From 8a57f451e38fa56f0ada909280eba1c25b61c745 Mon Sep 17 00:00:00 2001
From: Pavel Tomanek <shavel.tom@gmail.com>
Date: Thu, 18 Jul 2024 10:24:23 +0200
Subject: [PATCH 1/2] adding easyconfigs: SingleM-0.16.0-foss-2023a.eb,
 smafa-0.8.0-GCC-12.3.0.eb, psycopg-3.2.1-GCCcore-12.3.0.eb,
 CD-HIT-4.8.1-GCC-12.3.0.eb

---
 .../c/CD-HIT/CD-HIT-4.8.1-GCC-12.3.0.eb       |  38 +++
 .../p/psycopg/psycopg-3.2.1-GCCcore-12.3.0.eb |  26 ++
 .../s/SingleM/SingleM-0.16.0-foss-2023a.eb    | 107 ++++++++
 .../s/smafa/smafa-0.8.0-GCC-12.3.0.eb         | 235 ++++++++++++++++++
 4 files changed, 406 insertions(+)
 create mode 100644 easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.8.1-GCC-12.3.0.eb
 create mode 100644 easybuild/easyconfigs/p/psycopg/psycopg-3.2.1-GCCcore-12.3.0.eb
 create mode 100644 easybuild/easyconfigs/s/SingleM/SingleM-0.16.0-foss-2023a.eb
 create mode 100644 easybuild/easyconfigs/s/smafa/smafa-0.8.0-GCC-12.3.0.eb

diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.8.1-GCC-12.3.0.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.8.1-GCC-12.3.0.eb
new file mode 100644
index 00000000000..c4cacfb04bf
--- /dev/null
+++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.8.1-GCC-12.3.0.eb
@@ -0,0 +1,38 @@
+# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+# Updated by: Thomas Eylenbosch(Gluo N.V.), Pavel Tománek (Inuits)
+
+easyblock = 'MakeCp'
+
+name = 'CD-HIT'
+version = '4.8.1'
+
+homepage = 'http://weizhongli-lab.org/cd-hit/'
+description = """ CD-HIT is a very widely used program for clustering and 
+ comparing protein or nucleotide sequences."""
+
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
+toolchainopts = {'openmp': True}
+
+source_urls = ['https://github.com/weizhongli/cdhit/releases/download/V%(version)s/']
+sources = ['%(namelower)s-v%(version)s-2019-0228.tar.gz']
+checksums = ['26172dba3040d1ae5c73ff0ac6c3be8c8e60cc49fc7379e434cdf9cb1e7415de']
+
+dependencies = [
+    ('Perl', '5.36.1'),
+    ('zlib', '1.2.13'),
+]
+
+buildopts = ' CC="$CXX" CCFLAGS="$CPPFLAGS $CXXFLAGS"'
+
+local_list_of_executables = ['cd-hit', 'cd-hit-est', 'cd-hit-2d', 'cd-hit-est-2d', 'cd-hit-div', 'cd-hit-454']
+
+files_to_copy = [(local_list_of_executables, 'bin'), (['*.pl'], 'bin'), 'README', 'doc', 'license.txt']
+
+fix_perl_shebang_for = ['bin/*.pl']
+
+sanity_check_paths = {
+    'files': ['bin/%s' % x for x in local_list_of_executables],
+    'dirs': [],
+}
+
+moduleclass = 'bio'
diff --git a/easybuild/easyconfigs/p/psycopg/psycopg-3.2.1-GCCcore-12.3.0.eb b/easybuild/easyconfigs/p/psycopg/psycopg-3.2.1-GCCcore-12.3.0.eb
new file mode 100644
index 00000000000..5c0aab8a54e
--- /dev/null
+++ b/easybuild/easyconfigs/p/psycopg/psycopg-3.2.1-GCCcore-12.3.0.eb
@@ -0,0 +1,26 @@
+easyblock = 'PythonBundle'
+
+name = 'psycopg'
+version = '3.2.1'
+
+homepage = 'https://psycopg.org/'
+description = "Psycopg is the most popular PostgreSQL adapter for the Python programming language."
+
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+
+builddependencies = [('binutils', '2.40')]
+dependencies = [
+    ('Python', '3.11.3'),
+    ('PostgreSQL', '16.1'),
+]
+
+exts_list = [
+    (name, version, {
+        'checksums': ['dc8da6dc8729dacacda3cc2f17d2c9397a70a66cf0d2b69c91065d60d5f00cb7'],
+    }),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+moduleclass = 'lib'
diff --git a/easybuild/easyconfigs/s/SingleM/SingleM-0.16.0-foss-2023a.eb b/easybuild/easyconfigs/s/SingleM/SingleM-0.16.0-foss-2023a.eb
new file mode 100644
index 00000000000..25fc18b7c63
--- /dev/null
+++ b/easybuild/easyconfigs/s/SingleM/SingleM-0.16.0-foss-2023a.eb
@@ -0,0 +1,107 @@
+easyblock = 'PythonBundle'
+
+name = 'SingleM'
+version = '0.16.0'
+
+homepage = 'https://github.com/wwood/singlem'
+description = """SingleM is a tool for profiling shotgun metagenomes. 
+It has a particular strength in detecting microbial lineages which are not in reference databases. 
+The method it uses also makes it suitable for some related tasks, such as assessing eukaryotic contamination, 
+finding bias in genome recovery, computing ecological diversity metrics, and lineage-targeted MAG recovery."""
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+
+builddependencies = [('hatchling', '1.18.0')]
+dependencies = [
+    ('Python', '3.11.3'),
+    ('Python-bundle-PyPI', '2023.06'),
+    ('SciPy-bundle', '2023.07'),
+    ('Biopython', '1.83'),
+    ('polars', '0.20.2'),
+    ('tqdm', '4.66.1'),
+    ('Arrow', '14.0.1'),
+    ('DIAMOND', '2.1.8'),
+    ('HMMER', '3.4'),
+    ('MAFFT', '7.520', '-with-extensions'),
+    ('OrfM', '0.7.1'),
+    ('mfqe', '0.5.0'),
+    ('KronaTools', '2.8.1'),
+    ('pplacer', '1.1.alpha19', '', SYSTEM),
+    ('SRA-Toolkit', '3.0.10'),
+    ('Seqmagick', '0.8.6'),
+    ('ExpressBetaDiversity', '1.0.10'),
+    ('FastTree', '2.1.11'),
+    ('SQLAlchemy', '2.0.25'),
+    ('CD-HIT', '4.8.1'),
+    ('smafa', '0.8.0'),
+    ('prodigal', '2.6.3'),
+    ('biom-format', '2.1.15'),
+    ('DendroPy', '4.6.1'),
+    ('PyYAML', '6.0'),
+    ('psycopg', '3.2.1'),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+exts_list = [
+    ('psycopg2-binary', '2.9.9', {
+        'modulename': 'psycopg2',
+        'checksums': ['7f01846810177d829c7692f1f5ada8096762d9172af1b1a28d4ab5b77c923c1c'],
+    }),
+    ('sqlparse', '0.5.1', {
+        'checksums': ['bb6b4df465655ef332548e24f08e205afc81b9ab86cb1c45657a7ff173a3a00e'],
+    }),
+    ('sorted_nearest', '0.0.39', {
+        'checksums': ['16a51d5db87ae226b47ace43c176bb672477a1b7ba8052ea9291a6356c9c69b1'],
+    }),
+    ('ncls', '0.0.68', {
+        'checksums': ['81aaa5abb123bb21797ed2f8ef921e20222db14a3ecbc61ccf447532f2b7ba93'],
+    }),
+    ('natsort', '8.4.0', {
+        'checksums': ['45312c4a0e5507593da193dedd04abb1469253b601ecaf63445ad80f0a1ea581'],
+    }),
+    ('argparse-manpage-birdtools', '1.7.0', {
+        'modulename': 'build_manpages',
+        'checksums': ['20eae3079a4a2dbe1a7557ef7276a4d8e5a44c7c4223afb50f4f1d0ae0e7d103'],
+    }),
+    ('taxtastic', '0.10.0', {
+        'checksums': ['32db30aa2e499fbae913b991cd087fa69684ac4ff934b957c30b6085866f1748'],
+    }),
+    ('zenodo_backpack', '0.3.1', {
+        'checksums': ['dc91f3c427f976465789746e94736abfa536cf42dc2e49b6d6067382a9a39b26'],
+    }),
+    ('bird_tool_utils', '0.4.1', {
+        'checksums': ['6fe80f9608626427e8d382c5341c24088d61f17336fb6ce834d40aa4577499b5'],
+    }),
+    ('fastalite', '0.4.1', {
+        'checksums': ['e85413ee22bdb3fe0f73f5226771cf71eb33074ccdf8bbefff3a1bc6242de37c'],
+    }),
+    ('squarify', '0.4.3', {
+        'checksums': ['54091f6ad175f7f201f8934574e647ce1b50dedc478c5fd968688eb7d7469f95'],
+    }),
+    ('pyranges', '0.0.129', {
+        'checksums': ['bee83b4fad0062be9586668c6b0fc4270d5e761951975e018202993680071fb3'],
+    }),
+    ('extern', '0.4.1', {
+        'checksums': ['0ff01adc2ad423f3d1e31641024b3974569fb0127b4d925bc6bed1cb86b6b1e4'],
+    }),
+    ('graftm', '0.15.1', {
+        'checksums': ['80d828c311d2d6067977cfad5b6bac7cbc5d223ef8ab770d676b39bf2bc75163'],
+    }),
+    ('singlem', version, {
+        'checksums': ['64e43a6a40795d68ff5aed7dfff9a94532b862f25a28c27de7d588d64a8c7f79'],
+    }),
+]
+
+sanity_check_paths = {
+    'files': ['bin/graftM', 'bin/singlem'],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+sanity_check_commands = [
+    "graftM --help",
+    "singlem --help",
+]
+
+moduleclass = 'bio'
diff --git a/easybuild/easyconfigs/s/smafa/smafa-0.8.0-GCC-12.3.0.eb b/easybuild/easyconfigs/s/smafa/smafa-0.8.0-GCC-12.3.0.eb
new file mode 100644
index 00000000000..342d27e7548
--- /dev/null
+++ b/easybuild/easyconfigs/s/smafa/smafa-0.8.0-GCC-12.3.0.eb
@@ -0,0 +1,235 @@
+easyblock = 'Cargo'
+
+name = 'smafa'
+version = '0.8.0'
+
+homepage = 'https://github.com/wwood/smafa'
+description = 'Biological sequence aligner for pre-aligned sequences.'
+
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
+
+source_urls = ['https://github.com/wwood/smafa/archive/']
+sources = ['v%(version)s.tar.gz']
+checksums = [
+    {'v0.8.0.tar.gz': '6f103ecd5cdf36fb61572a757732eeb07e905c61b497fa247c1a8397ee775c2d'},
+    {'addr2line-0.22.0.tar.gz': '6e4503c46a5c0c7844e948c9a4d6acd9f50cccb4de1c48eb9e291ea17470c678'},
+    {'adler-1.0.2.tar.gz': 'f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe'},
+    {'aho-corasick-1.1.3.tar.gz': '8e60d3430d3a69478ad0993f19238d2df97c507009a52b3c10addcd7f6bcb916'},
+    {'anstream-0.6.14.tar.gz': '418c75fa768af9c03be99d17643f93f79bbba589895012a80e3452a19ddda15b'},
+    {'anstyle-1.0.7.tar.gz': '038dfcf04a5feb68e9c60b21c9625a54c2c0616e79b72b0fd87075a056ae1d1b'},
+    {'anstyle-parse-0.2.4.tar.gz': 'c03a11a9034d92058ceb6ee011ce58af4a9bf61491aa7e1e59ecd24bd40d22d4'},
+    {'anstyle-query-1.1.0.tar.gz': 'ad186efb764318d35165f1758e7dcef3b10628e26d41a44bc5550652e6804391'},
+    {'anstyle-wincon-3.0.3.tar.gz': '61a38449feb7068f52bb06c12759005cf459ee52bb4adc1d5a7c4322d716fb19'},
+    {'assert_cli-0.6.3.tar.gz': 'a29ab7c0ed62970beb0534d637a8688842506d0ff9157de83286dacd065c8149'},
+    {'atomic-polyfill-1.0.3.tar.gz': '8cf2bce30dfe09ef0bfaef228b9d414faaf7e563035494d7fe092dba54b300f4'},
+    {'autocfg-1.3.0.tar.gz': '0c4b4d0bd25bd0b74681c0ad21497610ce1b7c91b1022cd21c80c6fbdd9476b0'},
+    {'backtrace-0.3.73.tar.gz': '5cc23269a4f8976d0a4d2e7109211a419fe30e8d88d677cd60b6bc79c5732e0a'},
+    {'bird_tool_utils-0.4.1.tar.gz': '6f5f475a22ef913421b64a8d09fad619d9a3a828a5a7450e9b32ab177aa3df56'},
+    {'bird_tool_utils-man-0.4.0.tar.gz': 'a263d1717fd146db3c9bfc0668f9bf19d9078a79fa2c1ba54f00b6d8702d4e0b'},
+    {'bitflags-2.6.0.tar.gz': 'b048fb63fd8b5923fc5aa7b340d8e156aec7ec02f0c78fa8a6ddc2613f6f71de'},
+    {'buffer-redux-1.0.1.tar.gz': '4c9f8ddd22e0a12391d1e7ada69ec3b0da1914f1cec39c5cf977143c5b2854f5'},
+    {'bytecount-0.6.8.tar.gz': '5ce89b21cab1437276d2650d57e971f9d548a2d9037cc231abdc0562b97498ce'},
+    {'byteorder-1.5.0.tar.gz': '1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b'},
+    {'bzip2-0.4.4.tar.gz': 'bdb116a6ef3f6c3698828873ad02c3014b3c85cadb88496095628e3ef1e347f8'},
+    {'bzip2-sys-0.1.11+1.0.8.tar.gz': '736a955f3fa7875102d57c82b8cac37ec45224a07fd32d58f9f7a186b6cd4cdc'},
+    {'cargo-husky-1.5.0.tar.gz': '7b02b629252fe8ef6460461409564e2c21d0c8e77e0944f3d189ff06c4e932ad'},
+    {'cc-1.1.5.tar.gz': '324c74f2155653c90b04f25b2a47a8a631360cb908f92a772695f430c7e31052'},
+    {'cfg-if-1.0.0.tar.gz': 'baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd'},
+    {'clap-4.5.9.tar.gz': '64acc1846d54c1fe936a78dc189c34e28d3f5afc348403f28ecf53660b9b8462'},
+    {'clap_builder-4.5.9.tar.gz': '6fb8393d67ba2e7bfaf28a23458e4e2b543cc73a99595511eb207fdb8aede942'},
+    {'clap_lex-0.7.1.tar.gz': '4b82cf0babdbd58558212896d1a4272303a57bdb245c2bf1147185fb45640e70'},
+    {'cobs-0.2.3.tar.gz': '67ba02a97a2bd10f4b59b25c7973101c79642302776489e030cd13cdab09ed15'},
+    {'colorchoice-1.0.1.tar.gz': '0b6a852b24ab71dffc585bcb46eaf7959d175cb865a7152e35b348d1b2960422'},
+    {'colored-1.9.4.tar.gz': '5a5f741c91823341bebf717d4c71bda820630ce065443b58bd1b7451af008355'},
+    {'crc32fast-1.4.2.tar.gz': 'a97769d94ddab943e4510d138150169a2758b5ef3eb191a9ee688de3e23ef7b3'},
+    {'critical-section-1.1.2.tar.gz': '7059fff8937831a9ae6f0fe4d658ffabf58f2ca96aa9dec1c889f936f705f216'},
+    {'difference-2.0.0.tar.gz': '524cbf6897b527295dff137cec09ecf3a05f4fddffd7dfcd1585403449e74198'},
+    {'embedded-io-0.4.0.tar.gz': 'ef1a6892d9eef45c8fa6b9e0086428a2cca8491aca8f787c534a3d6d0bcb3ced'},
+    {'env_logger-0.10.2.tar.gz': '4cd405aab171cb85d6735e5c8d9db038c17d3ca007a4d2c25f337935c3d90580'},
+    {'environment-0.1.1.tar.gz': '1f4b14e20978669064c33b4c1e0fb4083412e40fe56cbea2eae80fd7591503ee'},
+    {'errno-0.3.9.tar.gz': '534c5cf6194dfab3db3242765c03bbe257cf92f22b38f6bc0c58d59108a820ba'},
+    {'failure-0.1.8.tar.gz': 'd32e9bd16cc02eae7db7ef620b392808b89f6a5e16bb3497d159c6b92a0f4f86'},
+    {'failure_derive-0.1.8.tar.gz': 'aa4da3c766cd7a0db8242e326e9e4e081edd567072893ed320008189715366a4'},
+    {'fastrand-2.1.0.tar.gz': '9fc0510504f03c51ada170672ac806f1f105a88aa97a5281117e1ddc3368e51a'},
+    {'flate2-1.0.30.tar.gz': '5f54427cfd1c7829e2a139fcefea601bf088ebca651d2bf53ebc600eac295dae'},
+    {'gimli-0.29.0.tar.gz': '40ecd4077b5ae9fd2e9e169b102c6c330d0605168eb0e8bf79952b256dbefffd'},
+    {'hash32-0.2.1.tar.gz': 'b0c35f58762feb77d74ebe43bdbc3210f09be9fe6742234d573bacc26ed92b67'},
+    {'heapless-0.7.17.tar.gz': 'cdc6457c0eb62c71aac4bc17216026d8410337c4126773b9c5daba343f17964f'},
+    {'hermit-abi-0.3.9.tar.gz': 'd231dfb89cfffdbc30e7fc41579ed6066ad03abda9e567ccafae602b97ec5024'},
+    {'humantime-2.1.0.tar.gz': '9a3a5bfb195931eeb336b2a7b4d761daec841b97f947d34394601737a7bba5e4'},
+    {'is-terminal-0.4.12.tar.gz': 'f23ff5ef2b80d608d61efee834934d862cd92461afc0560dedf493e4c033738b'},
+    {'is_terminal_polyfill-1.70.0.tar.gz': 'f8478577c03552c21db0e2724ffb8986a5ce7af88107e6be5d2ee6e158c12800'},
+    {'itoa-1.0.11.tar.gz': '49f1f14873335454500d59611f1cf4a4b0f786f9ac11f4312a78e4cf2566695b'},
+    {'lazy_static-1.5.0.tar.gz': 'bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe'},
+    {'libc-0.2.155.tar.gz': '97b3888a4aecf77e811145cadf6eef5901f4782c53886191b2f693f24761847c'},
+    {'linux-raw-sys-0.4.14.tar.gz': '78b3ae25bc7c8c38cec158d1f2757ee79e9b3740fbc7ccf0e59e4b08d793fa89'},
+    {'lock_api-0.4.12.tar.gz': '07af8b9cdd281b7915f413fa73f29ebd5d55d0d3f0155584dade1ff18cea1b17'},
+    {'log-0.4.22.tar.gz': 'a7a70ba024b9dc04c27ea2f0c0548feb474ec5c54bba33a7f72f873a39d07b24'},
+    {'lzma-sys-0.1.20.tar.gz': '5fda04ab3764e6cde78b9974eec4f779acaba7c4e84b36eca3cf77c581b85d27'},
+    {'memchr-2.7.4.tar.gz': '78ca9ab1a0babb1e7d5695e3530886289c18cf2f87ec19a575a0abdce112e3a3'},
+    {'miniz_oxide-0.7.4.tar.gz': 'b8a240ddb74feaf34a79a7add65a741f3167852fba007066dcac1ca548d89c08'},
+    {'needletail-0.5.1.tar.gz': 'db05a5ab397f64070d8c998fa0fbb84e484b81f95752af317dac183a82d9295d'},
+    {'object-0.36.1.tar.gz': '081b846d1d56ddfc18fdf1a922e4f6e07a11768ea1b92dec44e42b72712ccfce'},
+    {'pkg-config-0.3.30.tar.gz': 'd231b230927b5e4ad203db57bbcbee2802f6bce620b1e4a9024a07d94e2907ec'},
+    {'postcard-1.0.8.tar.gz': 'a55c51ee6c0db07e68448e336cf8ea4131a620edefebf9893e759b2d793420f8'},
+    {'proc-macro2-1.0.86.tar.gz': '5e719e8df665df0d1c8fbfd238015744736151d4445ec0836b8e628aae103b77'},
+    {'quote-1.0.36.tar.gz': '0fa76aaf39101c457836aec0ce2316dbdc3ab723cdda1c6bd4e6ad4208acaca7'},
+    {'regex-1.10.5.tar.gz': 'b91213439dad192326a0d7c6ee3955910425f441d7038e0d6933b0aec5c4517f'},
+    {'regex-automata-0.4.7.tar.gz': '38caf58cc5ef2fed281f89292ef23f6365465ed9a41b7a7754eb4e26496c92df'},
+    {'regex-syntax-0.8.4.tar.gz': '7a66a03ae7c801facd77a29370b4faec201768915ac14a721ba36f20bc9c209b'},
+    {'roff-0.1.0.tar.gz': 'e33e4fb37ba46888052c763e4ec2acfedd8f00f62897b630cadb6298b833675e'},
+    {'rustc-demangle-0.1.24.tar.gz': '719b953e2095829ee67db738b3bfa9fa368c94900df327b3f07fe6e794d2fe1f'},
+    {'rustc_version-0.4.0.tar.gz': 'bfa0f585226d2e68097d4f95d113b15b83a82e819ab25717ec0590d9584ef366'},
+    {'rustix-0.38.34.tar.gz': '70dc5ec042f7a43c4a73241207cecc9873a06d45debb38b329f8541d85c2730f'},
+    {'ryu-1.0.18.tar.gz': 'f3cb5ba0dc43242ce17de99c180e96db90b235b8a9fdc9543c96d2209116bd9f'},
+    {'scopeguard-1.2.0.tar.gz': '94143f37725109f92c262ed2cf5e59bce7498c01bcc1502d7b9afe439a4e9f49'},
+    {'semver-1.0.23.tar.gz': '61697e0a1c7e512e84a621326239844a24d8207b4669b41bc18b32ea5cbf988b'},
+    {'serde-1.0.204.tar.gz': 'bc76f558e0cbb2a839d37354c575f1dc3fdc6546b5be373ba43d95f231bf7c12'},
+    {'serde_derive-1.0.204.tar.gz': 'e0cd7e117be63d3c3678776753929474f3b04a43a080c744d6b0ae2a8c28e222'},
+    {'serde_json-1.0.120.tar.gz': '4e0d21c9a8cae1235ad58a00c11cb40d4b1e5c784f1ef2c537876ed6ffd8b7c5'},
+    {'spin-0.9.8.tar.gz': '6980e8d7511241f8acf4aebddbb1ff938df5eebe98691418c4468d0b72a96a67'},
+    {'stable_deref_trait-1.2.0.tar.gz': 'a8f112729512f8e442d81f95a8a7ddf2b7c6b8a1a6f509a95864142b30cab2d3'},
+    {'strsim-0.11.1.tar.gz': '7da8b5736845d9f2fcb837ea5d9e2628564b3b043a70948a3f0b778838c5fb4f'},
+    {'syn-1.0.109.tar.gz': '72b64191b275b66ffe2469e8af2c1cfe3bafa67b529ead792a6d0160888b4237'},
+    {'syn-2.0.71.tar.gz': 'b146dcf730474b4bcd16c311627b31ede9ab149045db4d6088b3becaea046462'},
+    {'synstructure-0.12.6.tar.gz': 'f36bdaa60a83aca3921b5259d5400cbf5e90fc51931376a9bd4a0eb79aa7210f'},
+    {'tempfile-3.10.1.tar.gz': '85b77fafb263dd9d05cbeac119526425676db3784113aa9295c88498cbf8bff1'},
+    {'termcolor-1.4.1.tar.gz': '06794f8f6c5c898b3275aebefa6b8a1cb24cd2c6c79397ab15774837a0bc5755'},
+    {'unicode-ident-1.0.12.tar.gz': '3354b9ac3fae1ff6755cb6db53683adb661634f67557942dea4facebec0fee4b'},
+    {'unicode-xid-0.2.4.tar.gz': 'f962df74c8c05a667b5ee8bcf162993134c104e96440b663c8daa176dc772d8c'},
+    {'utf8parse-0.2.2.tar.gz': '06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821'},
+    {'version-compare-0.1.1.tar.gz': '579a42fc0b8e0c63b76519a339be31bed574929511fa53c1a3acae26eb258f29'},
+    {'winapi-0.3.9.tar.gz': '5c839a674fcd7a98952e593242ea400abe93992746761e38641405d28b00f419'},
+    {'winapi-i686-pc-windows-gnu-0.4.0.tar.gz': 'ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6'},
+    {'winapi-util-0.1.8.tar.gz': '4d4cc384e1e73b93bafa6fb4f1df8c41695c8a91cf9c4c64358067d15a7b6c6b'},
+    {'winapi-x86_64-pc-windows-gnu-0.4.0.tar.gz': '712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f'},
+    {'windows-sys-0.52.0.tar.gz': '282be5f36a8ce781fad8c8ae18fa3f9beff57ec1b52cb3de0789201425d9a33d'},
+    {'windows-targets-0.52.6.tar.gz': '9b724f72796e036ab90c1021d4780d4d3d648aca59e491e6b98e725b84e99973'},
+    {'windows_aarch64_gnullvm-0.52.6.tar.gz': '32a4622180e7a0ec044bb555404c800bc9fd9ec262ec147edd5989ccd0c02cd3'},
+    {'windows_aarch64_msvc-0.52.6.tar.gz': '09ec2a7bb152e2252b53fa7803150007879548bc709c039df7627cabbd05d469'},
+    {'windows_i686_gnu-0.52.6.tar.gz': '8e9b5ad5ab802e97eb8e295ac6720e509ee4c243f69d781394014ebfe8bbfa0b'},
+    {'windows_i686_gnullvm-0.52.6.tar.gz': '0eee52d38c090b3caa76c563b86c3a4bd71ef1a819287c19d586d7334ae8ed66'},
+    {'windows_i686_msvc-0.52.6.tar.gz': '240948bc05c5e7c6dabba28bf89d89ffce3e303022809e73deaefe4f6ec56c66'},
+    {'windows_x86_64_gnu-0.52.6.tar.gz': '147a5c80aabfbf0c7d901cb5895d1de30ef2907eb21fbbab29ca94c5b08b1a78'},
+    {'windows_x86_64_gnullvm-0.52.6.tar.gz': '24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d'},
+    {'windows_x86_64_msvc-0.52.6.tar.gz': '589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec'},
+    {'xz2-0.1.7.tar.gz': '388c44dc09d76f1536602ead6d325eb532f5c122f17782bd57fb47baeeb767e2'},
+]
+
+builddependencies = [
+    ('Rust', '1.75.0'),
+]
+
+sanity_check_paths = {
+    'files': ['bin/%(namelower)s'],
+    'dirs': [],
+}
+
+sanity_check_commands = ["%(namelower)s --help"]
+
+crates = [
+    ('addr2line', '0.22.0'),
+    ('adler', '1.0.2'),
+    ('aho-corasick', '1.1.3'),
+    ('anstream', '0.6.14'),
+    ('anstyle', '1.0.7'),
+    ('anstyle-parse', '0.2.4'),
+    ('anstyle-query', '1.1.0'),
+    ('anstyle-wincon', '3.0.3'),
+    ('assert_cli', '0.6.3'),
+    ('atomic-polyfill', '1.0.3'),
+    ('autocfg', '1.3.0'),
+    ('backtrace', '0.3.73'),
+    ('bird_tool_utils', '0.4.1'),
+    ('bird_tool_utils-man', '0.4.0'),
+    ('bitflags', '2.6.0'),
+    ('buffer-redux', '1.0.1'),
+    ('bytecount', '0.6.8'),
+    ('byteorder', '1.5.0'),
+    ('bzip2', '0.4.4'),
+    ('bzip2-sys', '0.1.11+1.0.8'),
+    ('cargo-husky', '1.5.0'),
+    ('cc', '1.1.5'),
+    ('cfg-if', '1.0.0'),
+    ('clap', '4.5.9'),
+    ('clap_builder', '4.5.9'),
+    ('clap_lex', '0.7.1'),
+    ('cobs', '0.2.3'),
+    ('colorchoice', '1.0.1'),
+    ('colored', '1.9.4'),
+    ('crc32fast', '1.4.2'),
+    ('critical-section', '1.1.2'),
+    ('difference', '2.0.0'),
+    ('embedded-io', '0.4.0'),
+    ('env_logger', '0.10.2'),
+    ('environment', '0.1.1'),
+    ('errno', '0.3.9'),
+    ('failure', '0.1.8'),
+    ('failure_derive', '0.1.8'),
+    ('fastrand', '2.1.0'),
+    ('flate2', '1.0.30'),
+    ('gimli', '0.29.0'),
+    ('hash32', '0.2.1'),
+    ('heapless', '0.7.17'),
+    ('hermit-abi', '0.3.9'),
+    ('humantime', '2.1.0'),
+    ('is-terminal', '0.4.12'),
+    ('is_terminal_polyfill', '1.70.0'),
+    ('itoa', '1.0.11'),
+    ('lazy_static', '1.5.0'),
+    ('libc', '0.2.155'),
+    ('linux-raw-sys', '0.4.14'),
+    ('lock_api', '0.4.12'),
+    ('log', '0.4.22'),
+    ('lzma-sys', '0.1.20'),
+    ('memchr', '2.7.4'),
+    ('miniz_oxide', '0.7.4'),
+    ('needletail', '0.5.1'),
+    ('object', '0.36.1'),
+    ('pkg-config', '0.3.30'),
+    ('postcard', '1.0.8'),
+    ('proc-macro2', '1.0.86'),
+    ('quote', '1.0.36'),
+    ('regex', '1.10.5'),
+    ('regex-automata', '0.4.7'),
+    ('regex-syntax', '0.8.4'),
+    ('roff', '0.1.0'),
+    ('rustc-demangle', '0.1.24'),
+    ('rustc_version', '0.4.0'),
+    ('rustix', '0.38.34'),
+    ('ryu', '1.0.18'),
+    ('scopeguard', '1.2.0'),
+    ('semver', '1.0.23'),
+    ('serde', '1.0.204'),
+    ('serde_derive', '1.0.204'),
+    ('serde_json', '1.0.120'),
+    ('spin', '0.9.8'),
+    ('stable_deref_trait', '1.2.0'),
+    ('strsim', '0.11.1'),
+    ('syn', '1.0.109'),
+    ('syn', '2.0.71'),
+    ('synstructure', '0.12.6'),
+    ('tempfile', '3.10.1'),
+    ('termcolor', '1.4.1'),
+    ('unicode-ident', '1.0.12'),
+    ('unicode-xid', '0.2.4'),
+    ('utf8parse', '0.2.2'),
+    ('version-compare', '0.1.1'),
+    ('winapi', '0.3.9'),
+    ('winapi-i686-pc-windows-gnu', '0.4.0'),
+    ('winapi-util', '0.1.8'),
+    ('winapi-x86_64-pc-windows-gnu', '0.4.0'),
+    ('windows-sys', '0.52.0'),
+    ('windows-targets', '0.52.6'),
+    ('windows_aarch64_gnullvm', '0.52.6'),
+    ('windows_aarch64_msvc', '0.52.6'),
+    ('windows_i686_gnu', '0.52.6'),
+    ('windows_i686_gnullvm', '0.52.6'),
+    ('windows_i686_msvc', '0.52.6'),
+    ('windows_x86_64_gnu', '0.52.6'),
+    ('windows_x86_64_gnullvm', '0.52.6'),
+    ('windows_x86_64_msvc', '0.52.6'),
+    ('xz2', '0.1.7'),
+]
+
+moduleclass = 'bio'

From d35df4bafbcf74893ba81e4f050942e96314f298 Mon Sep 17 00:00:00 2001
From: Pavel Tomanek <shavel.tom@gmail.com>
Date: Tue, 20 Aug 2024 16:08:35 +0200
Subject: [PATCH 2/2] update cd-hit with sanity_check_commands

---
 easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.8.1-GCC-12.3.0.eb | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.8.1-GCC-12.3.0.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.8.1-GCC-12.3.0.eb
index c4cacfb04bf..bd59609605c 100644
--- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.8.1-GCC-12.3.0.eb
+++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.8.1-GCC-12.3.0.eb
@@ -1,4 +1,5 @@
 # This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+# changed toolchain and Perl version
 # Updated by: Thomas Eylenbosch(Gluo N.V.), Pavel Tománek (Inuits)
 
 easyblock = 'MakeCp'
@@ -35,4 +36,6 @@ sanity_check_paths = {
     'dirs': [],
 }
 
+sanity_check_commands = ["cd-hit -h | grep 'CD-HIT version %(version)s'"]
+
 moduleclass = 'bio'