DESCRIPTION

Package: myTAI
Type: Package
Title: Evolutionary Transcriptomics
Version: 2.0.0
Date: 2024-10-02
Authors@R: c(person("Hajk-Georg", "Drost",
                role = c("aut", "cre"),
                email = "hajk-georg.drost@tuebingen.mpg.de",
                comment = c(ORCID = "0000-0002-1567-306X")),
              person(given = "Jaruwatana Sodai", 
                family = "Lotharukpong", 
                role = c("aut", "ctb"), 
                email = "jaruwatana.lotharukpong@tuebingen.mpg.de", 
                comment = c(ORCID = "0000-0002-3475-0980")),
              person(given = "Nikola", 
                family = "Kalábová",
                role = c("aut", "ctb"), 
                email = "nikola@kalabova.eu", 
                comment = c(ORCID = "0009-0007-6384-8809")),
              person(given = "Kristian K",
                family = "Ullrich",
                role = c("aut", "ctb"),
                email = "ullrich@evolbio.mpg.de",
                comment = c(ORCID = "0000-0003-4308-9626")))
Description: Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest. 
VignetteBuilder: knitr
NeedsCompilation: yes
License: GPL-2
Depends:
    R (>= 3.1.1)
Imports:
    Rcpp,
    nortest (>= 1.0-2),
    fitdistrplus (>= 1.1-5),
    parallel (>= 3.1.1),
    foreach (>= 1.4.2),
    doParallel (>= 1.0.8),
    dplyr (>= 0.3.0),
    RColorBrewer (>= 1.1-2),
    methods (>= 3.1.1),
    graphics (>= 3.1.1),
    stats (>= 3.1.1),
    grDevices (>= 3.1.1),
    utils (>= 3.1.1),
    reshape2 (>= 1.4.1),
    ggplot2 (>= 1.0.1),
    readr (>= 0.2.2),
    tibble,
    scales,
    ggpubr,
    Matrix,
    DESeq2 (>= 1.29.15)
Suggests:
    knitr (>= 1.6),
    rmarkdown (>= 0.3.3),
    devtools (>= 1.6.1),
    testthat (>= 0.9.1),
    mgcv,
    Seurat,
    decor,
    RcppThread
LinkingTo: 
    RcppArmadillo,
    Rcpp,
    cpp11,
    RcppThread, 
    RcppEigen
URL: https://drostlab.github.io/myTAI/
BugReports: https://github.com/drostlab/myTAI/issues
RoxygenNote: 7.3.2
Encoding: UTF-8
SystemRequirements: C++