disable another test for netCDF 4.9.0 because it runs excessive long on some types of filesystems

Author: boegel

easybuild/easyconfigs/n/netCDF/netCDF-4.9.0-gompi-2022.10.eb

@@ -14,13 +14,13 @@ sources = ['v%(version)s.tar.gz']
 patches = [
     'netCDF-%(version)s_fix-lib-name.patch',
     'netCDF-%(version)s_fix-linking-errors.patch',
-    'netCDF-%(version)s_skip-nasa-test.patch',
+    'netCDF-%(version)s_skip-timeout-tests.patch',
 ]
 checksums = [
-    '9f4cb864f3ab54adb75409984c6202323d2fc66c003e5308f3cdf224ed41c0a6',  # v4.9.0.tar.gz
-    'ed45ae6c49cf8dcddaadef4c5cf403049bf3f761187413d7b03754d319345d6a',  # netCDF-4.9.0_fix-lib-name.patch
-    '2b9579c149579d137eb16ae5d790787774033dcec49c0d4993d9859f224e7b15',  # netCDF-4.9.0_fix-linking-errors.patch
-    '19d99e03c048b037dc01f03f5b8ddc910ebaceb076d0f050540d348f26dfcd2a',  # netCDF-4.9.0_skip-nasa-test.patch
+    {'v4.9.0.tar.gz': '9f4cb864f3ab54adb75409984c6202323d2fc66c003e5308f3cdf224ed41c0a6'},
+    {'netCDF-4.9.0_fix-lib-name.patch': 'ed45ae6c49cf8dcddaadef4c5cf403049bf3f761187413d7b03754d319345d6a'},
+    {'netCDF-4.9.0_fix-linking-errors.patch': '2b9579c149579d137eb16ae5d790787774033dcec49c0d4993d9859f224e7b15'},
+    {'netCDF-4.9.0_skip-timeout-tests.patch': '06c29480c6a3c351c7d79c3bb972e3fdc017af6a5c93690b4d21aba23311d2d5'},
 ]
 
 builddependencies = [
@@ -45,9 +45,8 @@ configopts = [
     "-DENABLE_DAP_REMOTE_TESTS=OFF -DBUILD_SHARED_LIBS=ON",
 ]
 
-# some tests try to start 16 MPI ranks, so we need to allow oversubscription to avoid failing tests;
-# increase test timeout, since some tests take an awful long time on some type of filesystems
-pretestopts = "OMPI_MCA_rmaps_base_oversubscribe=1 ARGS='--timeout 100000' "
+# some tests try to start 16 MPI ranks, so we need to allow oversubscription to avoid failing tests
+pretestopts = "OMPI_MCA_rmaps_base_oversubscribe=1 "
 
 runtest = 'test'
 

easybuild/easyconfigs/n/netCDF/netCDF-4.9.0_skip-timeout-tests.patch

@@ -0,0 +1,27 @@
+skip tests that take an excessive amount of time on some types of filesystems,
+triggering a timeout for nc_test4_run_par_test
+author: Kenneth Hoste (HPC-UGent)
+diff -ru netcdf-c-4.9.0.orig/nc_test4/run_par_test.sh.in netcdf-c-4.9.0/nc_test4/run_par_test.sh.in
+--- netcdf-c-4.9.0.orig/nc_test4/run_par_test.sh.in	2022-06-10 23:04:15.000000000 +0200
++++ netcdf-c-4.9.0/nc_test4/run_par_test.sh.in	2022-12-21 09:21:33.329871966 +0100
+@@ -33,13 +33,14 @@
+ #@MPIEXEC@ -n 16 ./tst_parallel4
+ #@MPIEXEC@ -n 32 ./tst_parallel4
+ #@MPIEXEC@ -n 64 ./tst_parallel4
+-echo
+-echo "Testing collective writes with some 0 element writes..."
+-@MPIEXEC@ -n 4 ./tst_parallel5
+ 
+-echo
+-echo "Parallel Performance Test for NASA"
+-@MPIEXEC@ -n 4 ./tst_nc4perf
++# disable tests that take a very long time on some types of filesystems
++#echo
++#echo "Testing collective writes with some 0 element writes..."
++#@MPIEXEC@ -n 4 ./tst_parallel5
++#echo
++#echo "Parallel Performance Test for NASA"
++#@MPIEXEC@ -n 4 ./tst_nc4perf
+ 
+ echo
+ echo "Parallel I/O test for Collective I/O, contributed by HDF Group."