From 46e80e221641dde1cf9c0bfc95d246b652e434ba Mon Sep 17 00:00:00 2001
From: qnater <quentin.nater@gmail.com>
Date: Wed, 25 Sep 2024 17:14:57 +0200
Subject: [PATCH] correction of the shap explainer and refactoring

---
 .github/workflows/pytest_shap_explainer.yml | 32 +++++++++++++++++++++
 .idea/workspace.xml                         |  9 +++---
 2 files changed, 36 insertions(+), 5 deletions(-)
 create mode 100644 .github/workflows/pytest_shap_explainer.yml

diff --git a/.github/workflows/pytest_shap_explainer.yml b/.github/workflows/pytest_shap_explainer.yml
new file mode 100644
index 0000000..d27ff93
--- /dev/null
+++ b/.github/workflows/pytest_shap_explainer.yml
@@ -0,0 +1,32 @@
+
+name: Pytest - ImputeGAP - SHAP - EXPLAINER - 8
+
+on:
+  push:
+  pull_request:
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v3
+      with:
+        lfs: true
+
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: '3.8'
+
+    - name: Install dependencies
+      run: |
+        sudo apt-get update
+        sudo apt-get install libmlpack-dev
+        sudo apt-get install libopenblas-dev
+        pip install -r requirements.txt
+        pip install mypy
+        pip install pytest
+
+    - name: Run pytest
+      run: python -m pytest ./tests/test_explainer.py
\ No newline at end of file
diff --git a/.idea/workspace.xml b/.idea/workspace.xml
index a5fc5c7..7ea6681 100644
--- a/.idea/workspace.xml
+++ b/.idea/workspace.xml
@@ -2,9 +2,8 @@
 <project version="4">
   <component name="ChangeListManager">
     <list default="true" id="d2565aa5-b0c7-4b53-9b23-84bd42c9e5d7" name="Changes" comment="">
+      <change afterPath="$PROJECT_DIR$/.github/workflows/pytest_shap_explainer.yml" afterDir="false" />
       <change beforePath="$PROJECT_DIR$/.idea/workspace.xml" beforeDir="false" afterPath="$PROJECT_DIR$/.idea/workspace.xml" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/imputegap/explainer/explainer.py" beforeDir="false" afterPath="$PROJECT_DIR$/imputegap/explainer/explainer.py" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/tests/assets/shap/chlorine_cdrec_shap_plot.png" beforeDir="false" afterPath="$PROJECT_DIR$/tests/assets/shap/chlorine_cdrec_shap_plot.png" afterDir="false" />
     </list>
     <option name="SHOW_DIALOG" value="false" />
     <option name="HIGHLIGHT_CONFLICTS" value="true" />
@@ -45,7 +44,7 @@
     "RunOnceActivity.OpenProjectViewOnStart": "true",
     "RunOnceActivity.ShowReadmeOnStart": "true",
     "WebServerToolWindowFactoryState": "false",
-    "last_opened_file_path": "C:/Users/nquen/switchdrive/MST_MasterThesis/imputegap/tests/algorithms/lib",
+    "last_opened_file_path": "C:/Users/nquen/switchdrive/MST_MasterThesis/imputegap/.github/workflows",
     "nodejs_package_manager_path": "npm",
     "settings.editor.selected.configurable": "com.jetbrains.python.configuration.PyActiveSdkModuleConfigurable",
     "vue.rearranger.settings.migration": "true"
@@ -53,11 +52,11 @@
 }]]></component>
   <component name="RecentsManager">
     <key name="CopyFile.RECENT_KEYS">
+      <recent name="C:\Users\nquen\switchdrive\MST_MasterThesis\imputegap\.github\workflows" />
       <recent name="C:\Users\nquen\switchdrive\MST_MasterThesis\imputegap\tests\algorithms\lib" />
       <recent name="C:\Users\nquen\switchdrive\MST_MasterThesis\imputegap\imputegap\algorithms\lib" />
       <recent name="C:\Users\nquen\switchdrive\MST_MasterThesis\imputegap\tests" />
       <recent name="C:\Users\nquen\switchdrive\MST_MasterThesis\imputegap\tests\assets\contamination" />
-      <recent name="C:\Users\nquen\switchdrive\MST_MasterThesis\imputegap\tests\assets\ground_truth" />
     </key>
     <key name="MoveFile.RECENT_KEYS">
       <recent name="C:\Users\nquen\switchdrive\MST_MasterThesis\imputegap\imputegap" />
@@ -192,7 +191,7 @@
       <workItem from="1727089360789" duration="542000" />
       <workItem from="1727089982123" duration="14843000" />
       <workItem from="1727176127889" duration="12502000" />
-      <workItem from="1727262161186" duration="12892000" />
+      <workItem from="1727262161186" duration="12976000" />
     </task>
     <servers />
   </component>