-
Notifications
You must be signed in to change notification settings - Fork 18
/
Copy pathChangeLog
351 lines (200 loc) · 9.74 KB
/
ChangeLog
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
2024-11-04 Dirk Eddelbuettel <edd@debian.org>
* README.md: Document BioConductor 3.20 support
2024-10-30 Dirk Eddelbuettel <edd@debian.org>
* inst/scripts/add_cranapt_noble.sh: Updated to use gpg instead of
apt-key (following issue #72)
* README.md: Mentioned updated 'noble' aka 24.04 script too
2024-10-16 Dirk Eddelbuettel <edd@debian.org>
* README.md: Updated usage figures and chart (from late September)
2024-09-03 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Authors@R): Added
2024-07-15 Dirk Eddelbuettel <edd@debian.org>
* README.md: Update package counts
2024-06-01 Dirk Eddelbuettel <edd@debian.org>
* README.md: Update usage section showing 20 million total downloads
2024-05-13 Dirk Eddelbuettel <edd@debian.org>
* README.md: Document BioConductor 3.19 support across all three
supported releases (now that 22.04 and 20.04 both caught up)
2024-05-12 Dirk Eddelbuettel <edd@debian.org>
* README.md: Document 24.04 support
* inst/scripts/add_cranapt_noble.sh: Add new 24.04 install script
2024-05-11 Dirk Eddelbuettel <edd@debian.org>
* R/package.R (.get_source_file): Always download source file if
'force' and 'compile' are set
* R/controlFiles.R (.addDepends): Refine one regular expression
2024-05-10 Dirk Eddelbuettel <edd@debian.org>
* R/init.R: Support Ubuntu 24.04
* R/package.R: Idem
* inst/scripts/add_cranapt_noble.sh: Idem
* docker/noble/*: Build and run-time support for 24.04
2024-04-12 Dirk Eddelbuettel <edd@debian.org>
* R/init.R (.loadRuntimedepends): Support run-time dependency
declarations via config file
* R/controlFiles.R (.addDepends): Show run-time dependencies
* R/package.R (buildPackage): Source run-time dependency file
2024-03-25 Dirk Eddelbuettel <edd@debian.org>
* README.md: Update usage numbers and charts
2024-02-23 Dirk Eddelbuettel <edd@debian.org>
* vignettes/FAQ.md: Expanded FAQ, link FAQ from ToC
2024-02-16 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: More consistent color use
2024-02-12 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Package version display small correction, display
source repo more prominently
2024-02-11 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Package version display tweak
2024-02-09 Dirk Eddelbuettel <edd@debian.org>
* README.md: Update usage counts
2023-12-18 Dirk Eddelbuettel <edd@debian.org>
* README.md: Document r2u use in GitHub Actions
2023-12-12 Dirk Eddelbuettel <edd@debian.org>
* README.md: Updated totals and count
2023-11-11 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Add new '--compile' flag to force source build
2023-11-10 Dirk Eddelbuettel <edd@debian.org>
* repo: Rebuilt a number of packages following Matrix update
following discussion and analysis with Mikael Jagan
2023-11-05 Dirk Eddelbuettel <edd@debian.org>
* repo: Expanded BioConductor support adding over 100 packages
2023-11-04 Dirk Eddelbuettel <edd@debian.org>
* README.md: Mention R 4.3.2 is now the R version used and provided,
update package counts from CRAN and BioConductor
* repo: Rebuild of BioConductor packages for 3.18 release
2023-10-09 Dirk Eddelbuettel <edd@debian.org>
* R/package.R (buildPackage): Support new argument 'dryrun'
2023-09-02 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Extended to also update BioConductor packages
* R/init.R: Idem
2023-08-20 Dirk Eddelbuettel <edd@debian.org>
* README.md: Small edits and minor clarification
2023-08-16 Dirk Eddelbuettel <edd@debian.org>
* R/init.R (.setOptions): Set timeout to 180
2023-08-15 Dirk Eddelbuettel <edd@debian.org>
* README.md: A few edits throughout
2023-08-13 Dirk Eddelbuettel <edd@debian.org>
* docs/*: Added new vignette on 'codespaces'
2023-08-12 Dirk Eddelbuettel <edd@debian.org>
* .devcontainers/*: Adding documentation for Devcontainer use
2023-08-09 Dirk Eddelbuettel <edd@debian.org>
* R/init.R (.setOptions): Set timeout to 300
2023-06-03 Dirk Eddelbuettel <edd@debian.org>
* repo: The metadata for focal (20.04) has been adjusted so packages
`sf`, `gdalraster` and `FIESTA` are now available as on 22.04
2023-05-11 Dirk Eddelbuettel <edd@debian.org>
* .gitpod.Dockerfile: Update to rocker/r2u:jammy
* .gitpod.yml (vscode): Update to REditorSupport.r@2.8.0
2023-05-09 Dirk Eddelbuettel <edd@debian.org>
* repo: Several packages using the Graphics API of R itself have been
rebuilt for R 4.3.0 and its 'soft' API change
2023-04-29 Dirk Eddelbuettel <edd@debian.org>
* repo: Rebuild of BioConductor packages for 3.17 release
2023-04-25 Dirk Eddelbuettel <edd@debian.org>
* README.md: Mention R 4.3.0 is now the R version used
2023-04-14 Dirk Eddelbuettel <edd@debian.org>
* README.md: Mention rocker/r2u containers
2022-12-25 Dirk Eddelbuettel <edd@debian.org>
* docs/mkdmt-src/src/vignettes/FAQ.md: Mention that non-LTS releases
can use the LTS repos just fine.
2022-11-19 Dirk Eddelbuettel <edd@debian.org>
* inst/NEWS.Rd: Make release 0.0.4 with BioConductor 3.16
2022-09-18 Dirk Eddelbuettel <edd@debian.org>
* README.md: Mention that Docker build cannot use bspm as the
security setting used at run-time is not available during build time
* inst/docs/FAQ.md: Idem
2022-09-16 Dirk Eddelbuettel <edd@debian.org>
* README.md: Mention the new mirror r2u.stat.illinois.edu
* inst/scripts/add_cranapt_focal.sh: Use r2u.stat.illinois.edu
* inst/scripts/add_cranapt_jammy.sh: Idem
* docker/focal/run/cranapt.list: Idem
* docker/jammy/run/cranapt.list: Idem
2022-09-14 John Blischak <jdblischak@gmail.com>
* inst/scripts/add_cranapt_jammy.sh: Add missing 'apt update'
2022-09-11 Dirk Eddelbuettel <edd@debian.org>
* README.md: Update to state 'current R' via CRAN apt repo
* inst/scripts/add_cranapt_focal.sh: Idem
* inst/scripts/add_cranapt_jammy.sh: Idem
2022-09-08 Dirk Eddelbuettel <edd@debian.org>
* README.md: Update package number
2022-08-01 Dirk Eddelbuettel <edd@debian.org>
* inst/dockerize/Dockerfile: Add 'dockerize' example
* inst/dockerize/README.md: Short description
2022-07-12 Dirk Eddelbuettel <edd@debian.org>
* R/controlFiles.R (.addDepends): Special-case 'rJava' which does not
resolve its shared library given that Java libs are hidden
2022-07-07 Dirk Eddelbuettel <edd@debian.org>
* R/init.R (.loadDB, .loadAP): Make cache age a function parameter
2022-06-18 Dirk Eddelbuettel <edd@debian.org>
* README.md (Pinning): Refined setup with origin and label
* inst/scripts/add_cranapt_{focal,jammy}.sh: Idem
* docker/{focal,jammy}/{build,run}: Idem
2022-06-17 Dirk Eddelbuettel <edd@debian.org>
* R/package.R (buildPackage): Correct nlme and foreign download
2022-06-08 Dirk Eddelbuettel <edd@debian.org>
* inst/docs/FAQ.md: Add entry on Singularity
2022-06-06 Dirk Eddelbuettel <edd@debian.org>
* R/controlFiles.R: Accomodate sp with epoch
* README.md: Edits
2022-06-02 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Accomodate dash-to-dot in nlme and foreign versions
2022-06-01 Dirk Eddelbuettel <edd@debian.org>
* R/controlFiles.R: Accomodate dash-to-dot in foreign version
2022-05-31 Dirk Eddelbuettel <edd@debian.org>
* inst/docs/FAQ.md: Draft of two new entries
2022-05-29 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Correct two invisible calls
* R/controlFiles.R: Accomodate dash-to-dot in nlme version
2022-05-28 Sergio Oller <sergioller@gmail.com>
* README.md: Add missing double-quote in example
2022-05-25 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Support per-distribution blacklist
* R/init.R: Idem
* docker/focal/run/Dockerfile: Note '--security-opt
seccomp=unconfined' needed for bspm use
2022-05-22 Dirk Eddelbuettel <edd@debian.org>
* README.md: Reword headline
2022-05-21 Dirk Eddelbuettel <edd@debian.org>
* inst/scripts/add_cranapt_focal.sh: Use CRAN repo for R
* README.md: Ditto
2022-05-20 Dirk Eddelbuettel <edd@debian.org>
* R/controlFiles.R: Reflect repo in Description:
2022-05-17 Dirk Eddelbuettel <edd@debian.org>
* R/controlFiles.R: Build and cache in per distro dir
* R/package.R: Ditto
* docker/*/build/debBuild.sh: Add dist argument
* README.md: Update package numbers
2022-05-15 Dirk Eddelbuettel <edd@debian.org>
* R/controlFiles.R: Correct base package list
* R/init.R: Filter commented lines from blacklist
* R/package.R: New helper to identify updated packages
2022-05-13 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: New top-level function to build updated packages
* R/init.R: Support
* man/buildPackage.Rd: Docs
* README.md: Update package numbers
2022-05-11 Dirk Eddelbuettel <edd@debian.org>
* README.md: Switch instruction to downloading keys and storing in
/etc/apt/trusted.gpg.d/ which is now preferred, additional edits
2022-05-09 Dirk Eddelbuettel <edd@debian.org>
* inst/scripts/add_cranapt_jammy.sh: Update key use
* R/init.R: Correct a cached=file time comparison
2022-05-08 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Add nDeps
* docker/jammy/run/Dockerfile: Use asc key file
* .gitpod.Dockerfile: Switch to 22.04
2022-05-07 Dirk Eddelbuettel <edd@debian.org>
* README.md: Updated docs
* docs/*: Idem
* docker/jammy/build/*: Use http instead of mount for pinning
* docker/jammy/build/debBuild.sh: Call dpkg-buildpackage with -b
* inst/scripts/add_cranapt_focal.sh: Renamed from add_cranapt.sh
* inst/scripts/add_cranapt_jammy.sh: Added
2022-05-06 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Support building for multiple LTS releases
* R/init.R: Idem, skip test for R >= 4.0, two-tiered depends
* DESCRIPTION: Depend on R >= 4.0
2022-05-04 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Simpler interface
* inst/examples/add_cranapt.sh: Renamed from setup_r2u.sh
* README.md: Documentation updates
2022-05-03 Dirk Eddelbuettel <edd@debian.org>
* Initial version