diff --git a/packages/flutter_tools/lib/src/android/native_assets.dart b/packages/flutter_tools/lib/src/android/native_assets.dart
index 8ab843da810..91fbc6f89b4 100644
--- a/packages/flutter_tools/lib/src/android/native_assets.dart
+++ b/packages/flutter_tools/lib/src/android/native_assets.dart
@@ -4,8 +4,10 @@
 
 import 'package:native_assets_builder/native_assets_builder.dart'
     show BuildResult, DryRunResult;
-import 'package:native_assets_cli/native_assets_cli.dart' hide BuildMode;
-import 'package:native_assets_cli/native_assets_cli.dart' as native_assets_cli;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    hide BuildMode;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    as native_assets_cli;
 
 import '../base/common.dart';
 import '../base/file_system.dart';
diff --git a/packages/flutter_tools/lib/src/build_system/targets/native_assets.dart b/packages/flutter_tools/lib/src/build_system/targets/native_assets.dart
index 8757e72123a..b2f18511578 100644
--- a/packages/flutter_tools/lib/src/build_system/targets/native_assets.dart
+++ b/packages/flutter_tools/lib/src/build_system/targets/native_assets.dart
@@ -3,7 +3,7 @@
 // found in the LICENSE file.
 
 import 'package:meta/meta.dart';
-import 'package:native_assets_cli/native_assets_cli.dart' show Asset;
+import 'package:native_assets_cli/native_assets_cli_internal.dart' show Asset;
 import 'package:package_config/package_config_types.dart';
 
 import '../../android/gradle_utils.dart';
diff --git a/packages/flutter_tools/lib/src/ios/native_assets.dart b/packages/flutter_tools/lib/src/ios/native_assets.dart
index 7b9c84a290a..5327ca7280e 100644
--- a/packages/flutter_tools/lib/src/ios/native_assets.dart
+++ b/packages/flutter_tools/lib/src/ios/native_assets.dart
@@ -4,8 +4,10 @@
 
 import 'package:native_assets_builder/native_assets_builder.dart'
     show BuildResult, DryRunResult;
-import 'package:native_assets_cli/native_assets_cli.dart' hide BuildMode;
-import 'package:native_assets_cli/native_assets_cli.dart' as native_assets_cli;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    hide BuildMode;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    as native_assets_cli;
 
 import '../base/file_system.dart';
 import '../build_info.dart';
diff --git a/packages/flutter_tools/lib/src/linux/native_assets.dart b/packages/flutter_tools/lib/src/linux/native_assets.dart
index 692c4126ac8..7b8bb0fc480 100644
--- a/packages/flutter_tools/lib/src/linux/native_assets.dart
+++ b/packages/flutter_tools/lib/src/linux/native_assets.dart
@@ -2,7 +2,8 @@
 // Use of this source code is governed by a BSD-style license that can be
 // found in the LICENSE file.
 
-import 'package:native_assets_cli/native_assets_cli.dart' hide BuildMode;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    hide BuildMode;
 
 import '../base/common.dart';
 import '../base/file_system.dart';
diff --git a/packages/flutter_tools/lib/src/macos/native_assets.dart b/packages/flutter_tools/lib/src/macos/native_assets.dart
index 30eed141404..eb609c04ee4 100644
--- a/packages/flutter_tools/lib/src/macos/native_assets.dart
+++ b/packages/flutter_tools/lib/src/macos/native_assets.dart
@@ -4,8 +4,10 @@
 
 import 'package:native_assets_builder/native_assets_builder.dart'
     show BuildResult, DryRunResult;
-import 'package:native_assets_cli/native_assets_cli.dart' hide BuildMode;
-import 'package:native_assets_cli/native_assets_cli.dart' as native_assets_cli;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    hide BuildMode;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    as native_assets_cli;
 
 import '../base/file_system.dart';
 import '../build_info.dart';
diff --git a/packages/flutter_tools/lib/src/macos/native_assets_host.dart b/packages/flutter_tools/lib/src/macos/native_assets_host.dart
index ce370991a57..e86ea7e4748 100644
--- a/packages/flutter_tools/lib/src/macos/native_assets_host.dart
+++ b/packages/flutter_tools/lib/src/macos/native_assets_host.dart
@@ -4,7 +4,8 @@
 
 // Shared logic between iOS and macOS implementations of native assets.
 
-import 'package:native_assets_cli/native_assets_cli.dart' hide BuildMode;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    hide BuildMode;
 
 import '../base/common.dart';
 import '../base/file_system.dart';
diff --git a/packages/flutter_tools/lib/src/native_assets.dart b/packages/flutter_tools/lib/src/native_assets.dart
index 97ad5415b17..61d550494b7 100644
--- a/packages/flutter_tools/lib/src/native_assets.dart
+++ b/packages/flutter_tools/lib/src/native_assets.dart
@@ -7,7 +7,7 @@
 import 'package:logging/logging.dart' as logging;
 import 'package:native_assets_builder/native_assets_builder.dart' hide NativeAssetsBuildRunner;
 import 'package:native_assets_builder/native_assets_builder.dart' as native_assets_builder show NativeAssetsBuildRunner;
-import 'package:native_assets_cli/native_assets_cli.dart';
+import 'package:native_assets_cli/native_assets_cli_internal.dart';
 import 'package:package_config/package_config_types.dart';
 
 import 'android/native_assets.dart';
diff --git a/packages/flutter_tools/lib/src/update_packages_pins.dart b/packages/flutter_tools/lib/src/update_packages_pins.dart
index 5cbad7cc4b7..24a74f19f29 100644
--- a/packages/flutter_tools/lib/src/update_packages_pins.dart
+++ b/packages/flutter_tools/lib/src/update_packages_pins.dart
@@ -28,6 +28,4 @@ const Map<String, String> kManuallyPinnedDependencies = <String, String>{
   'test_api': '0.6.1', // https://github.com/flutter/flutter/issues/140169
   'test_core': '0.5.9', // https://github.com/flutter/flutter/issues/140169
   'test': '1.24.9', // https://github.com/flutter/flutter/issues/140169
-  'native_assets_builder': '0.3.0', // https://github.com/flutter/flutter/pull/141814
-  'native_assets_cli': '0.3.2', // https://github.com/flutter/flutter/pull/141814
 };
diff --git a/packages/flutter_tools/lib/src/windows/native_assets.dart b/packages/flutter_tools/lib/src/windows/native_assets.dart
index c5f5835d008..2196b3f3b2d 100644
--- a/packages/flutter_tools/lib/src/windows/native_assets.dart
+++ b/packages/flutter_tools/lib/src/windows/native_assets.dart
@@ -2,7 +2,8 @@
 // Use of this source code is governed by a BSD-style license that can be
 // found in the LICENSE file.
 
-import 'package:native_assets_cli/native_assets_cli.dart' hide BuildMode;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    hide BuildMode;
 
 import '../base/file_system.dart';
 import '../build_info.dart';
diff --git a/packages/flutter_tools/pubspec.yaml b/packages/flutter_tools/pubspec.yaml
index bb362038fc7..d26a910c876 100644
--- a/packages/flutter_tools/pubspec.yaml
+++ b/packages/flutter_tools/pubspec.yaml
@@ -55,8 +55,8 @@ dependencies:
 
   cli_config: 0.1.2
   graphs: 2.3.1
-  native_assets_builder: 0.3.0
-  native_assets_cli: 0.3.2
+  native_assets_builder: 0.3.2
+  native_assets_cli: 0.4.1
 
   # We depend on very specific internal implementation details of the
   # 'test' package, which change between versions, so when upgrading
@@ -118,4 +118,4 @@ dartdoc:
   # Exclude this package from the hosted API docs.
   nodoc: true
 
-# PUBSPEC CHECKSUM: cf69
+# PUBSPEC CHECKSUM: 9e6b
diff --git a/packages/flutter_tools/templates/package_ffi/pubspec.yaml.tmpl b/packages/flutter_tools/templates/package_ffi/pubspec.yaml.tmpl
index bdf1e9d6c36..ca64c29adb7 100644
--- a/packages/flutter_tools/templates/package_ffi/pubspec.yaml.tmpl
+++ b/packages/flutter_tools/templates/package_ffi/pubspec.yaml.tmpl
@@ -9,8 +9,8 @@ environment:
 dependencies:
   cli_config: ^0.1.2
   logging: ^1.2.0
-  native_assets_cli: ^0.3.2
-  native_toolchain_c: ^0.3.2
+  native_assets_cli: ^0.4.1
+  native_toolchain_c: ^0.3.4+1
 
 dev_dependencies:
   ffi: ^2.1.0
diff --git a/packages/flutter_tools/test/general.shard/android/native_assets_test.dart b/packages/flutter_tools/test/general.shard/android/native_assets_test.dart
index 0b7f610abbf..43c2955946b 100644
--- a/packages/flutter_tools/test/general.shard/android/native_assets_test.dart
+++ b/packages/flutter_tools/test/general.shard/android/native_assets_test.dart
@@ -15,8 +15,10 @@ import 'package:flutter_tools/src/build_info.dart';
 import 'package:flutter_tools/src/build_system/build_system.dart';
 import 'package:flutter_tools/src/features.dart';
 import 'package:flutter_tools/src/globals.dart' as globals;
-import 'package:native_assets_cli/native_assets_cli.dart' as native_assets_cli;
-import 'package:native_assets_cli/native_assets_cli.dart' hide BuildMode, Target;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    as native_assets_cli;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    hide BuildMode, Target;
 import 'package:package_config/package_config_types.dart';
 
 import '../../src/common.dart';
diff --git a/packages/flutter_tools/test/general.shard/build_system/targets/native_assets_test.dart b/packages/flutter_tools/test/general.shard/build_system/targets/native_assets_test.dart
index 24f7d6c7571..baa6d7df37b 100644
--- a/packages/flutter_tools/test/general.shard/build_system/targets/native_assets_test.dart
+++ b/packages/flutter_tools/test/general.shard/build_system/targets/native_assets_test.dart
@@ -13,7 +13,8 @@ import 'package:flutter_tools/src/build_system/exceptions.dart';
 import 'package:flutter_tools/src/build_system/targets/native_assets.dart';
 import 'package:flutter_tools/src/features.dart';
 import 'package:flutter_tools/src/native_assets.dart';
-import 'package:native_assets_cli/native_assets_cli.dart' as native_assets_cli;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    as native_assets_cli;
 import 'package:package_config/package_config.dart' show Package;
 
 import '../../../src/common.dart';
diff --git a/packages/flutter_tools/test/general.shard/fake_native_assets_build_runner.dart b/packages/flutter_tools/test/general.shard/fake_native_assets_build_runner.dart
index db9365180b3..fa1e8cf0e38 100644
--- a/packages/flutter_tools/test/general.shard/fake_native_assets_build_runner.dart
+++ b/packages/flutter_tools/test/general.shard/fake_native_assets_build_runner.dart
@@ -5,7 +5,7 @@
 import 'package:flutter_tools/src/native_assets.dart';
 import 'package:native_assets_builder/native_assets_builder.dart'
     as native_assets_builder;
-import 'package:native_assets_cli/native_assets_cli.dart';
+import 'package:native_assets_cli/native_assets_cli_internal.dart';
 import 'package:package_config/package_config_types.dart';
 
 /// Mocks all logic instead of using `package:native_assets_builder`, which
diff --git a/packages/flutter_tools/test/general.shard/hot_test.dart b/packages/flutter_tools/test/general.shard/hot_test.dart
index 98088d69e86..327c686f925 100644
--- a/packages/flutter_tools/test/general.shard/hot_test.dart
+++ b/packages/flutter_tools/test/general.shard/hot_test.dart
@@ -21,8 +21,10 @@ import 'package:flutter_tools/src/resident_devtools_handler.dart';
 import 'package:flutter_tools/src/resident_runner.dart';
 import 'package:flutter_tools/src/run_hot.dart';
 import 'package:flutter_tools/src/vmservice.dart';
-import 'package:native_assets_cli/native_assets_cli.dart' hide BuildMode, Target;
-import 'package:native_assets_cli/native_assets_cli.dart' as native_assets_cli;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    hide BuildMode, Target;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    as native_assets_cli;
 import 'package:package_config/package_config.dart';
 import 'package:test/fake.dart';
 import 'package:unified_analytics/unified_analytics.dart';
diff --git a/packages/flutter_tools/test/general.shard/ios/native_assets_test.dart b/packages/flutter_tools/test/general.shard/ios/native_assets_test.dart
index 1552791142a..95d0bfc2658 100644
--- a/packages/flutter_tools/test/general.shard/ios/native_assets_test.dart
+++ b/packages/flutter_tools/test/general.shard/ios/native_assets_test.dart
@@ -14,8 +14,10 @@ import 'package:flutter_tools/src/build_system/build_system.dart';
 import 'package:flutter_tools/src/features.dart';
 import 'package:flutter_tools/src/globals.dart' as globals;
 import 'package:flutter_tools/src/ios/native_assets.dart';
-import 'package:native_assets_cli/native_assets_cli.dart' hide BuildMode, Target;
-import 'package:native_assets_cli/native_assets_cli.dart' as native_assets_cli;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    hide BuildMode, Target;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    as native_assets_cli;
 import 'package:package_config/package_config_types.dart';
 
 import '../../src/common.dart';
diff --git a/packages/flutter_tools/test/general.shard/linux/native_assets_test.dart b/packages/flutter_tools/test/general.shard/linux/native_assets_test.dart
index 6c4798e5caf..bf7296ea8f6 100644
--- a/packages/flutter_tools/test/general.shard/linux/native_assets_test.dart
+++ b/packages/flutter_tools/test/general.shard/linux/native_assets_test.dart
@@ -17,8 +17,10 @@ import 'package:flutter_tools/src/features.dart';
 import 'package:flutter_tools/src/globals.dart' as globals;
 import 'package:flutter_tools/src/linux/native_assets.dart';
 import 'package:flutter_tools/src/native_assets.dart';
-import 'package:native_assets_cli/native_assets_cli.dart' hide BuildMode, Target;
-import 'package:native_assets_cli/native_assets_cli.dart' as native_assets_cli;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    hide BuildMode, Target;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    as native_assets_cli;
 import 'package:package_config/package_config_types.dart';
 
 import '../../src/common.dart';
diff --git a/packages/flutter_tools/test/general.shard/macos/native_assets_test.dart b/packages/flutter_tools/test/general.shard/macos/native_assets_test.dart
index 770766d8fe4..c934d42af2f 100644
--- a/packages/flutter_tools/test/general.shard/macos/native_assets_test.dart
+++ b/packages/flutter_tools/test/general.shard/macos/native_assets_test.dart
@@ -15,8 +15,10 @@ import 'package:flutter_tools/src/features.dart';
 import 'package:flutter_tools/src/globals.dart' as globals;
 import 'package:flutter_tools/src/macos/native_assets.dart';
 import 'package:flutter_tools/src/native_assets.dart';
-import 'package:native_assets_cli/native_assets_cli.dart' hide BuildMode, Target;
-import 'package:native_assets_cli/native_assets_cli.dart' as native_assets_cli;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    hide BuildMode, Target;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    as native_assets_cli;
 import 'package:package_config/package_config_types.dart';
 
 import '../../src/common.dart';
diff --git a/packages/flutter_tools/test/general.shard/resident_runner_test.dart b/packages/flutter_tools/test/general.shard/resident_runner_test.dart
index 454701781bc..1ddc051075f 100644
--- a/packages/flutter_tools/test/general.shard/resident_runner_test.dart
+++ b/packages/flutter_tools/test/general.shard/resident_runner_test.dart
@@ -36,9 +36,10 @@ import 'package:flutter_tools/src/run_cold.dart';
 import 'package:flutter_tools/src/run_hot.dart';
 import 'package:flutter_tools/src/version.dart';
 import 'package:flutter_tools/src/vmservice.dart';
-import 'package:native_assets_cli/native_assets_cli.dart'
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
     hide BuildMode, Target;
-import 'package:native_assets_cli/native_assets_cli.dart' as native_assets_cli;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    as native_assets_cli;
 import 'package:package_config/package_config.dart';
 import 'package:test/fake.dart';
 import 'package:unified_analytics/src/enums.dart';
diff --git a/packages/flutter_tools/test/general.shard/windows/native_assets_test.dart b/packages/flutter_tools/test/general.shard/windows/native_assets_test.dart
index e0bde767a2b..7226fa2396b 100644
--- a/packages/flutter_tools/test/general.shard/windows/native_assets_test.dart
+++ b/packages/flutter_tools/test/general.shard/windows/native_assets_test.dart
@@ -16,8 +16,10 @@ import 'package:flutter_tools/src/features.dart';
 import 'package:flutter_tools/src/globals.dart' as globals;
 import 'package:flutter_tools/src/native_assets.dart';
 import 'package:flutter_tools/src/windows/native_assets.dart';
-import 'package:native_assets_cli/native_assets_cli.dart' hide BuildMode, Target;
-import 'package:native_assets_cli/native_assets_cli.dart' as native_assets_cli;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    hide BuildMode, Target;
+import 'package:native_assets_cli/native_assets_cli_internal.dart'
+    as native_assets_cli;
 import 'package:package_config/package_config_types.dart';
 
 import '../../src/common.dart';
diff --git a/packages/flutter_tools/test/integration.shard/native_assets_test.dart b/packages/flutter_tools/test/integration.shard/native_assets_test.dart
index 4402a690688..99a7a87846c 100644
--- a/packages/flutter_tools/test/integration.shard/native_assets_test.dart
+++ b/packages/flutter_tools/test/integration.shard/native_assets_test.dart
@@ -19,7 +19,7 @@ import 'package:file/file.dart';
 import 'package:file_testing/file_testing.dart';
 import 'package:flutter_tools/src/base/logger.dart';
 import 'package:flutter_tools/src/base/os.dart';
-import 'package:native_assets_cli/native_assets_cli.dart';
+import 'package:native_assets_cli/native_assets_cli_internal.dart';
 
 import '../src/common.dart';
 import 'test_utils.dart' show ProcessResultMatcher, fileSystem, platform;
@@ -230,7 +230,7 @@ void main() {
         // Overrides the build to output static libraries.
         final String buildDotDartContentsNew = buildDotDartContents.replaceFirst(
           'final buildConfig = await BuildConfig.fromArgs(args);',
-          r'''
+          '''
   final buildConfig = await BuildConfig.fromArgs([
     '-D${LinkModePreference.configKey}=${LinkModePreference.static}',
     ...args,