Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Suffix arrays for alignment #32

Open
acesnik opened this issue Oct 3, 2017 · 2 comments
Open

Suffix arrays for alignment #32

acesnik opened this issue Oct 3, 2017 · 2 comments

Comments

@acesnik
Copy link
Contributor

acesnik commented Oct 3, 2017

This is a wonderful library of functions for bioinformatic analysis. I'm excited to try it out!

Do you have any plans to implement an alignment algorithm similar to STAR, which uses suffix arrays for string searches?
@evolvedmicrobe
Copy link
Member

No plans at the present, but I am a huge fan of all algorithms from Gene Meyers, and I'm sure people would love to see that functionality if you had any interest in contributing it!

@jamesmhogan
Copy link

Definitely welcome that functionality if you are interested.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@evolvedmicrobe @jamesmhogan @acesnik