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modules.json
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{
"name": "nf-core/viralrecon",
"homePage": "https://github.com/nf-core/viralrecon",
"repos": {
"nf-core/modules": {
"abacas": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"artic/guppyplex": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"artic/minion": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"bandage/image": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"bcftools/consensus": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"bcftools/mpileup": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"bcftools/stats": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"bedtools/genomecov": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"bedtools/getfasta": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"bedtools/maskfasta": {
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},
"bedtools/merge": {
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},
"blast/blastn": {
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},
"blast/makeblastdb": {
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},
"bowtie2/align": {
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},
"bowtie2/build": {
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"cat/fastq": {
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},
"fastp": {
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},
"fastqc": {
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},
"gunzip": {
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},
"ivar/consensus": {
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},
"ivar/trim": {
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},
"ivar/variants": {
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},
"kraken2/kraken2": {
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"minia": {
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},
"mosdepth": {
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},
"nanoplot": {
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},
"nextclade": {
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},
"pangolin": {
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},
"picard/collectmultiplemetrics": {
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},
"picard/markduplicates": {
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},
"plasmidid": {
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},
"pycoqc": {
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},
"quast": {
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},
"samtools/flagstat": {
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},
"samtools/idxstats": {
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},
"samtools/index": {
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},
"samtools/mpileup": {
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},
"samtools/sort": {
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"samtools/stats": {
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"samtools/view": {
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"spades": {
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},
"tabix/bgzip": {
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},
"tabix/tabix": {
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},
"unicycler": {
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},
"untar": {
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}
}
}
}