From 4bd1e64e58e4bf9358a2809b4ce8c8e8c0a6697d Mon Sep 17 00:00:00 2001
From: Kenneth Hoste <kenneth.hoste@ugent.be>
Date: Sat, 1 Apr 2023 20:55:50 +0200
Subject: [PATCH] {data}[foss/2021a] scib v1.1.3, Deprecated v1.2.13 w/ Python
 3.9.5

---
 .../Deprecated-1.2.13-foss-2021a.eb           | 29 ++++++++++++++
 .../s/scib/scib-1.1.3-foss-2021a.eb           | 39 +++++++++++++++++++
 2 files changed, 68 insertions(+)
 create mode 100644 easybuild/easyconfigs/d/Deprecated/Deprecated-1.2.13-foss-2021a.eb
 create mode 100644 easybuild/easyconfigs/s/scib/scib-1.1.3-foss-2021a.eb

diff --git a/easybuild/easyconfigs/d/Deprecated/Deprecated-1.2.13-foss-2021a.eb b/easybuild/easyconfigs/d/Deprecated/Deprecated-1.2.13-foss-2021a.eb
new file mode 100644
index 00000000000..37b1d866da5
--- /dev/null
+++ b/easybuild/easyconfigs/d/Deprecated/Deprecated-1.2.13-foss-2021a.eb
@@ -0,0 +1,29 @@
+# author: Denis Kristak (INUITS)
+easyblock = 'PythonBundle'
+
+name = 'Deprecated'
+version = '1.2.13'
+
+homepage = 'https://github.com/tantale/deprecated'
+description = "If you need to mark a function or a method as deprecated, you can use the @deprecated decorator."
+
+toolchain = {'name': 'foss', 'version': '2021a'}
+
+dependencies = [
+    ('Python', '3.9.5'),
+]
+
+use_pip = True
+
+exts_list = [
+    ('wrapt', '1.15.0', {
+        'checksums': ['d06730c6aed78cee4126234cf2d071e01b44b915e725a6cb439a879ec9754a3a'],
+    }),
+    (name, version, {
+        'checksums': ['43ac5335da90c31c24ba028af536a91d41d53f9e6901ddb021bcc572ce44e38d'],
+    }),
+]
+
+sanity_pip_check = True
+
+moduleclass = 'tools'
diff --git a/easybuild/easyconfigs/s/scib/scib-1.1.3-foss-2021a.eb b/easybuild/easyconfigs/s/scib/scib-1.1.3-foss-2021a.eb
new file mode 100644
index 00000000000..ffd4fc238c0
--- /dev/null
+++ b/easybuild/easyconfigs/s/scib/scib-1.1.3-foss-2021a.eb
@@ -0,0 +1,39 @@
+# author: Denis Kristak (INUITS)
+easyblock = 'PythonPackage'
+
+name = 'scib'
+version = '1.1.3'
+
+homepage = 'https://github.com/theislab/scib'
+description = "Benchmarking atlas-level data integration in single-cell genomics."
+
+toolchain = {'name': 'foss', 'version': '2021a'}
+
+sources = [SOURCE_TAR_GZ]
+checksums = ['2b59d7c291e99bd508b91d73ff07fc4961fded37b06089e4f19fc5ee9cc4e3f3']
+
+dependencies = [
+    ('Python', '3.9.5'),
+    ('SciPy-bundle', '2021.05'),
+    ('Seaborn', '0.11.2'),
+    ('numba', '0.53.1'),
+    ('scanpy', '1.8.1'),
+    ('h5py', '3.2.1'),
+    ('scikit-learn', '0.24.2'),
+    ('scikit-misc', '0.1.4'),
+    ('leidenalg', '0.8.7'),
+    ('umap-learn', '0.5.3'),
+    ('pydot', '1.4.2'),
+    ('igraph', '0.9.4'),
+    ('python-igraph', '0.9.6'),
+    ('Deprecated', '1.2.13'),
+]
+
+use_pip = True
+sanity_pip_check = True
+download_dep_fail = True
+
+preinstallopts = "sed -i 's|igraph>=0.10|python-igraph>=0.9.6|g' setup.cfg && "
+preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && "
+
+moduleclass = 'data'