definition.yml

method:
  id: matcher
  name: MATCHER
  tool_id: matcher
  source: tool
  platform: Python
  url: https://github.com/jw156605/MATCHER
  license: MIT
  authors:
  - given: Joshua
    family: Welch
    email: jwelch@cs.unc.edu
    github: jw156605
  - given: Jan
    family: Prins
    email: prins@cs.unc.edu

manuscript:
  doi: 10.1186/s13059-017-1269-0
  google_scholar_cluster_id: '15188907290164515017'
  publication_date: '2017-06-24'

container:
  url: https://github.com/dynverse/ti_matcher
  docker: dynverse/ti_matcher

wrapper:
  type: linear_trajectory
  topology_inference: fixed
  trajectory_types: linear
  input_required: expression

parameters:
  - id: quantiles
    description: quantiles How many quantiles to use when computing warp functions
      (integer)
    type: integer
    default: 50
    distribution:
      type: uniform
      lower: 2
      upper: 500
  - id: method
    description: Gaussian process regression or linear interpolation? ("gp" or "linear)
    type: character
    values:
    - gp
    - linear
    default: linear