From 51e37c3a49fd4130f9a6e8959e415d3a8296cd7b Mon Sep 17 00:00:00 2001 From: David Lougheed Date: Mon, 10 Jun 2024 08:53:36 -0400 Subject: [PATCH] chore(call): log wording --- strkit/call/call_locus.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/strkit/call/call_locus.py b/strkit/call/call_locus.py index fb828c1..ff4d30a 100644 --- a/strkit/call/call_locus.py +++ b/strkit/call/call_locus.py @@ -948,7 +948,8 @@ def call_locus( proc.join() except queue.Empty: logger_.warning( - f"{locus_log_str} - experienced timeout while re-aligning read {rn}. Reverting to BAM alignment.") + f"{locus_log_str} - experienced timeout while re-aligning read {rn}. Reverting to initial " + f"alignment.") proc.terminate() time.sleep(0.1) # wait a little for the process to terminate finally: