underlying algorithms for calculating Epoch days to Calendar days and vice versa), jerichaux [aut] (Author of included branchless leap year calculation)", @@ -2491,16 +2547,16 @@ }, "forcats": { "Package": "forcats", - "Version": "1.0.0", + "Version": "1.0.1", "Source": "Repository", "Title": "Tools for Working with Categorical Variables (Factors)", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Helpers for reordering factor levels (including moving specified levels to front, ordering by first appearance, reversing, and randomly shuffling), and tools for modifying factor levels (including collapsing rare levels into other, 'anonymising', and manually 'recoding').", "License": "MIT + file LICENSE", "URL": "https://forcats.tidyverse.org/, https://github.com/tidyverse/forcats", "BugReports": "https://github.com/tidyverse/forcats/issues", "Depends": [ - "R (>= 3.4)" + "R (>= 4.1)" ], "Imports": [ "cli (>= 3.4.0)", @@ -2525,10 +2581,10 @@ "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyData": "true", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre], RStudio [cph, fnd]", - "Maintainer": "Hadley Wickham ", + "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "formatR": { @@ -2630,7 +2686,8 @@ "ByteCompile": "yes", "Collate": "'options.R' 'appender.R' 'constants.R' 'layout.R' 'logger.R' 'scat.R' 'futile.logger-package.R'", "RoxygenNote": "5.0.1", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "futile.options": { "Package": "futile.options", @@ -2648,11 +2705,12 @@ "License": "LGPL-3", "LazyLoad": "yes", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "gargle": { "Package": "gargle", - "Version": "1.5.2", + "Version": "1.6.0", "Source": "Repository", "Title": "Utilities for Working with Google APIs", "Authors@R": "c( person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Craig\", \"Citro\", , \"craigcitro@google.com\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Google Inc\", role = \"cph\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -2669,7 +2727,7 @@ "glue (>= 1.3.0)", "httr (>= 1.4.5)", "jsonlite", - "lifecycle", + "lifecycle (>= 0.2.0)", "openssl", "rappdirs", "rlang (>= 1.1.0)", @@ -2693,9 +2751,9 @@ "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "no", - "Author": "Jennifer Bryan [aut, cre] (), Craig Citro [aut], Hadley Wickham [aut] (), Google Inc [cph], Posit Software, PBC [cph, fnd]", + "Author": "Jennifer Bryan [aut, cre] (ORCID: ), Craig Citro [aut], Hadley Wickham [aut] (ORCID: ), Google Inc [cph], Posit Software, PBC [cph, fnd]", "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, @@ -2733,35 +2791,33 @@ }, "ggplot2": { "Package": "ggplot2", - "Version": "3.5.2", + "Version": "4.0.0", "Source": "Repository", "Title": "Create Elegant Data Visualisations Using the Grammar of Graphics", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Winston\", \"Chang\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Kohske\", \"Takahashi\", role = \"aut\"), person(\"Claus\", \"Wilke\", role = \"aut\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(\"Kara\", \"Woo\", role = \"aut\", comment = c(ORCID = \"0000-0002-5125-4188\")), person(\"Hiroaki\", \"Yutani\", role = \"aut\", comment = c(ORCID = \"0000-0002-3385-7233\")), person(\"Dewey\", \"Dunnington\", role = \"aut\", comment = c(ORCID = \"0000-0002-9415-4582\")), person(\"Teun\", \"van den Brand\", role = \"aut\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Winston\", \"Chang\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Kohske\", \"Takahashi\", role = \"aut\"), person(\"Claus\", \"Wilke\", role = \"aut\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(\"Kara\", \"Woo\", role = \"aut\", comment = c(ORCID = \"0000-0002-5125-4188\")), person(\"Hiroaki\", \"Yutani\", role = \"aut\", comment = c(ORCID = \"0000-0002-3385-7233\")), person(\"Dewey\", \"Dunnington\", role = \"aut\", comment = c(ORCID = \"0000-0002-9415-4582\")), person(\"Teun\", \"van den Brand\", role = \"aut\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A system for 'declaratively' creating graphics, based on \"The Grammar of Graphics\". You provide the data, tell 'ggplot2' how to map variables to aesthetics, what graphical primitives to use, and it takes care of the details.", "License": "MIT + file LICENSE", "URL": "https://ggplot2.tidyverse.org, https://github.com/tidyverse/ggplot2", "BugReports": "https://github.com/tidyverse/ggplot2/issues", "Depends": [ - "R (>= 3.5)" + "R (>= 4.1)" ], "Imports": [ "cli", - "glue", "grDevices", "grid", - "gtable (>= 0.1.1)", + "gtable (>= 0.3.6)", "isoband", "lifecycle (> 1.0.1)", - "MASS", - "mgcv", "rlang (>= 1.1.0)", - "scales (>= 1.3.0)", + "S7", + "scales (>= 1.4.0)", "stats", - "tibble", "vctrs (>= 0.6.0)", "withr (>= 2.5.0)" ], "Suggests": [ + "broom", "covr", "dplyr", "ggplot2movies", @@ -2770,6 +2826,8 @@ "knitr", "mapproj", "maps", + "MASS", + "mgcv", "multcomp", "munsell", "nlme", @@ -2778,10 +2836,12 @@ "ragg (>= 1.2.6)", "RColorBrewer", "rmarkdown", + "roxygen2", "rpart", "sf (>= 0.7-3)", "svglite (>= 2.1.2)", - "testthat (>= 3.1.2)", + "testthat (>= 3.1.5)", + "tibble", "vdiffr (>= 1.0.6)", "xml2" ], @@ -2791,12 +2851,13 @@ "VignetteBuilder": "knitr", "Config/Needs/website": "ggtext, tidyr, forcats, tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-23", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.2", - "Collate": "'ggproto.R' 'ggplot-global.R' 'aaa-.R' 'aes-colour-fill-alpha.R' 'aes-evaluation.R' 'aes-group-order.R' 'aes-linetype-size-shape.R' 'aes-position.R' 'compat-plyr.R' 'utilities.R' 'aes.R' 'utilities-checks.R' 'legend-draw.R' 'geom-.R' 'annotation-custom.R' 'annotation-logticks.R' 'geom-polygon.R' 'geom-map.R' 'annotation-map.R' 'geom-raster.R' 'annotation-raster.R' 'annotation.R' 'autolayer.R' 'autoplot.R' 'axis-secondary.R' 'backports.R' 'bench.R' 'bin.R' 'coord-.R' 'coord-cartesian-.R' 'coord-fixed.R' 'coord-flip.R' 'coord-map.R' 'coord-munch.R' 'coord-polar.R' 'coord-quickmap.R' 'coord-radial.R' 'coord-sf.R' 'coord-transform.R' 'data.R' 'docs_layer.R' 'facet-.R' 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'annotation-logticks.R' 'scale-type.R' 'layer.R' 'make-constructor.R' 'geom-polygon.R' 'geom-map.R' 'annotation-map.R' 'geom-raster.R' 'annotation-raster.R' 'annotation.R' 'autolayer.R' 'autoplot.R' 'axis-secondary.R' 'backports.R' 'bench.R' 'bin.R' 'coord-.R' 'coord-cartesian-.R' 'coord-fixed.R' 'coord-flip.R' 'coord-map.R' 'coord-munch.R' 'coord-polar.R' 'coord-quickmap.R' 'coord-radial.R' 'coord-sf.R' 'coord-transform.R' 'data.R' 'docs_layer.R' 'facet-.R' 'facet-grid-.R' 'facet-null.R' 'facet-wrap.R' 'fortify-map.R' 'fortify-models.R' 'fortify-spatial.R' 'fortify.R' 'stat-.R' 'geom-abline.R' 'geom-rect.R' 'geom-bar.R' 'geom-tile.R' 'geom-bin2d.R' 'geom-blank.R' 'geom-boxplot.R' 'geom-col.R' 'geom-path.R' 'geom-contour.R' 'geom-point.R' 'geom-count.R' 'geom-crossbar.R' 'geom-segment.R' 'geom-curve.R' 'geom-defaults.R' 'geom-ribbon.R' 'geom-density.R' 'geom-density2d.R' 'geom-dotplot.R' 'geom-errorbar.R' 'geom-freqpoly.R' 'geom-function.R' 'geom-hex.R' 'geom-histogram.R' 'geom-hline.R' 'geom-jitter.R' 'geom-label.R' 'geom-linerange.R' 'geom-pointrange.R' 'geom-quantile.R' 'geom-rug.R' 'geom-sf.R' 'geom-smooth.R' 'geom-spoke.R' 'geom-text.R' 'geom-violin.R' 'geom-vline.R' 'ggplot2-package.R' 'grob-absolute.R' 'grob-dotstack.R' 'grob-null.R' 'grouping.R' 'properties.R' 'margins.R' 'theme-elements.R' 'guide-.R' 'guide-axis.R' 'guide-axis-logticks.R' 'guide-axis-stack.R' 'guide-axis-theta.R' 'guide-legend.R' 'guide-bins.R' 'guide-colorbar.R' 'guide-colorsteps.R' 'guide-custom.R' 'guide-none.R' 'guide-old.R' 'guides-.R' 'guides-grid.R' 'hexbin.R' 'import-standalone-obj-type.R' 'import-standalone-types-check.R' 'labeller.R' 'labels.R' 'layer-sf.R' 'layout.R' 'limits.R' 'performance.R' 'plot-build.R' 'plot-construction.R' 'plot-last.R' 'plot.R' 'position-.R' 'position-collide.R' 'position-dodge.R' 'position-dodge2.R' 'position-identity.R' 'position-jitter.R' 'position-jitterdodge.R' 'position-nudge.R' 'position-stack.R' 'quick-plot.R' 'reshape-add-margins.R' 'save.R' 'scale-.R' 'scale-alpha.R' 'scale-binned.R' 'scale-brewer.R' 'scale-colour.R' 'scale-continuous.R' 'scale-date.R' 'scale-discrete-.R' 'scale-expansion.R' 'scale-gradient.R' 'scale-grey.R' 'scale-hue.R' 'scale-identity.R' 'scale-linetype.R' 'scale-linewidth.R' 'scale-manual.R' 'scale-shape.R' 'scale-size.R' 'scale-steps.R' 'scale-view.R' 'scale-viridis.R' 'scales-.R' 'stat-align.R' 'stat-bin.R' 'stat-summary-2d.R' 'stat-bin2d.R' 'stat-bindot.R' 'stat-binhex.R' 'stat-boxplot.R' 'stat-connect.R' 'stat-contour.R' 'stat-count.R' 'stat-density-2d.R' 'stat-density.R' 'stat-ecdf.R' 'stat-ellipse.R' 'stat-function.R' 'stat-identity.R' 'stat-manual.R' 'stat-qq-line.R' 'stat-qq.R' 'stat-quantilemethods.R' 'stat-sf-coordinates.R' 'stat-sf.R' 'stat-smooth-methods.R' 'stat-smooth.R' 'stat-sum.R' 'stat-summary-bin.R' 'stat-summary-hex.R' 'stat-summary.R' 'stat-unique.R' 'stat-ydensity.R' 'summarise-plot.R' 'summary.R' 'theme.R' 'theme-defaults.R' 'theme-current.R' 'theme-sub.R' 'utilities-break.R' 'utilities-grid.R' 'utilities-help.R' 'utilities-patterns.R' 'utilities-resolution.R' 'utilities-tidy-eval.R' 'zxx.R' 'zzz.R'", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut] (), Winston Chang [aut] (), Lionel Henry [aut], Thomas Lin Pedersen [aut, cre] (), Kohske Takahashi [aut], Claus Wilke [aut] (), Kara Woo [aut] (), Hiroaki Yutani [aut] (), Dewey Dunnington [aut] (), Teun van den Brand [aut] (), Posit, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut] (ORCID: ), Winston Chang [aut] (ORCID: ), Lionel Henry [aut], Thomas Lin Pedersen [aut, cre] (ORCID: ), Kohske Takahashi [aut], Claus Wilke [aut] (ORCID: ), Kara Woo [aut] (ORCID: ), Hiroaki Yutani [aut] (ORCID: ), Dewey Dunnington [aut] (ORCID: ), Teun van den Brand [aut] (ORCID: ), Posit, PBC [cph, fnd] (ROR: )", "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, @@ -2843,7 +2904,7 @@ }, "googledrive": { "Package": "googledrive", - "Version": "2.1.1", + "Version": "2.1.2", "Source": "Repository", "Title": "An Interface to Google Drive", "Authors@R": "c( person(\"Lucy\", \"D'Agostino McGowan\", , role = \"aut\"), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -2852,11 +2913,11 @@ "URL": "https://googledrive.tidyverse.org, https://github.com/tidyverse/googledrive", "BugReports": "https://github.com/tidyverse/googledrive/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "cli (>= 3.0.0)", - "gargle (>= 1.5.0)", + "gargle (>= 1.6.0)", "glue (>= 1.4.2)", "httr", "jsonlite", @@ -2875,25 +2936,24 @@ "curl", "dplyr (>= 1.0.0)", "knitr", - "mockr", "rmarkdown", "spelling", - "testthat (>= 3.1.3)" + "testthat (>= 3.1.5)" ], "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse, tidyverse/tidytemplate", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Lucy D'Agostino McGowan [aut], Jennifer Bryan [aut, cre] (), Posit Software, PBC [cph, fnd]", + "Author": "Lucy D'Agostino McGowan [aut], Jennifer Bryan [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd]", "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, "googlesheets4": { "Package": "googlesheets4", - "Version": "1.1.1", + "Version": "1.1.2", "Source": "Repository", "Title": "Access Google Sheets using the Sheets API V4", "Authors@R": "c( person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -2908,7 +2968,7 @@ "cellranger", "cli (>= 3.0.0)", "curl", - "gargle (>= 1.5.0)", + "gargle (>= 1.6.0)", "glue (>= 1.3.0)", "googledrive (>= 2.1.0)", "httr", @@ -2935,20 +2995,21 @@ "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "no", - "Author": "Jennifer Bryan [cre, aut] (), Posit Software, PBC [cph, fnd]", + "Author": "Jennifer Bryan [cre, aut] (ORCID: ), Posit Software, PBC [cph, fnd]", "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, "grates": { "Package": "grates", - "Version": "1.5.0", + "Version": "1.6.0", "Source": "Repository", "Title": "Grouped Date Classes", "Authors@R": "c( person( given = \"Tim\", family = \"Taylor\", role = c(\"aut\", \"cre\"), email = \"tim.taylor@hiddenelephants.co.uk\", comment = c(ORCID = \"0000-0002-8587-7113\") ) )", "Description": "Provides a coherent interface and implementation for creating grouped date classes.", "URL": "https://www.reconverse.org/grates/, https://github.com/reconverse/grates", + "BugReports": "https://github.com/reconverse/grates/issues", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", @@ -2974,7 +3035,7 @@ "fastymd" ], "NeedsCompilation": "no", - "Author": "Tim Taylor [aut, cre] ()", + "Author": "Tim Taylor [aut, cre] (ORCID: )", "Maintainer": "Tim Taylor ", "Repository": "CRAN" }, @@ -3006,7 +3067,8 @@ "NeedsCompilation": "no", "Author": "Baptiste Auguie [aut, cre], Anton Antonov [ctb]", "Maintainer": "Baptiste Auguie ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "gtable": { "Package": "gtable", @@ -3303,7 +3365,8 @@ "NeedsCompilation": "no", "Author": "Rich FitzJohn [aut, cre]", "Maintainer": "Rich FitzJohn ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "igraph": { "Package": "igraph", @@ -3443,7 +3506,8 @@ "NeedsCompilation": "no", "Author": "Oleg Sklyar [aut], Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), Mike Smith [ctb], Duncan Murdoch [ctb], Karline Soetaert [ctb] (), Johannes Ranke [ctb] ()", "Maintainer": "Dirk Eddelbuettel ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "isoband": { "Package": "isoband", @@ -3660,7 +3724,8 @@ "stats", "graphics" ], - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "lambda.r": { "Package": "lambda.r", @@ -3684,7 +3749,8 @@ "License": "LGPL-3", "LazyLoad": "yes", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "lattice": { "Package": "lattice", @@ -3723,7 +3789,8 @@ "NeedsCompilation": "yes", "Author": "Deepayan Sarkar [aut, cre] (), Felix Andrews [ctb], Kevin Wright [ctb] (documentation), Neil Klepeis [ctb], Johan Larsson [ctb] (miscellaneous improvements), Zhijian (Jason) Wen [cph] (filled contour code), Paul Murrell [ctb], Stefan Eng [ctb] (violin plot improvements), Achim Zeileis [ctb] (modern colors), Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and lsegments)", "Maintainer": "Deepayan Sarkar ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "lazyeval": { "Package": "lazyeval", @@ -3748,7 +3815,8 @@ "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut, cre], RStudio [cph]", "Maintainer": "Hadley Wickham ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "lifecycle": { "Package": "lifecycle", @@ -3989,11 +4057,11 @@ }, "magrittr": { "Package": "magrittr", - "Version": "2.0.3", + "Version": "2.0.4", "Source": "Repository", "Type": "Package", "Title": "A Forward-Pipe Operator for R", - "Authors@R": "c( person(\"Stefan Milton\", \"Bache\", , \"stefan@stefanbache.dk\", role = c(\"aut\", \"cph\"), comment = \"Original author and creator of magrittr\"), person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@rstudio.com\", role = \"cre\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Stefan Milton\", \"Bache\", , \"stefan@stefanbache.dk\", role = c(\"aut\", \"cph\"), comment = \"Original author and creator of magrittr\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"cre\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Provides a mechanism for chaining commands with a new forward-pipe operator, %>%. This operator will forward a value, or the result of an expression, into the next function call/expression. There is flexible support for the type of right-hand side expressions. For more information, see package vignette. To quote Rene Magritte, \"Ceci n'est pas un pipe.\"", "License": "MIT + file LICENSE", "URL": "https://magrittr.tidyverse.org, https://github.com/tidyverse/magrittr", @@ -4012,10 +4080,10 @@ "ByteCompile": "Yes", "Config/Needs/website": "tidyverse/tidytemplate", "Encoding": "UTF-8", - "RoxygenNote": "7.1.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Stefan Milton Bache [aut, cph] (Original author and creator of magrittr), Hadley Wickham [aut], Lionel Henry [cre], RStudio [cph, fnd]", - "Maintainer": "Lionel Henry ", + "Author": "Stefan Milton Bache [aut, cph] (Original author and creator of magrittr), Hadley Wickham [aut], Lionel Henry [cre], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, "matchmaker": { @@ -4077,7 +4145,8 @@ "URL": "https://github.com/HenrikBengtsson/matrixStats", "BugReports": "https://github.com/HenrikBengtsson/matrixStats/issues", "RoxygenNote": "7.3.2", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "memoise": { "Package": "memoise", @@ -4109,39 +4178,6 @@ "Maintainer": "Winston Chang ", "Repository": "CRAN" }, - "mgcv": { - "Package": "mgcv", - "Version": "1.9-3", - "Source": "Repository", - "Authors@R": "person(given = \"Simon\", family = \"Wood\", role = c(\"aut\", \"cre\"), email = \"simon.wood@r-project.org\")", - "Title": "Mixed GAM Computation Vehicle with Automatic Smoothness Estimation", - "Description": "Generalized additive (mixed) models, some of their extensions and other generalized ridge regression with multiple smoothing parameter estimation by (Restricted) Marginal Likelihood, Generalized Cross Validation and similar, or using iterated nested Laplace approximation for fully Bayesian inference. See Wood (2017) for an overview. Includes a gam() function, a wide variety of smoothers, 'JAGS' support and distributions beyond the exponential family.", - "Priority": "recommended", - "Depends": [ - "R (>= 3.6.0)", - "nlme (>= 3.1-64)" - ], - "Imports": [ - "methods", - "stats", - "graphics", - "Matrix", - "splines", - "utils" - ], - "Suggests": [ - "parallel", - "survival", - "MASS" - ], - "LazyLoad": "yes", - "ByteCompile": "yes", - "License": "GPL (>= 2)", - "NeedsCompilation": "yes", - "Author": "Simon Wood [aut, cre]", - "Maintainer": "Simon Wood ", - "Repository": "CRAN" - }, "mime": { "Package": "mime", "Version": "0.13", @@ -4182,8 +4218,9 @@ ], "SystemRequirements": "GNU make", "NeedsCompilation": "yes", - "Repository": "CRAN", - "Author": "Douglas Bates [aut], Katharine M. Mullen [aut, cre], John C. Nash [aut], Ravi Varadhan [aut]" + "Repository": "RSPM", + "Author": "Douglas Bates [aut], Katharine M. Mullen [aut, cre], John C. Nash [aut], Ravi Varadhan [aut]", + "Encoding": "UTF-8" }, "modelr": { "Package": "modelr", @@ -4302,7 +4339,8 @@ "Maintainer": "Paul Gilbert ", "URL": "http://optimizer.r-forge.r-project.org/", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "numberize": { "Package": "numberize", @@ -4412,7 +4450,7 @@ }, "openssl": { "Package": "openssl", - "Version": "2.3.3", + "Version": "2.3.4", "Source": "Repository", "Type": "Package", "Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL", @@ -4502,7 +4540,7 @@ }, "patchwork": { "Package": "patchwork", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Type": "Package", "Title": "The Composer of Plots", @@ -4546,7 +4584,7 @@ }, "pillar": { "Package": "pillar", - "Version": "1.10.2", + "Version": "1.11.1", "Source": "Repository", "Title": "Coloured Formatting for Columns", "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\"), person(given = \"RStudio\", role = \"cph\"))", @@ -4588,7 +4626,7 @@ ], "VignetteBuilder": "knitr", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2.9000", + "RoxygenNote": "7.3.3.9000", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/testthat/start-first": "format_multi_fuzz, format_multi_fuzz_2, format_multi, ctl_colonnade, ctl_colonnade_1, ctl_colonnade_2", @@ -4597,7 +4635,7 @@ "Config/gha/extra-packages": "units=?ignore-before-r=4.3.0", "Config/Needs/website": "tidyverse/tidytemplate", "NeedsCompilation": "no", - "Author": "Kirill Müller [aut, cre] (), Hadley Wickham [aut], RStudio [cph]", + "Author": "Kirill Müller [aut, cre] (ORCID: ), Hadley Wickham [aut], RStudio [cph]", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, @@ -4666,12 +4704,12 @@ }, "pkgload": { "Package": "pkgload", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Title": "Simulate Package Installation and Attach", "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Core team\", role = \"ctb\", comment = \"Some namespace and vignette code extracted from base R\") )", "Description": "Simulates the process of installing a package and then attaching it. This is a key part of the 'devtools' package as it allows you to rapidly iterate while developing a package.", - "License": "GPL-3", + "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/pkgload, https://pkgload.r-lib.org", "BugReports": "https://github.com/r-lib/pkgload/issues", "Depends": [ @@ -4688,8 +4726,7 @@ "processx", "rlang (>= 1.1.1)", "rprojroot", - "utils", - "withr (>= 2.4.3)" + "utils" ], "Suggests": [ "bitops", @@ -4700,14 +4737,15 @@ "remotes", "rstudioapi", "testthat (>= 3.2.1.1)", - "usethis" + "usethis", + "withr" ], "Config/Needs/website": "tidyverse/tidytemplate, ggplot2", "Config/testthat/edition": "3", "Config/testthat/parallel": "TRUE", "Config/testthat/start-first": "dll", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.2", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut], Winston Chang [aut], Jim Hester [aut], Lionel Henry [aut, cre], Posit Software, PBC [cph, fnd], R Core team [ctb] (Some namespace and vignette code extracted from base R)", "Maintainer": "Lionel Henry ", @@ -4816,7 +4854,8 @@ ], "Collate": "'adjective.R' 'adverb.R' 'exclamation.R' 'verb.R' 'rpackage.R' 'package.R'", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "prettyunits": { "Package": "prettyunits", @@ -4957,16 +4996,16 @@ }, "purrr": { "Package": "purrr", - "Version": "1.0.4", + "Version": "1.1.0", "Source": "Repository", "Title": "Functional Programming Tools", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"https://ror.org/03wc8by49\")) )", "Description": "A complete and consistent functional programming toolkit for R.", "License": "MIT + file LICENSE", "URL": "https://purrr.tidyverse.org/, https://github.com/tidyverse/purrr", "BugReports": "https://github.com/tidyverse/purrr/issues", "Depends": [ - "R (>= 4.0)" + "R (>= 4.1)" ], "Imports": [ "cli (>= 3.6.1)", @@ -4976,11 +5015,13 @@ "vctrs (>= 0.6.3)" ], "Suggests": [ + "carrier (>= 0.2.0)", "covr", "dplyr (>= 0.7.8)", "httr", "knitr", "lubridate", + "mirai (>= 2.4.0)", "rmarkdown", "testthat (>= 3.0.0)", "tibble", @@ -4998,17 +5039,17 @@ "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut, cre] (), Lionel Henry [aut], Posit Software, PBC [cph, fnd] (03wc8by49)", + "Author": "Hadley Wickham [aut, cre] (ORCID: ), Lionel Henry [aut], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "ragg": { "Package": "ragg", - "Version": "1.4.0", + "Version": "1.5.0", "Source": "Repository", "Type": "Package", "Title": "Graphic Devices Based on AGG", - "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Maxim\", \"Shemanarev\", role = c(\"aut\", \"cph\"), comment = \"Author of AGG\"), person(\"Tony\", \"Juricic\", , \"tonygeek@yahoo.com\", role = c(\"ctb\", \"cph\"), comment = \"Contributor to AGG\"), person(\"Milan\", \"Marusinec\", , \"milan@marusinec.sk\", role = c(\"ctb\", \"cph\"), comment = \"Contributor to AGG\"), person(\"Spencer\", \"Garrett\", role = \"ctb\", comment = \"Contributor to AGG\"), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Maxim\", \"Shemanarev\", role = c(\"aut\", \"cph\"), comment = \"Author of AGG\"), person(\"Tony\", \"Juricic\", , \"tonygeek@yahoo.com\", role = c(\"ctb\", \"cph\"), comment = \"Contributor to AGG\"), person(\"Milan\", \"Marusinec\", , \"milan@marusinec.sk\", role = c(\"ctb\", \"cph\"), comment = \"Contributor to AGG\"), person(\"Spencer\", \"Garrett\", role = \"ctb\", comment = \"Contributor to AGG\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Maintainer": "Thomas Lin Pedersen ", "Description": "Anti-Grain Geometry (AGG) is a high-quality and high-performance 2D drawing library. The 'ragg' package provides a set of graphic devices based on AGG to use as alternative to the raster devices provided through the 'grDevices' package.", "License": "MIT + file LICENSE", @@ -5028,14 +5069,15 @@ "systemfonts", "textshaping" ], + "Config/build/compilation-database": "true", "Config/Needs/website": "ggplot2, devoid, magick, bench, tidyr, ggridges, hexbin, sessioninfo, pkgdown, tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", - "SystemRequirements": "freetype2, libpng, libtiff, libjpeg", - "Config/testthat/edition": "3", - "Config/build/compilation-database": "true", + "SystemRequirements": "freetype2, libpng, libtiff, libjpeg, libwebp, libwebpmux", "NeedsCompilation": "yes", - "Author": "Thomas Lin Pedersen [cre, aut] (), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit, PBC [cph, fnd]", + "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: ), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit Software, PBC [cph, fnd] (ROR: )", "Repository": "CRAN" }, "randomNames": { @@ -5069,7 +5111,8 @@ "License": "GPL-3", "NeedsCompilation": "no", "Author": "Damian W. Betebenner [aut, cre], Lambert Joshua [ctb]", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "rappdirs": { "Package": "rappdirs", @@ -5529,7 +5572,7 @@ }, "rmarkdown": { "Package": "rmarkdown", - "Version": "2.29", + "Version": "2.30", "Source": "Repository", "Type": "Package", "Title": "Dynamic Documents for R", @@ -5579,13 +5622,13 @@ "RoxygenNote": "7.3.2", "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org", "NeedsCompilation": "no", - "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (), Christophe Dervieux [aut] (), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (), Andrew Dunning [ctb] (), Atsushi Yasumoto [ctb, cph] (, Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (), Devon Ryan [ctb] (), Frederik Aust [ctb] (), Jeff Allen [ctb], JooYoung Seo [ctb] (), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)", + "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (ORCID: ), Christophe Dervieux [aut] (ORCID: ), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (ORCID: ), Andrew Dunning [ctb] (ORCID: ), Atsushi Yasumoto [ctb, cph] (ORCID: , cph: Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (ORCID: ), Devon Ryan [ctb] (ORCID: ), Frederik Aust [ctb] (ORCID: ), Jeff Allen [ctb], JooYoung Seo [ctb] (ORCID: ), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, "rprojroot": { "Package": "rprojroot", - "Version": "2.0.4", + "Version": "2.1.1", "Source": "Repository", "Title": "Finding Files in Project Subdirectories", "Authors@R": "person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\"))", @@ -5600,18 +5643,20 @@ "covr", "knitr", "lifecycle", - "mockr", "rlang", "rmarkdown", - "testthat (>= 3.0.0)", + "testthat (>= 3.2.0)", "withr" ], "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.2.9000", + "Config/autostyle/scope": "line_breaks", + "Config/autostyle/strict": "true", + "Config/Needs/website": "tidyverse/tidytemplate", "NeedsCompilation": "no", - "Author": "Kirill Müller [aut, cre] ()", + "Author": "Kirill Müller [aut, cre] (ORCID: )", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, @@ -5675,11 +5720,11 @@ }, "rstantools": { "Package": "rstantools", - "Version": "2.4.0", + "Version": "2.5.0", "Source": "Repository", "Type": "Package", "Title": "Tools for Developing R Packages Interfacing with 'Stan'", - "Date": "2024-01-22", + "Date": "2025-08-31", "Authors@R": "c(person(given = \"Jonah\", family = \"Gabry\", role = c(\"aut\", \"cre\"), email = \"jsg2201@columbia.edu\"), person(given = \"Ben\", family = \"Goodrich\", role = \"aut\", email = \"benjamin.goodrich@columbia.edu\"), person(given = \"Martin\", family = \"Lysy\", role = \"aut\", email = \"mlysy@uwaterloo.ca\"), person(given = \"Andrew\", family = \"Johnson\", role = \"aut\"), person(given = \"Hamada S.\", family = \"Badr\", role = \"ctb\"), person(given = \"Marco\", family = \"Colombo\", role = \"ctb\"), person(given = \"Stefan\", family = \"Siegert\", role = \"ctb\"), person(given = \"Trustees of\", family = \"Columbia University\", role = \"cph\"))", "Description": "Provides various tools for developers of R packages interfacing with 'Stan' , including functions to set up the required package structure, S3 generics and default methods to unify function naming across 'Stan'-based R packages, and vignettes with recommendations for developers.", "License": "GPL (>= 3)", @@ -5705,7 +5750,7 @@ "rmarkdown", "rstudioapi" ], - "RoxygenNote": "7.3.0", + "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Author": "Jonah Gabry [aut, cre], Ben Goodrich [aut], Martin Lysy [aut], Andrew Johnson [aut], Hamada S. Badr [ctb], Marco Colombo [ctb], Stefan Siegert [ctb], Trustees of Columbia University [cph]", @@ -5774,16 +5819,16 @@ }, "rvest": { "Package": "rvest", - "Version": "1.0.4", + "Version": "1.0.5", "Source": "Repository", "Title": "Easily Harvest (Scrape) Web Pages", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Wrappers around the 'xml2' and 'httr' packages to make it easy to download, then manipulate, HTML and XML.", "License": "MIT + file LICENSE", "URL": "https://rvest.tidyverse.org/, https://github.com/tidyverse/rvest", "BugReports": "https://github.com/tidyverse/rvest/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "cli", @@ -5794,12 +5839,13 @@ "rlang (>= 1.1.0)", "selectr", "tibble", - "xml2 (>= 1.3)" + "xml2 (>= 1.4.0)" ], "Suggests": [ "chromote", "covr", "knitr", + "purrr", "R6", "readr", "repurrrsive", @@ -5807,6 +5853,7 @@ "spelling", "stringi (>= 0.3.1)", "testthat (>= 3.0.2)", + "tidyr", "webfakes" ], "VignetteBuilder": "knitr", @@ -5815,9 +5862,9 @@ "Config/testthat/parallel": "true", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.2", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, @@ -5929,25 +5976,27 @@ "NeedsCompilation": "no", "Author": "Simon Potter [aut, trl, cre], Simon Sapin [aut], Ian Bicking [aut]", "Maintainer": "Simon Potter ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "simulist": { "Package": "simulist", - "Version": "0.5.0", + "Version": "0.6.0", "Source": "Repository", "Title": "Simulate Disease Outbreak Line List and Contacts Data", - "Authors@R": "c( person(\"Joshua W.\", \"Lambert\", , \"joshua.lambert@lshtm.ac.uk\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-5218-3046\")), person(\"Carmen\", \"Tamayo\", , \"carmen.tamayo-cuartero@lshtm.ac.uk\", role = \"aut\", comment = c(ORCID = \"0000-0003-4184-2864\")), person(\"Hugo\", \"Gruson\", , \"hugo@data.org\", role = c(\"ctb\", \"rev\"), comment = c(ORCID = \"0000-0002-4094-1476\")), person(\"Pratik R.\", \"Gupte\", , \"pratik.gupte@lshtm.ac.uk\", role = c(\"ctb\", \"rev\"), comment = c(ORCID = \"0000-0001-5294-7819\")), person(\"Adam\", \"Kucharski\", , \"adam.kucharski@lshtm.ac.uk\", role = \"rev\", comment = c(ORCID = \"0000-0001-8814-9421\")), person(\"Chris\", \"Hartgerink\", , \"chris@data.org\", role = \"rev\", comment = c(ORCID = \"0000-0003-1050-6809\")), person(\"Sebastian\", \"Funk\", , \"sebastian.funk@lshtm.ac.uk\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2842-3406\")), person(\"London School of Hygiene and Tropical Medicine, LSHTM\", role = \"cph\", comment = c(ROR = \"00a0jsq62\")) )", + "Authors@R": "c( person(\"Joshua W.\", \"Lambert\", , \"joshua.lambert@lshtm.ac.uk\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-5218-3046\")), person(\"Carmen\", \"Tamayo Cuartero\", , \"carmen.tamayo-cuartero@lshtm.ac.uk\", role = \"aut\", comment = c(ORCID = \"0000-0003-4184-2864\")), person(\"Hugo\", \"Gruson\", , \"hugo@data.org\", role = c(\"ctb\", \"rev\"), comment = c(ORCID = \"0000-0002-4094-1476\")), person(\"Pratik R.\", \"Gupte\", , \"pratik.gupte@lshtm.ac.uk\", role = c(\"ctb\", \"rev\"), comment = c(ORCID = \"0000-0001-5294-7819\")), person(\"Adam\", \"Kucharski\", , \"adam.kucharski@lshtm.ac.uk\", role = \"rev\", comment = c(ORCID = \"0000-0001-8814-9421\")), person(\"Chris\", \"Hartgerink\", , \"chris@data.org\", role = \"rev\", comment = c(ORCID = \"0000-0003-1050-6809\")), person(\"Sebastian\", \"Funk\", , \"sebastian.funk@lshtm.ac.uk\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2842-3406\")), person(\"London School of Hygiene and Tropical Medicine, LSHTM\", role = \"cph\", comment = c(ROR = \"00a0jsq62\")) )", "Description": "Tools to simulate realistic raw case data for an epidemic in the form of line lists and contacts using a branching process. Simulated outbreaks are parameterised with epidemiological parameters and can have age-structured populations, age-stratified hospitalisation and death risk and time-varying case fatality risk.", "License": "MIT + file LICENSE", "URL": "https://github.com/epiverse-trace/simulist, https://epiverse-trace.github.io/simulist/", "BugReports": "https://github.com/epiverse-trace/simulist/issues", "Depends": [ - "R (>= 4.1.0)" + "R (>= 4.2.0)" ], "Imports": [ "checkmate", "english", "epiparameter (>= 0.4.0)", + "grates", "randomNames", "rlang", "stats" @@ -5956,7 +6005,7 @@ "dplyr", "epicontacts (>= 1.1.3)", "ggplot2", - "incidence2 (>= 2.3.0)", + "incidence2 (>= 2.6.2)", "knitr", "rmarkdown", "spelling", @@ -5970,7 +6019,7 @@ "Language": "en-GB", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", - "Author": "Joshua W. Lambert [aut, cre, cph] (), Carmen Tamayo [aut] (), Hugo Gruson [ctb, rev] (), Pratik R. Gupte [ctb, rev] (), Adam Kucharski [rev] (), Chris Hartgerink [rev] (), Sebastian Funk [ctb] (), London School of Hygiene and Tropical Medicine, LSHTM [cph] (00a0jsq62)", + "Author": "Joshua W. Lambert [aut, cre, cph] (ORCID: ), Carmen Tamayo Cuartero [aut] (ORCID: ), Hugo Gruson [ctb, rev] (ORCID: ), Pratik R. Gupte [ctb, rev] (ORCID: ), Adam Kucharski [rev] (ORCID: ), Chris Hartgerink [rev] (ORCID: ), Sebastian Funk [ctb] (ORCID: ), London School of Hygiene and Tropical Medicine, LSHTM [cph] (ROR: )", "Maintainer": "Joshua W. Lambert ", "Repository": "CRAN" }, @@ -6134,7 +6183,7 @@ }, "stringr": { "Package": "stringr", - "Version": "1.5.1", + "Version": "1.5.2", "Source": "Repository", "Title": "Simple, Consistent Wrappers for Common String Operations", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -6170,7 +6219,7 @@ "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyData": "true", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.2", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut, cre, cph], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", @@ -6271,7 +6320,7 @@ }, "systemfonts": { "Package": "systemfonts", - "Version": "1.2.3", + "Version": "1.3.1", "Source": "Repository", "Type": "Package", "Title": "System Native Font Finding", @@ -6294,9 +6343,12 @@ "Suggests": [ "covr", "farver", + "ggplot2", "graphics", "knitr", + "ragg", "rmarkdown", + "svglite", "testthat (>= 2.1.0)" ], "LinkingTo": [ @@ -6330,7 +6382,8 @@ "License": "GPL (>= 2)", "URL": "http://www.stat.boogaart.de/tensorA/", "NeedsCompilation": "yes", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "testthat": { "Package": "testthat", @@ -6393,7 +6446,7 @@ }, "textshaping": { "Package": "textshaping", - "Version": "1.0.1", + "Version": "1.0.3", "Source": "Repository", "Title": "Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text Shaping", "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", @@ -6774,7 +6827,8 @@ "License": "GPL-3", "NeedsCompilation": "no", "Author": "Damian W. Betebenner [aut, cre], Andrew Martin [ctb], Jeff Erickson [ctb]", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "truncnorm": { "Package": "truncnorm", @@ -6875,7 +6929,8 @@ "URL": "https://www.rforge.net/uuid", "BugReports": "https://github.com/s-u/uuid/issues", "NeedsCompilation": "yes", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "vctrs": { "Package": "vctrs", @@ -6954,7 +7009,7 @@ }, "visNetwork": { "Package": "visNetwork", - "Version": "2.1.2", + "Version": "2.1.4", "Source": "Repository", "Title": "Network Visualization using 'vis.js' Library", "Authors@R": "c( person(family = \"Almende B.V. and Contributors\", role = c(\"aut\", \"cph\"), comment = \"vis.js library in htmlwidgets/lib, https://visjs.org/, https://github.com/visjs/vis-network\"), person(\"Benoit\", \"Thieurmel\", role = c(\"aut\", \"cre\"), comment = \"R interface\", email = \"bthieurmel@gmail.com\") )", @@ -6976,6 +7031,7 @@ "stats" ], "License": "MIT + file LICENSE", + "Encoding": "UTF-8", "Suggests": [ "knitr", "rmarkdown", @@ -6991,7 +7047,7 @@ "flashClust" ], "VignetteBuilder": "knitr, rmarkdown", - "RoxygenNote": "7.1.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Almende B.V. and Contributors [aut, cph] (vis.js library in htmlwidgets/lib, https://visjs.org/, https://github.com/visjs/vis-network), Benoit Thieurmel [aut, cre] (R interface)", "Repository": "CRAN" @@ -7046,7 +7102,7 @@ }, "vroom": { "Package": "vroom", - "Version": "1.6.5", + "Version": "1.6.6", "Source": "Repository", "Title": "Read and Write Rectangular Text Data Quickly", "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -7098,7 +7154,7 @@ ], "LinkingTo": [ "cpp11 (>= 0.2.0)", - "progress (>= 1.2.1)", + "progress (>= 1.2.3)", "tzdb (>= 0.1.1)" ], "VignetteBuilder": "knitr", @@ -7108,15 +7164,15 @@ "Copyright": "file COPYRIGHTS", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.2.3.9000", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Jim Hester [aut] (), Hadley Wickham [aut] (), Jennifer Bryan [aut, cre] (), Shelby Bearrows [ctb], https://github.com/mandreyel/ [cph] (mio library), Jukka Jylänki [cph] (grisu3 implementation), Mikkel Jørgensen [cph] (grisu3 implementation), Posit Software, PBC [cph, fnd]", + "Author": "Jim Hester [aut] (ORCID: ), Hadley Wickham [aut] (ORCID: ), Jennifer Bryan [aut, cre] (ORCID: ), Shelby Bearrows [ctb], https://github.com/mandreyel/ [cph] (mio library), Jukka Jylänki [cph] (grisu3 implementation), Mikkel Jørgensen [cph] (grisu3 implementation), Posit Software, PBC [cph, fnd]", "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, "waldo": { "Package": "waldo", - "Version": "0.6.1", + "Version": "0.6.2", "Source": "Repository", "Title": "Find Differences Between R Objects", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -7207,11 +7263,12 @@ "License": "GPL (>= 2)", "URL": "http://population.un.org/wpp", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "xfun": { "Package": "xfun", - "Version": "0.52", + "Version": "0.53", "Source": "Repository", "Type": "Package", "Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'", @@ -7233,7 +7290,7 @@ "rstudioapi", "tinytex (>= 0.30)", "mime", - "litedown (>= 0.4)", + "litedown (>= 0.6)", "commonmark", "knitr (>= 1.50)", "remotes", @@ -7243,6 +7300,7 @@ "jsonlite", "magick", "yaml", + "data.table", "qs" ], "License": "MIT + file LICENSE", @@ -7252,13 +7310,13 @@ "RoxygenNote": "7.3.2", "VignetteBuilder": "litedown", "NeedsCompilation": "yes", - "Author": "Yihui Xie [aut, cre, cph] (, https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (), Christophe Dervieux [ctb]", + "Author": "Yihui Xie [aut, cre, cph] (ORCID: , URL: https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (ORCID: ), Christophe Dervieux [ctb]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, "xml2": { "Package": "xml2", - "Version": "1.3.8", + "Version": "1.4.0", "Source": "Repository", "Title": "Parse XML", "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", email = \"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Foundation\", role = \"ctb\", comment = \"Copy of R-project homepage cached as example\") )", @@ -7288,7 +7346,7 @@ "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.2", "SystemRequirements": "libxml2: libxml2-dev (deb), libxml2-devel (rpm)", "Collate": "'S4.R' 'as_list.R' 'xml_parse.R' 'as_xml_document.R' 'classes.R' 'format.R' 'import-standalone-obj-type.R' 'import-standalone-purrr.R' 'import-standalone-types-check.R' 'init.R' 'nodeset_apply.R' 'paths.R' 'utils.R' 'xml2-package.R' 'xml_attr.R' 'xml_children.R' 'xml_document.R' 'xml_find.R' 'xml_missing.R' 'xml_modify.R' 'xml_name.R' 'xml_namespaces.R' 'xml_node.R' 'xml_nodeset.R' 'xml_path.R' 'xml_schema.R' 'xml_serialize.R' 'xml_structure.R' 'xml_text.R' 'xml_type.R' 'xml_url.R' 'xml_write.R' 'zzz.R'", "Config/testthat/edition": "3", @@ -7314,7 +7372,8 @@ "URL": "https://github.com/vubiostat/r-yaml/", "BugReports": "https://github.com/vubiostat/r-yaml/issues", "NeedsCompilation": "yes", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "ympes": { "Package": "ympes",