pytest-with-coverage.yml

name: PyTest with coverage conda

on:
  push:
    branches: [ '*' ]

jobs:
  pytest-with-coverage:
    permissions:
      contents: read
      pull-requests: write
    strategy:
      fail-fast: false
      matrix:
        python-version: [ '3.9', '3.10', '3.11', '3.12', '3.13' ]
    runs-on: 'ubuntu-latest'
    steps:
      - name: Checkout repository
        uses: actions/checkout@v3

      - name: Set up mamba environment
        uses: mamba-org/setup-micromamba@v1
        with:
          generate-run-shell: true
          environment-file: envs/environment-test.yml
          # environment caching does not play nicely with --editable installed packages
          cache-environment: false
          cache-downloads: true
          # persist downloads cache for 1 day
          cache-downloads-key: downloads-${{ steps.date.outputs.date }}
          create-args: >-
            python=${{ inputs.python-version }}

      - name: Test with pytest
        run: |
          pytest --cov=$GITHUB_WORKSPACE --cov-report=xml
        shell: micromamba-shell {0}

      - name: Upload coverage report to Codecov
        uses: codecov/codecov-action@v3
        with:
          file: ./coverage.xml
          flags: unittests