diff --git a/docs/downloading.rst b/docs/downloading.rst index 2bf6949..255a2e0 100644 --- a/docs/downloading.rst +++ b/docs/downloading.rst @@ -47,6 +47,25 @@ download the *summary file* of the ORCID Public Data File works on the compressed file; there is no need to expand it (it expands to about 0.5 TB). +PubMed data +~~~~~~~~~~~ + +You can populate a database with the data from the PubMed/MEDLINE database +from the National Library of Medicine (NLM). +The data are available from +`here `__. +You can also download the data from the FTP server which is documented in +`this readme file `__. +Publication data are overlapping with the Crossref dataset, +but the PubMed data contain additional information +such as MeSH terms and grants. +They also complement the Crossref data as for example some affiliations +are only available in the PubMed data. + +The shell script ``examples/common/fetch-pubmed.sh`` or the +``$(PUBMED_DIR)`` dependency of the ``examples/common/Makefile``, +which uses it, can be used to download all PubMed data. + USPTO data ~~~~~~~~~~ @@ -88,26 +107,6 @@ The shell script ``examples/common/fetch-uspto.sh`` or the ``$(USPTO_DIR)`` dependency of the ``examples/common/Makefile``, which uses it, can be used to download all USPTO data. -PubMed data -~~~~~~~~~~~ - -You can populate a database with the data from the PubMed/MEDLINE database -from the National Library of Medicine (NLM). -The data are available from -`here `__. -You can also download the data from the FTP server which is documented in -`this readme file `__. -Publication data are overlapping with the Crossref dataset, -but the PubMed data contain additional information -such as MeSH terms and grants. -They also complement the Crossref data as for example some affiliations -are only available in the PubMed data. - -The shell script ``examples/common/fetch-pubmed.sh`` or the -``$(PUBMED_DIR)`` dependency of the ``examples/common/Makefile``, -which uses it, can be used to download all PubMed data. - - Other data sources ~~~~~~~~~~~~~~~~~~