diff --git a/easybuild/easyconfigs/b/Bismark/Bismark-0.24.0-GCC-11.3.0.eb b/easybuild/easyconfigs/b/Bismark/Bismark-0.24.0-GCC-11.3.0.eb new file mode 100644 index 00000000000..29cad67bb97 --- /dev/null +++ b/easybuild/easyconfigs/b/Bismark/Bismark-0.24.0-GCC-11.3.0.eb @@ -0,0 +1,41 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2013-2014 The Cyprus Institute +# Authors:: Thekla Loizou +# License:: MIT/GPL +# +# Updated to 0.23.1 +# J. Sassmannshausen NHS/GSTT + +easyblock = 'Tarball' + +name = 'Bismark' +version = '0.24.0' + +homepage = 'https://www.bioinformatics.babraham.ac.uk/projects/bismark/' +description = "A tool to map bisulfite converted sequence reads and determine cytosine methylation states" + +toolchain = {'name': 'GCC', 'version': '11.3.0'} + +source_urls = ['https://github.com/FelixKrueger/Bismark/archive/refs/tags/'] +sources = ['%(version)s.tar.gz'] +checksums = ['dd58957bd6eac44f3a6e74e9a5ef69c8d19da0e0b64feb7d019a994fe6087d7d'] + +dependencies = [ + ('Perl', '5.34.1'), + ('Bowtie2', '2.4.5'), + ('SAMtools', '1.16.1'), +] + +sanity_check_commands = ['bismark --help'] + +sanity_check_paths = { + 'files': ['bismark', 'bismark2bedGraph', 'bismark2report', 'bismark_genome_preparation', + 'bismark_methylation_extractor', 'coverage2cytosine', 'deduplicate_bismark'], + 'dirs': [], +} + +modextrapaths = {'PATH': ''} + +moduleclass = 'bio'