System.h

#include <vector>
#include <memory>
#include <fstream>

#include "Block.h"
#include "InputReader.h"

using namespace std;

class System
{
public:
  vector<shared_ptr<Block>> blocks;
  InputReader* inputReader;

  ofstream outFilePositions;
  ofstream outFileForce;
  ofstream outFileVelocity;
  ofstream outFilePusher;
  //ofstream outFileParameters;

  //Pointer made to hold data arrays
  // double* positions;
  // double* velocity;
  // double* force;

  System(InputReader* &input);
  ~System();

  void run();
  void init();

  int checkProgress(double time, double tStop, int percent,double curretenTime, double start);
  void writeArrayToFile(ofstream & outFile, double * array, int numBlocks);
  void pokeSide(double factor);

};