Add license to bedfiles

[khoroshevskyi]

• Add table of licenses.
• Connect each bed record to a particular license.
• Show this information in the BED metadata for each record. (ui)

[khoroshevskyi]

License table should look like:
name, url
cc-by-4.0, https://creativecommons.org/licenses/by/4.0/
cc-by-nc-4.0, https://creativecommons.org/licenses/by-nc/4.0/

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or : https://github.com/EBISPOT/DUO

[khoroshevskyi]

To find DUO license use this website: https://www.ebi.ac.uk/ols4/ontologies/duo

Have few questions:

• How to get metadata (annotation) about each class/ data use condition? (by using owlready2 (python library))
• How to restrict it in bedbase?

https://github.com/EBISPOT/DUO/blob/master/duo.csv

[nsheff]

just do this:

• allow us to annotate each bed file with one of these terms: https://github.com/EBISPOT/DUO/blob/master/duo.csv
• display which term is connected, on each bed and bedset page
• flag stuff from GEO as GRU by default; so everything will just be GRU for now.
• make bedboss able to use a different one, from an input pep that drives it.

[khoroshevskyi]

For db migration use this:

-- ALTER TABLE licenses
-- ADD CONSTRAINT unique_license_id UNIQUE (id);

ALTER TABLE bed
ADD COLUMN license_id CHARACTER VARYING;

ALTER TABLE bed
ADD CONSTRAINT fk_licese
FOREIGN KEY (license_id) REFERENCES licenses(id);