diff --git a/strkit/call/__init__.py b/strkit/call/__init__.py index 90bc31a..66f2ad9 100644 --- a/strkit/call/__init__.py +++ b/strkit/call/__init__.py @@ -1,7 +1,7 @@ from __future__ import annotations from .allele import call_alleles -from .caller import call_sample +from .call_sample import call_sample __all__ = [ "call_alleles", diff --git a/strkit/call/caller/align_matrix.py b/strkit/call/align_matrix.py similarity index 100% rename from strkit/call/caller/align_matrix.py rename to strkit/call/align_matrix.py diff --git a/strkit/call/caller/call_locus.py b/strkit/call/call_locus.py similarity index 100% rename from strkit/call/caller/call_locus.py rename to strkit/call/call_locus.py diff --git a/strkit/call/caller/call_sample.py b/strkit/call/call_sample.py similarity index 100% rename from strkit/call/caller/call_sample.py rename to strkit/call/call_sample.py diff --git a/strkit/call/caller/__init__.py b/strkit/call/caller/__init__.py deleted file mode 100644 index 743518d..0000000 --- a/strkit/call/caller/__init__.py +++ /dev/null @@ -1,5 +0,0 @@ -from .call_sample import call_sample - -__all__ = [ - "call_sample", -] diff --git a/strkit/call/caller/cigar.py b/strkit/call/cigar.py similarity index 100% rename from strkit/call/caller/cigar.py rename to strkit/call/cigar.py diff --git a/strkit/call/caller/non_daemonic_pool.py b/strkit/call/non_daemonic_pool.py similarity index 100% rename from strkit/call/caller/non_daemonic_pool.py rename to strkit/call/non_daemonic_pool.py diff --git a/strkit/call/caller/realign.py b/strkit/call/realign.py similarity index 100% rename from strkit/call/caller/realign.py rename to strkit/call/realign.py diff --git a/strkit/call/caller/repeats.py b/strkit/call/repeats.py similarity index 100% rename from strkit/call/caller/repeats.py rename to strkit/call/repeats.py diff --git a/strkit/call/caller/snvs.py b/strkit/call/snvs.py similarity index 100% rename from strkit/call/caller/snvs.py rename to strkit/call/snvs.py diff --git a/strkit/call/caller/types.py b/strkit/call/types.py similarity index 100% rename from strkit/call/caller/types.py rename to strkit/call/types.py diff --git a/strkit/call/caller/utils.py b/strkit/call/utils.py similarity index 100% rename from strkit/call/caller/utils.py rename to strkit/call/utils.py diff --git a/tests/test_caller_utils.py b/tests/test_caller_utils.py index 33966c7..aa83e29 100644 --- a/tests/test_caller_utils.py +++ b/tests/test_caller_utils.py @@ -1,4 +1,4 @@ -from strkit.call.caller.utils import find_pair_by_ref_pos_py, find_pair_by_ref_pos, normalize_contig, round_to_base_pos +from strkit.call.utils import find_pair_by_ref_pos_py, find_pair_by_ref_pos, normalize_contig, round_to_base_pos # A A T T C G C C C C A A A A A C PAIRS = [(0, 1000), (1, 1001), (2, 1003), (3, 1004), (4, 1005), (5, 1006), (6, 1008), (7, 1009)]