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TestFileIO.py
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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Fri Jan 19 23:45:56 2018
@author: dimitricoukos
"""
import unittest
import json
import DataTreatment
from DataTreatment import openJson, write
class SampleData(unittest.TestCase):
initial_input = {
"GLNLASEer": {
"N-octanoyl-DL-homoserine lactone": [],
"5-butyl-4-methyldihydro-2(3H)-furanone": [],
"gamma-undecanolactone": [
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "3.92",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "4.25",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "4.55",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "4.63",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "4.95",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "5.64",
"ecNumber": "3.1.1.25"
}
],
"gamma-dodecanolactone": [],
"N-(3-oxododecanoyl)-L-homoserine lactone": [
{
"wild-type": True,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "1.01",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "1.8",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "3",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "6.44",
"ecNumber": "3.1.1.25"
}
],
"nonanoic-1,5-lactone": [],
"gamma-dodecalactone": [],
"N-(3-oxodecanoyl)-L-homoserine lactone": [
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "0.19",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "0.6",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "3.96",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "4.52",
"ecNumber": "3.1.1.25"
}
],
"gamma-dodecanoic lactone": [
{
"organism": "Homo sapiens",
"turnoverNumber": "101",
"ecNumber": "3.1.1.25"
}
],
"gamma-heptalactone": [],
"undecanoic-gamma-lactone": [],
"N-(2-oxotetrahydrofuran-3-yl)pentanamide": [],
"N-octanoylhomoserine lactone": [],
"nonanoic-gamma-lactone": [
{
"wild-type": False,
"organism": "Sulfolobus islandicus",
"turnoverNumber": "2",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Sulfolobus islandicus",
"turnoverNumber": "3.1",
"ecNumber": "3.1.1.25"
}
],
"5-(thiobutyl)butyrolactone": [
{
"wild-type": False,
"organism": "Homo sapiens",
"turnoverNumber": "7.5",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Homo sapiens",
"turnoverNumber": "19.4",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Homo sapiens",
"turnoverNumber": "116",
"ecNumber": "3.1.1.25"
}
],
"N-hexanoylhomoserine lactone": [],
"N-(3-oxodecanoyl)-DL-homoserine lactone": [],
"delta-undecalactone": [],
"delta-dodecalactone": [],
"gamma-(S)-valerolactone": [],
"gamma-undecalactone": [],
"gamma-(R)-valerolactone": [],
"octanoyl-L-homoserine lactone": [],
"N-(3-oxododecanoyl)-DL-homoserine lactone": [],
"gamma-(S)-caprolactone": [],
"dodecanoic-1,5-lactone": [],
"gamma-nonanoic acid lactone": [],
"gamma-heptanolactone": [],
"Paraoxon": [
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "8.47",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "12.6",
"ecNumber": "3.1.1.25"
}
],
"dodecanoic-gamma-lactone": [],
"undecanoic-1,5-lactone": [],
"gamma-heptanolide": [
{
"organism": "Sulfolobus acidocaldarius",
"turnoverNumber": "10.25",
"ecNumber": "3.1.1.25"
},
{
"organism": "Homo sapiens",
"turnoverNumber": "34",
"ecNumber": "3.1.1.25"
}
],
"delta-undecanolactone": [
{
"wild-type": True,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "12.65",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "44.8",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "56.8",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "58",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "66.5",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "71.2",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "93.3",
"ecNumber": "3.1.1.25"
}
],
"gamma-nonalactone": [
{
"wild-type": True,
"organism": "Sulfolobus solfataricus",
"turnoverNumber": "5.54",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Homo sapiens",
"turnoverNumber": "5.57",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Homo sapiens",
"turnoverNumber": "31",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Vulcanisaeta moutnovskia",
"turnoverNumber": "44.49",
"ecNumber": "3.1.1.25"
}
],
"N-(3-oxohexanoyl)-L-homoserine lactone": [],
"N-(3-oxooctanoyl)-L-homoserine lactone": [],
"3-oxo-octanoyl-L-homoserine lactone": [],
"gamma-dodecanoic acid lactone": [],
"gamma-(R)-caprolactone": [],
"4-methoxy phenyl acetate": [],
"epsilon-caprolactone": [
{
"wild-type": True,
"organism": "Sulfolobus islandicus",
"turnoverNumber": "7.27",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Sulfolobus acidocaldarius",
"turnoverNumber": "15.04",
"ecNumber": "3.1.1.25"
}
],
"Gamma-caprolactone": [
{
"wild-type": False,
"organism": "Homo sapiens",
"turnoverNumber": "25",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Homo sapiens",
"turnoverNumber": "44",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Homo sapiens",
"turnoverNumber": "44",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Vulcanisaeta moutnovskia",
"turnoverNumber": "112.3",
"ecNumber": "3.1.1.25"
}
],
"gamma-butyrolactone": [
{
"wild-type": True,
"organism": "Sulfolobus islandicus",
"turnoverNumber": "5.75",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Homo sapiens",
"turnoverNumber": "111",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Homo sapiens",
"turnoverNumber": "111",
"ecNumber": "3.1.1.25"
}
],
"delta-valerolactone": [
{
"wild-type": False,
"organism": "Homo sapiens",
"turnoverNumber": "0.5",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Homo sapiens",
"turnoverNumber": "0.9",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Homo sapiens",
"turnoverNumber": "29.8",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Homo sapiens",
"turnoverNumber": "40",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Homo sapiens",
"turnoverNumber": "69.4",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Homo sapiens",
"turnoverNumber": "94",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Homo sapiens",
"turnoverNumber": "156",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Homo sapiens",
"turnoverNumber": "210",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Homo sapiens",
"turnoverNumber": "210",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Homo sapiens",
"turnoverNumber": "210",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Homo sapiens",
"turnoverNumber": "632",
"ecNumber": "3.1.1.25"
}
],
"gamma-undecanoiclactone": [],
"9-oxo-N-(2-oxotetrahydrofuran-3-yl)undecanamide": [],
"N-(3-oxooctanoyl)-DL-homoserine lactone": [
{
"wild-type": False,
"organism": "Sulfolobus islandicus",
"turnoverNumber": "0.92",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus islandicus",
"turnoverNumber": "0.97",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Sulfolobus islandicus",
"turnoverNumber": "4.1",
"ecNumber": "3.1.1.25"
}
],
"N-dodecanoylhomoserine lactone": [],
"nonanoic-delta-lactone": [],
"7-oxo-N-(2-oxotetrahydrofuran-3-yl)nonanamide": [],
"dodecanoic-delta-lactone": [],
"dihydrocoumarin": [
{
"organism": "Homo sapiens",
"turnoverNumber": "152",
"ecNumber": "3.1.1.25"
}
],
"N-dodecanoyl-DL-homoserine lactone": [],
"dodecanoic-1,4-lactone": [],
"gamma-undecanoic acid lactone": [],
"delta-nonalactone": [
{
"organism": "Homo sapiens",
"turnoverNumber": "48",
"ecNumber": "3.1.1.25"
},
{
"organism": "Vulcanisaeta moutnovskia",
"turnoverNumber": "88.91",
"ecNumber": "3.1.1.25"
}
],
"undecanoic-1,4-lactone": [],
"pantoyl lactone": [],
"nonanoic-1,4-lactone": [],
"N-(3-oxohexanoyl)homoserine lactone": [],
"undecanoic-delta-lactone": [
{
"wild-type": False,
"organism": "Sulfolobus islandicus",
"turnoverNumber": "12.9",
"ecNumber": "3.1.1.25"
},
{
"wild-type": False,
"organism": "Sulfolobus islandicus",
"turnoverNumber": "14.1",
"ecNumber": "3.1.1.25"
},
{
"wild-type": True,
"organism": "Sulfolobus islandicus",
"turnoverNumber": "17.65",
"ecNumber": "3.1.1.25"
}
],
"3-oxo-decanoyl-L-homoserine lactone": [],
"N-(3-oxooctanoyl)homoserine lactone": []
},
"CYSTS": {
"L-Ser": [],
"homocysteine": [
{
"wild-type": True,
"organism": "Homo sapiens",
"turnoverNumber": "6.2",
"ecNumber": "4.2.1.22"
},
{
"wild-type": True,
"organism": "Saccharomyces cerevisiae",
"turnoverNumber": "7.38",
"ecNumber": "4.2.1.22"
},
{
"wild-type": False,
"organism": "Homo sapiens",
"turnoverNumber": "15.5",
"ecNumber": "4.2.1.22"
},
{
"wild-type": False,
"organism": "Homo sapiens",
"turnoverNumber": "32.1",
"ecNumber": "4.2.1.22"
},
{
"wild-type": True,
"organism": "Homo sapiens",
"turnoverNumber": "34",
"ecNumber": "4.2.1.22"
}
],
"L-homocysteine": [
{
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