diff --git a/.copier-answers.yml b/.copier-answers.yml new file mode 100644 index 00000000..db15b048 --- /dev/null +++ b/.copier-answers.yml @@ -0,0 +1,12 @@ +# This file is managed by Copier; DO NOT EDIT OR REMOVE. +_commit: v0.2.1 +_src_path: https://github.com/quantco/copier-template-python-open-source +add_autobump_workflow: true +author_email: minimalkv@uwekorn.com +author_name: Data Engineering Collective +github_url: https://github.com/data-engineering-collective/minimalkv +github_user: xhochy +minimal_python_version: py39 +project_short_description: A key-value storage for binary data, support many backends. +project_slug: minimalkv +use_devcontainer: false diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 00000000..18f6c7e9 --- /dev/null +++ b/.gitattributes @@ -0,0 +1 @@ +pixi.lock linguist-language=YAML linguist-generated=true diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md index f0d3248e..cc5d3154 100644 --- a/.github/PULL_REQUEST_TEMPLATE.md +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -2,5 +2,7 @@ Thank you for pull request. Below are a few things we ask you kindly to self-check before getting a review. Remove checks that are not relevant. --> + Checklist -* [ ] Added a `docs/changes.rst` entry + +- [ ] Added a `docs/changes.rst` entry diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml new file mode 100644 index 00000000..762111cd --- /dev/null +++ b/.github/workflows/build.yml @@ -0,0 +1,54 @@ +name: Build +on: + pull_request: + push: + branches: + - main + tags: + - "*" + +jobs: + build: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@d632683dd7b4114ad314bca15554477dd762a938 # v4.2.0 + with: + fetch-depth: 0 + - name: Set up pixi + uses: prefix-dev/setup-pixi@ba3bb36eb2066252b2363392b7739741bb777659 # v0.8.1 + with: + environments: build + - name: Build project + run: pixi run -e build build-wheel + - name: Check package + run: pixi run -e build check-wheel + - name: Upload package + uses: actions/upload-artifact@50769540e7f4bd5e21e526ee35c689e35e0d6874 # v4.4.0 + with: + name: artifact + path: dist/* + + release: + name: Publish package + if: startsWith(github.ref, 'refs/tags/') + needs: [build] + runs-on: ubuntu-latest + permissions: + id-token: write + environment: pypi + steps: + - uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4.1.8 + with: + name: artifact + path: dist + - name: Publish package on TestPyPi + uses: pypa/gh-action-pypi-publish@f7600683efdcb7656dec5b29656edb7bc586e597 # v1.10.3 + with: + repository-url: https://test.pypi.org/legacy/ + user: __token__ + password: ${{ secrets.pypi_password }} + - name: Publish package on PyPi + uses: pypa/gh-action-pypi-publish@f7600683efdcb7656dec5b29656edb7bc586e597 # v1.10.3 + with: + user: __token__ + password: ${{ secrets.pypi_password }} diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index df3ae289..7c3ba384 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -1,9 +1,26 @@ name: CI on: [push, pull_request, workflow_dispatch] +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true + jobs: + pre-commit: + timeout-minutes: 30 + runs-on: ubuntu-latest + steps: + - name: Checkout branch + uses: actions/checkout@d632683dd7b4114ad314bca15554477dd762a938 # v4.2.0 + - name: Set up pixi + uses: prefix-dev/setup-pixi@ba3bb36eb2066252b2363392b7739741bb777659 # v0.8.1 + with: + environments: default lint + - name: pre-commit + run: pixi run pre-commit-run --color=always --show-diff-on-failure + unittest: - name: Unit tests - ${{ matrix.PYTHON_VERSION }} + name: Unit tests - ${{ matrix.environment }} runs-on: ubuntu-latest permissions: contents: "read" @@ -11,7 +28,11 @@ jobs: strategy: fail-fast: false matrix: - PYTHON_VERSION: ["3.8", "3.9", "3.10", "3.11", "3.12"] + environment: + - py39 + - py310 + - py311 + - py312 services: postgres: image: postgres:11 @@ -19,17 +40,15 @@ jobs: POSTGRES_DB: minimalkv_test POSTGRES_PASSWORD: minimalkv_test POSTGRES_USER: minimalkv_test - env: - SIMPLEKV_CI: 1 steps: - - uses: actions/checkout@v4 - - name: Set up Conda env - uses: mamba-org/setup-micromamba@068f1ab4b37ed9b3d9f73da7db90a0cda0a48d29 + - name: Checkout branch + uses: actions/checkout@d632683dd7b4114ad314bca15554477dd762a938 # v4.2.0 + - name: Set up pixi + uses: prefix-dev/setup-pixi@ba3bb36eb2066252b2363392b7739741bb777659 # v0.8.1 with: - environment-file: environment.yml - cache-environment: true - create-args: >- - python=${{ matrix.PYTHON_VERSION }} + environments: ${{ matrix.environment }} + - name: Install repository + run: pixi run -e ${{ matrix.environment }} postinstall # For some reason we can't check for $ACTIONS_ID_TOKEN_REQUEST_URL # from the `if` condition in the next step. # See this commit: https://github.com/simonbohnen/minimalkv/commit/775c74c1b1248245d66c2be69476e18acda9f2fe @@ -57,62 +76,42 @@ jobs: with: role-to-assume: arn:aws:iam::211125346859:role/github-poweruser aws-region: eu-central-1 - # We set an env variable according to the result of the check - # to only allow skipping of aws integration test when in fork. - # When being run in the base repo, the aws integration test should always be executed. + + # This is a work around as long as S3FSStore has the side effect of setting env variables + # to provide authentication. This can safely be removed as soon as this side effect is gone - name: Remap AWS Environment Variables if: steps.check-id-token.outcome == 'success' run: | echo "ACCESS_KEY_ID=${{ env.AWS_ACCESS_KEY_ID }}" >> $GITHUB_ENV echo "SECRET_ACCESS_KEY=${{ env.AWS_SECRET_ACCESS_KEY }}" >> $GITHUB_ENV echo "SESSION_TOKEN=${{ env.AWS_SESSION_TOKEN }}" >> $GITHUB_ENV - # This is a work around as long as S3FSStore has the side effect of setting env variables - # to provide authentication. This can savely be removed as soon as this side effect is gone + # We set an env variable according to the result of the check + # to only allow skipping of aws integration test when in fork. + # When being run in the base repo, the aws integration test should always be executed. - name: Check whether the workflow runs in a fork run: echo "CI_IN_FORK=${{ github.event.pull_request && github.repository != github.event.pull_request.head.repo.full_name }}" >> $GITHUB_ENV - name: "Run setup: install package & start docker container" shell: bash -x -l {0} run: | - pip install --no-deps . - docker-compose up -d + pixi run docker compose up -d while ! docker exec mysql mysqladmin status -h 127.0.0.1 -u minimalkv_test --password=minimalkv_test; \ do sleep 3; done - - name: Run the unittests - shell: bash -l {0} - run: | - pytest -n auto --dist loadfile -rs --cov=minimalkv --cov-report=xml - - name: Build the package - shell: bash -x -l {0} - run: | - python -m build - - name: Typecheck the codebase - shell: bash -x -l {0} - run: mypy minimalkv - - name: Publish package - if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') && matrix.PYTHON_VERSION == '3.10' - uses: pypa/gh-action-pypi-publish@v1.12.3 - with: - user: __token__ - password: ${{ secrets.pypi_password }} + - name: Run pytest + run: pixi run -e ${{ matrix.environment }} pytest -n auto --dist loadfile -rs --cov=minimalkv --cov-report=xml --color=yes - uses: codecov/codecov-action@v5 with: file: ./coverage.xml - pre-commit-checks: - name: "Pre-commit checks" + mypy: runs-on: ubuntu-latest - env: - PRE_COMMIT_USE_MICROMAMBA: 1 steps: - name: Checkout branch - uses: actions/checkout@v4 - - name: Set up micromamba - uses: mamba-org/setup-micromamba@068f1ab4b37ed9b3d9f73da7db90a0cda0a48d29 - - name: Add micromamba to GITHUB_PATH - run: echo "${HOME}/micromamba-bin" >> "$GITHUB_PATH" - - name: Install Python 3.10 - uses: actions/setup-python@v5 + uses: actions/checkout@d632683dd7b4114ad314bca15554477dd762a938 # v4.2.0 + - name: Set up pixi + uses: prefix-dev/setup-pixi@ba3bb36eb2066252b2363392b7739741bb777659 # v0.8.1 with: - python-version: "3.10" - - name: Run pre-commit checks - uses: pre-commit/action@v3.0.1 + environments: py39 # as in pyproject.toml + - name: Install repository + run: pixi run -e py39 postinstall + - name: Run mypy + run: pixi run -e py39 mypy minimalkv diff --git a/.github/workflows/codeql-analysis.yml b/.github/workflows/codeql-analysis.yml index 1460ce97..8d19a00e 100644 --- a/.github/workflows/codeql-analysis.yml +++ b/.github/workflows/codeql-analysis.yml @@ -13,12 +13,12 @@ name: "CodeQL" on: push: - branches: [ main ] + branches: [main] pull_request: # The branches below must be a subset of the branches above - branches: [ main ] + branches: [main] schedule: - - cron: '31 21 * * 1' + - cron: "31 21 * * 1" jobs: analyze: @@ -28,21 +28,21 @@ jobs: strategy: fail-fast: false matrix: - language: [ 'python' ] + language: ["python"] steps: - - name: Checkout repository - uses: actions/checkout@v4 + - name: Checkout repository + uses: actions/checkout@v4 - # Initializes the CodeQL tools for scanning. - - name: Initialize CodeQL - uses: github/codeql-action/init@v3 - with: - languages: ${{ matrix.language }} - # If you wish to specify custom queries, you can do so here or in a config file. - # By default, queries listed here will override any specified in a config file. - # Prefix the list here with "+" to use these queries and those in the config file. - # queries: ./path/to/local/query, your-org/your-repo/queries@main + # Initializes the CodeQL tools for scanning. + - name: Initialize CodeQL + uses: github/codeql-action/init@v3 + with: + languages: ${{ matrix.language }} + # If you wish to specify custom queries, you can do so here or in a config file. + # By default, queries listed here will override any specified in a config file. + # Prefix the list here with "+" to use these queries and those in the config file. + # queries: ./path/to/local/query, your-org/your-repo/queries@main - - name: Perform CodeQL Analysis - uses: github/codeql-action/analyze@v3 + - name: Perform CodeQL Analysis + uses: github/codeql-action/analyze@v3 diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml index 409727bb..1c1a96c5 100644 --- a/.github/workflows/codeql.yml +++ b/.github/workflows/codeql.yml @@ -14,12 +14,12 @@ name: "CodeQL" on: workflow_dispatch: push: - branches: [ "main" ] + branches: ["main"] pull_request: # The branches below must be a subset of the branches above - branches: [ "main" ] + branches: ["main"] schedule: - - cron: '25 17 * * 5' + - cron: "25 17 * * 5" jobs: analyze: @@ -33,43 +33,42 @@ jobs: strategy: fail-fast: false matrix: - language: [ 'python' ] + language: ["python"] # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ] # Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support steps: - - name: Checkout repository - uses: actions/checkout@v4 + - name: Checkout repository + uses: actions/checkout@v4 - # Initializes the CodeQL tools for scanning. - - name: Initialize CodeQL - uses: github/codeql-action/init@v3 - with: - languages: ${{ matrix.language }} - # If you wish to specify custom queries, you can do so here or in a config file. - # By default, queries listed here will override any specified in a config file. - # Prefix the list here with "+" to use these queries and those in the config file. + # Initializes the CodeQL tools for scanning. + - name: Initialize CodeQL + uses: github/codeql-action/init@v3 + with: + languages: ${{ matrix.language }} + # If you wish to specify custom queries, you can do so here or in a config file. + # By default, queries listed here will override any specified in a config file. + # Prefix the list here with "+" to use these queries and those in the config file. - # Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs - # queries: security-extended,security-and-quality + # Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs + # queries: security-extended,security-and-quality + # Autobuild attempts to build any compiled languages (C/C++, C#, Go, or Java). + # If this step fails, then you should remove it and run the build manually (see below) + - name: Autobuild + uses: github/codeql-action/autobuild@v3 - # Autobuild attempts to build any compiled languages (C/C++, C#, Go, or Java). - # If this step fails, then you should remove it and run the build manually (see below) - - name: Autobuild - uses: github/codeql-action/autobuild@v3 + # ℹī¸ Command-line programs to run using the OS shell. + # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun - # ℹī¸ Command-line programs to run using the OS shell. - # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun + # If the Autobuild fails above, remove it and uncomment the following three lines. + # modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance. - # If the Autobuild fails above, remove it and uncomment the following three lines. - # modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance. + # - run: | + # echo "Run, Build Application using script" + # ./location_of_script_within_repo/buildscript.sh - # - run: | - # echo "Run, Build Application using script" - # ./location_of_script_within_repo/buildscript.sh - - - name: Perform CodeQL Analysis - uses: github/codeql-action/analyze@v3 - with: - category: "/language:${{matrix.language}}" + - name: Perform CodeQL Analysis + uses: github/codeql-action/analyze@v3 + with: + category: "/language:${{matrix.language}}" diff --git a/.github/workflows/pre-commit-autoupdate.yml b/.github/workflows/pre-commit-autoupdate.yml index 24c6c67f..42dc875b 100644 --- a/.github/workflows/pre-commit-autoupdate.yml +++ b/.github/workflows/pre-commit-autoupdate.yml @@ -18,22 +18,16 @@ jobs: # We need to checkout with SSH here to have actions run on the PR. with: ssh-key: ${{ secrets.SSH_PRIVATE_KEY }} - - name: Set up Conda env - uses: mamba-org/setup-micromamba@068f1ab4b37ed9b3d9f73da7db90a0cda0a48d29 + - name: Set up pixi + uses: prefix-dev/setup-pixi@ba3bb36eb2066252b2363392b7739741bb777659 # v0.8.1 with: - environment-name: pre-commit - create-args: >- - -c - conda-forge - pre-commit - mamba + environments: default lint - name: Update pre-commit hooks and run id: versions - env: - PRE_COMMIT_USE_MAMBA: 1 run: | - pre-commit autoupdate - pre-commit run -a || true + pixi run pre-commit-update + pixi run pre-commit-run --color=always --show-diff-on-failure || true + - uses: peter-evans/create-pull-request@5e914681df9dc83aa4e4905692ca88beb2f9e91f with: commit-message: "Auto-update pre-commit hooks" diff --git a/.github/workflows/update-lockfiles.yml b/.github/workflows/update-lockfiles.yml new file mode 100644 index 00000000..a2d04c56 --- /dev/null +++ b/.github/workflows/update-lockfiles.yml @@ -0,0 +1,34 @@ +name: Update lockfiles +permissions: + contents: write + pull-requests: write + +on: + workflow_dispatch: + schedule: + - cron: 0 5 1 * * + +jobs: + pixi-update: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@d632683dd7b4114ad314bca15554477dd762a938 # v4.2.0 + - name: Set up pixi + uses: prefix-dev/setup-pixi@ba3bb36eb2066252b2363392b7739741bb777659 # v0.8.1 + with: + run-install: false + - name: Update lockfiles + run: | + pixi update --json --no-install | pixi exec pixi-diff-to-markdown >> diff.md + - name: Create pull request + uses: peter-evans/create-pull-request@5e914681df9dc83aa4e4905692ca88beb2f9e91f # v7.0.5 + with: + token: ${{ secrets.GITHUB_TOKEN }} + commit-message: Update pixi lockfile + title: Update pixi lockfile + body-path: diff.md + branch: update-pixi + base: main + labels: pixi + delete-branch: true + add-paths: pixi.lock diff --git a/.gitignore b/.gitignore index fa358d22..efb8dbac 100644 --- a/.gitignore +++ b/.gitignore @@ -114,3 +114,6 @@ old/ # Exploratory code exploration_scripts/ + +# Pixi +.pixi diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index de61489f..70923e91 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,25 +1,70 @@ +exclude: ^(\.copier-answers\.yml)|.pixi$ repos: - # Run ruff first because autofix behaviour is enabled - - repo: https://github.com/Quantco/pre-commit-mirrors-ruff - rev: "0.8.0" - hooks: - - id: ruff-conda - - id: ruff-format-conda - - repo: https://github.com/Quantco/pre-commit-mirrors-mypy - rev: "1.13.0" - hooks: - - id: mypy-conda - additional_dependencies: - - -c - - conda-forge - - types-mock - - types-setuptools - - types-redis - - types-boto - - boto3-stubs - - repo: https://github.com/Quantco/pre-commit-mirrors-pyupgrade - rev: 3.19.0 - hooks: - - id: pyupgrade-conda - args: - - --py38-plus + - repo: local + hooks: + # ensure pixi environments are up to date + # workaround for https://github.com/prefix-dev/pixi/issues/1482 + - id: pixi-install + name: pixi-install + entry: pixi install -e default -e lint + language: system + always_run: true + require_serial: true + pass_filenames: false + # ruff + - id: ruff + name: ruff + entry: pixi run -e lint ruff check --fix --exit-non-zero-on-fix --force-exclude + language: system + types_or: [python, pyi] + require_serial: true + - id: ruff-format + name: ruff-format + entry: pixi run -e lint ruff format --force-exclude + language: system + types_or: [python, pyi] + require_serial: true + # mypy + - id: mypy + name: mypy + entry: pixi run -e default mypy + language: system + types: [python] + require_serial: true + # prettier + - id: prettier + name: prettier + entry: pixi run -e lint prettier --write --list-different --ignore-unknown + language: system + types: [text] + files: \.(md|yml|yaml)$ + # taplo + - id: taplo + name: taplo + entry: pixi run -e lint taplo format + language: system + types: [toml] + # pre-commit-hooks + - id: trailing-whitespace-fixer + name: trailing-whitespace-fixer + entry: pixi run -e lint trailing-whitespace-fixer + language: system + types: [text] + - id: end-of-file-fixer + name: end-of-file-fixer + entry: pixi run -e lint end-of-file-fixer + language: system + types: [text] + - id: check-merge-conflict + name: check-merge-conflict + entry: pixi run -e lint check-merge-conflict --assume-in-merge + language: system + exclude_types: + - rst + # typos + - id: typos + name: typos + entry: pixi run -e lint typos --force-exclude + language: system + types: [text] + require_serial: true diff --git a/.prettierrc b/.prettierrc new file mode 100644 index 00000000..478cc536 --- /dev/null +++ b/.prettierrc @@ -0,0 +1,7 @@ +{ + "singleQuote": false, + "bracketSpacing": true, + "printWidth": 200, + "endOfLine": "auto", + "tabWidth": 2 +} diff --git a/.readthedocs.yml b/.readthedocs.yml index 4a018c33..70c56087 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -1,14 +1,12 @@ version: 2 - build: - os: "ubuntu-20.04" + os: ubuntu-20.04 tools: - python: "mambaforge-4.10" - -conda: - environment: environment.yml - -python: - install: - - method: pip - path: . + python: mambaforge-latest + commands: + - mamba install -c conda-forge -c nodefaults pixi + - pixi run -e docs postinstall + - pixi run -e docs docs + - pixi run -e docs readthedocs +formats: + - pdf diff --git a/LICENSE b/LICENSE index b5584059..13081dc5 100644 --- a/LICENSE +++ b/LICENSE @@ -44,7 +44,7 @@ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER --- +-- The original storefact source had the following license: Copyright (c) 2015-2017, Blue Yonder GmbH diff --git a/README.md b/README.md new file mode 100644 index 00000000..841a3e84 --- /dev/null +++ b/README.md @@ -0,0 +1,45 @@ +# minimalkv + +[![CI](https://img.shields.io/github/actions/workflow/status/data-engineering-collective/minimalkv/ci.yml?style=flat-square&branch=main)](https://github.com/data-engineering-collective/minimalkv/actions/workflows/ci.yml) +[![conda-forge](https://img.shields.io/conda/vn/conda-forge/minimalkv?logoColor=white&logo=conda-forge&style=flat-square)](https://prefix.dev/channels/conda-forge/packages/minimalkv) +[![pypi-version](https://img.shields.io/pypi/v/minimalkv.svg?logo=pypi&logoColor=white&style=flat-square)](https://pypi.org/project/minimalkv) +[![python-version](https://img.shields.io/pypi/pyversions/minimalkv?logoColor=white&logo=python&style=flat-square)](https://pypi.org/project/minimalkv) +[![Documentation Status](https://readthedocs.org/projects/minimalkv/badge/?version=stable)](https://minimalkv.readthedocs.io/en/stable/?badge=stable) +[![codecov.io](https://codecov.io/github/data-engineering-collective/minimalkv/coverage.svg?branch=main)](https://codecov.io/github/data-engineering-collective/minimalkv) +![PyPI - License](https://img.shields.io/pypi/l/minimalkv) + +_minimalkv_ is an API for very basic key-value stores used for small, frequently +accessed data or large binary blobs. Its basic interface is easy to implement +and it supports a number of backends, including the filesystem, SQLAlchemy, +MongoDB, Redis and Amazon S3/Google Storage. + +## Installation + +This project is managed by [pixi](https://pixi.sh). +You can install the package in development mode using: + +```bash +git clone https://github.com/data-engineering-collective/minimalkv +cd minimalkv + +pixi run pre-commit-install +pixi run postinstall +pixi run test +``` + +Minimalkv is also [available on PyPI](http://pypi.python.org/pypi/minimalkv/) and +can be installed through `pip`: + +```bash +pip install minimalkv +``` + +## Documentation + +The documentation for minimalkv is available at +[https://minimalkv.readthedocs.io](https://minimalkv.readthedocs.io) + +## License + +minimalkv is licensed under the terms of the [BSD-3-Clause](https://opensource.org/license/bsd-3-clause) +license. diff --git a/README.rst b/README.rst deleted file mode 100644 index a1064cb3..00000000 --- a/README.rst +++ /dev/null @@ -1,28 +0,0 @@ -minimal key-value storage api -============================= - -*minimalkv* is an API for very basic key-value stores used for small, frequently -accessed data or large binary blobs. Its basic interface is easy to implement -and it supports a number of backends, including the filesystem, SQLAlchemy, -MongoDB, Redis and Amazon S3/Google Storage. - -Installation ------------- -minimalkv is `available on PyPI `_ and -can be installed through `pip `_:: - - pip install minimalkv - -or via ``conda`` on `conda-forge `_:: - - conda install -c conda-forge minimalkv - -Documentation -------------- -The documentation for minimalkv is available at -https://minimalkv.readthedocs.io. - -License -------- -minimalkv is licensed under the terms of the `BSD-3-Clause -`_ license. diff --git a/docker-compose.yml b/docker-compose.yml index 81ef0e86..1a5a6dd7 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -3,7 +3,7 @@ services: image: fsouza/fake-gcs-server container_name: fake-gcs-server ports: - - 4443:4443 + - 4443:4443 command: -scheme http azure: image: mcr.microsoft.com/azure-storage/azurite @@ -18,7 +18,7 @@ services: container_name: minio ports: - 9000:9000 - - 9001:9001 # Debugging over Web GUI if needed + - 9001:9001 # Debugging over Web GUI if needed environment: MINIO_ACCESS_KEY: minio MINIO_SECRET_KEY: miniostorage @@ -26,17 +26,17 @@ services: image: mongo container_name: mongodb ports: - - 27017:27017 + - 27017:27017 redis: image: redis container_name: redis ports: - - 6379:6379 + - 6379:6379 postgres: image: postgres container_name: postgreSQL ports: - - 5432:5432 + - 5432:5432 environment: POSTGRES_USER: minimalkv_test POSTGRES_PASSWORD: minimalkv_test diff --git a/docs/boto.rst b/docs/boto.rst index 28ceb4f8..f0a8d824 100644 --- a/docs/boto.rst +++ b/docs/boto.rst @@ -73,7 +73,7 @@ The unit tests for S3 will be run by travis against a local minio instance, emul Constructs a new boto based backend. :param bucket: An instance of :class:`boto.s3.bucket.Bucket`, - :class:`boto.gs.bucket.Bucket` or similiar. + :class:`boto.gs.bucket.Bucket` or similar. :param prefix: A string that will transparently prefixed to all handled keys. :param url_valid_time=0: When using diff --git a/docs/changes.rst b/docs/changes.rst index 44ec8e2f..d6d2484e 100644 --- a/docs/changes.rst +++ b/docs/changes.rst @@ -1,12 +1,17 @@ Changelog ********* +1.9.2 +===== +* Port setup to use the OSS QuantCo copier template (`copier template https://github.com/Quantco/copier-template-python-open-source`_) and (`pixi https://pixi.sh`_) as environment manager. + + 1.9.1 ===== * Add a real AWS integration test for S3FSStore * Add minio test for S3FSStore * `verify` url param that can be passed to url when creating a `[h]s3://` store now really controls SSL verifaction -* Refactor tests to not skip Boto3Store / S3FSStore tests anymore if `boto` is unavailible +* Refactor tests to not skip Boto3Store / S3FSStore tests anymore if `boto` is unavailable 1.9.0 ===== @@ -41,7 +46,7 @@ Changelog 1.8.1 ===== * Drop `pkg_resources` and use `importlib.metadata` to access package version string. -* Add missing `region_name` in `s3fs` store creation to set required location contraint +* Add missing `region_name` in `s3fs` store creation to set required location constraint during bucket creation. 1.8.0 @@ -184,7 +189,7 @@ Changelog * Use ``BlockBlobService.list_blob_names`` in ``minimalkv.net.azurestore.AzureBlockBlobStore.iter_keys``. This will only parse the names from Azure's XML response thus reducing CPU time - siginificantly for this function. + significantly for this function. * They ``.keys()`` method on Python 3 now returns a list. This is in line with the documentation and the behaviour on Python 2. It used to return a generator. diff --git a/docs/development.rst b/docs/development.rst index 7634e58b..c9423df7 100644 --- a/docs/development.rst +++ b/docs/development.rst @@ -18,4 +18,4 @@ To run the tests, setup the Python environment and execute: :: docker-compose up -d - pytest -n auto --dist loadfile \ No newline at end of file + pytest -n auto --dist loadfile diff --git a/environment.yml b/environment.yml deleted file mode 100644 index 02426f94..00000000 --- a/environment.yml +++ /dev/null @@ -1,40 +0,0 @@ -name: minimalkv -channels: - - conda-forge - - nodefaults -dependencies: - - azure-storage-blob - - boto - - boto3 - - dulwich - - fsspec - - gcsfs>=2022.10.0 - - s3fs>=2022.10.0 - - mock - - pip - - pre-commit - - psycopg2 - - pyarrow - - python-build - - pymongo - - pymysql - - pytest - - pytest-cov - - pytest-mock - - pytest-xdist - - python - - redis-py - - setuptools-scm - - six - - sphinx - - sqlalchemy - - uritools - # type checking dependencies - - mypy>=1.6.1 - - types-mock - - types-setuptools - - types-redis - - types-boto - - boto3-stubs - # Development dependencies - - docker-compose diff --git a/minimalkv/_constants.py b/minimalkv/_constants.py index d91bea55..9b9dc264 100644 --- a/minimalkv/_constants.py +++ b/minimalkv/_constants.py @@ -4,7 +4,7 @@ NOT_SET = "not_set" VALID_NON_NUM = r"""\`\!"#$%&'()+,-.<=>?@[]^_{}~""" -VALID_KEY_REGEXP = "^[%s0-9a-zA-Z]+$" % re.escape(VALID_NON_NUM) +VALID_KEY_REGEXP = f"^[{re.escape(VALID_NON_NUM)}0-9a-zA-Z]+$" """This regular expression tests if a key is valid. Allowed are all alphanumeric characters, as well as ``!"`#$%&'()+,-.<=>?@[]^_{}~``.""" @@ -12,7 +12,7 @@ """A compiled version of :data:`~minimalkv._constants.VALID_KEY_REGEXP`.""" VALID_NON_NUM_EXTENDED = VALID_NON_NUM + r"/ " -VALID_KEY_REGEXP_EXTENDED = "^[%s0-9a-zA-Z]+$" % re.escape(VALID_NON_NUM_EXTENDED) +VALID_KEY_REGEXP_EXTENDED = f"^[{re.escape(VALID_NON_NUM_EXTENDED)}0-9a-zA-Z]+$" """This regular expression tests if a key is valid when the extended keyspace mixin is used. Allowed are all alphanumeric characters, as well as ``!"`#$%&'()+,-.<=>?@[]^_{}~/``. and spaces""" VALID_KEY_RE_EXTENDED = re.compile(VALID_KEY_REGEXP_EXTENDED) diff --git a/minimalkv/_get_store.py b/minimalkv/_get_store.py index 8002c60d..3b258d44 100644 --- a/minimalkv/_get_store.py +++ b/minimalkv/_get_store.py @@ -1,5 +1,5 @@ from functools import reduce -from typing import Any, Dict, List, Optional, Type +from typing import Any, Optional from uritools import SplitResult, urisplit @@ -8,7 +8,7 @@ def get_store_from_url( - url: str, store_cls: Optional[Type[KeyValueStore]] = None + url: str, store_cls: Optional[type[KeyValueStore]] = None ) -> KeyValueStore: """Take a URL and return a minimalkv store according to the parameters in the URL. @@ -55,7 +55,7 @@ def get_store_from_url( from minimalkv._hstores import HS3FSStore from minimalkv.net.s3fsstore import S3FSStore - scheme_to_store: Dict[str, Type[KeyValueStore]] = { + scheme_to_store: dict[str, type[KeyValueStore]] = { "s3": S3FSStore, "hs3": HS3FSStore, "boto": HS3FSStore, @@ -81,7 +81,7 @@ def get_store_from_url( f"URL scheme {scheme} does not match store class {store_cls.__name__}" ) - query_listdict: Dict[str, List[str]] = parsed_url.getquerydict() + query_listdict: dict[str, list[str]] = parsed_url.getquerydict() # We will just use the last occurrence for each key query = {k: v[-1] for k, v in query_listdict.items()} @@ -95,7 +95,7 @@ def get_store_from_url( return wrapped_store -def _extract_wrappers(parsed_url: SplitResult) -> List[str]: +def _extract_wrappers(parsed_url: SplitResult) -> list[str]: """Extract wrappers from a parsed URL. Wrappers allow you to add additional functionality to a store, e.g. encryption. diff --git a/minimalkv/_key_value_store.py b/minimalkv/_key_value_store.py index 95596fab..6d7f7cab 100644 --- a/minimalkv/_key_value_store.py +++ b/minimalkv/_key_value_store.py @@ -1,13 +1,14 @@ +from collections.abc import Iterator from io import BytesIO from types import TracebackType -from typing import BinaryIO, Dict, Iterator, List, Optional, Type, Union +from typing import BinaryIO, Optional, Union from uritools import SplitResult from minimalkv._constants import VALID_KEY_RE from minimalkv._mixins import UrlMixin -# Only here to keep backwards-compatability +# Only here to keep backwards-compatibility key_type = str @@ -143,7 +144,7 @@ def iter_prefixes(self, delimiter: str, prefix: str = "") -> Iterator[str]: """Iterate over unique prefixes in the store up to delimiter, starting with prefix. If ``prefix`` contains ``delimiter``, return the prefix up to the first - occurence of delimiter after the prefix. + occurrence of delimiter after the prefix. The default uses an naive key iteration. Some backends may implement more efficient methods. @@ -173,7 +174,7 @@ def iter_prefixes(self, delimiter: str, prefix: str = "") -> Iterator[str]: yield k memory.add(k) - def keys(self, prefix: str = "") -> List[str]: + def keys(self, prefix: str = "") -> list[str]: """List all keys in the store starting with prefix. Parameters @@ -361,7 +362,7 @@ def _has_key(self, key: str) -> bool: Parameters ---------- key : str - Key to check the existance of. + Key to check the existence of. """ return key in self.keys() @@ -450,7 +451,7 @@ def __enter__(self): def __exit__( self, - exc_type: Optional[Type[BaseException]], + exc_type: Optional[type[BaseException]], exc_val: Optional[BaseException], exc_tb: Optional[TracebackType], ): @@ -464,7 +465,7 @@ def __exit__( @classmethod def _from_parsed_url( - cls, parsed_url: SplitResult, query: Dict[str, str] + cls, parsed_url: SplitResult, query: dict[str, str] ) -> "KeyValueStore": """Build a ``KeyValueStore`` from a parsed URL. diff --git a/minimalkv/_mixins.py b/minimalkv/_mixins.py index 71bee5f3..07a153ee 100644 --- a/minimalkv/_mixins.py +++ b/minimalkv/_mixins.py @@ -112,10 +112,10 @@ def _valid_ttl( return ttl_secs if not isinstance(ttl_secs, (int, float)): - raise ValueError("Not a valid ttl_secs value: %r" % ttl_secs) + raise ValueError(f"Not a valid ttl_secs value: {ttl_secs}") if ttl_secs < 0: - raise ValueError("ttl_secs must not be negative: %r" % ttl_secs) + raise ValueError(f"ttl_secs must not be negative: {ttl_secs}") return ttl_secs @@ -411,6 +411,6 @@ def _check_valid_key(self, key: Optional[str]) -> None: """ if key is not None: if not isinstance(key, str): - raise ValueError("%r is not a valid key type" % key) + raise ValueError(f"{key} is not a valid key type") elif not VALID_KEY_RE_EXTENDED.match(key) or key == "/": - raise ValueError("%r contains illegal characters" % key) + raise ValueError(f"{key} contains illegal characters") diff --git a/minimalkv/_store_creation.py b/minimalkv/_store_creation.py index e11fb5e0..8633d65a 100644 --- a/minimalkv/_store_creation.py +++ b/minimalkv/_store_creation.py @@ -1,6 +1,6 @@ import os import os.path -from typing import TYPE_CHECKING, Any, Dict +from typing import TYPE_CHECKING, Any from warnings import warn from minimalkv.fs import FilesystemStore @@ -9,7 +9,7 @@ from minimalkv._key_value_store import KeyValueStore -def create_store(type: str, params: Dict[str, Any]) -> "KeyValueStore": +def create_store(type: str, params: dict[str, Any]) -> "KeyValueStore": """Create store of type ``type`` with ``params``.""" warn( """ @@ -171,14 +171,8 @@ def _build_azure_url( protocol = default_endpoints_protocol or "https" if use_sas: return ( - "DefaultEndpointsProtocol={protocol};AccountName={account_name};" - "SharedAccessSignature={shared_access_signature}".format( - protocol=protocol, - account_name=account_name, - shared_access_signature=account_key, - ) + f"DefaultEndpointsProtocol={protocol};AccountName={account_name};" + f"SharedAccessSignature={account_key}" ) else: - return "DefaultEndpointsProtocol={protocol};AccountName={account_name};AccountKey={account_key}".format( - protocol=protocol, account_name=account_name, account_key=account_key - ) + return f"DefaultEndpointsProtocol={protocol};AccountName={account_name};AccountKey={account_key}" diff --git a/minimalkv/_urls.py b/minimalkv/_urls.py index 270a2d36..f43de42c 100644 --- a/minimalkv/_urls.py +++ b/minimalkv/_urls.py @@ -1,12 +1,12 @@ import base64 -from typing import Any, Dict, List +from typing import Any from uritools import urisplit TRUEVALUES = ("true",) -def url2dict(url: str, raise_on_extra_params: bool = False) -> Dict[str, Any]: +def url2dict(url: str, raise_on_extra_params: bool = False) -> dict[str, Any]: """Create dictionary with parameters from url. Parameters @@ -124,7 +124,7 @@ def extract_params(scheme, host, port, path, query, userinfo): # noqa D raise ValueError(f'Unknown storage type "{store_type}"') -def _parse_userinfo(userinfo: str) -> List[str]: +def _parse_userinfo(userinfo: str) -> list[str]: """Try to split the URL's userinfo into fields separated by `:`. The user info is the part between ``://`` and ``@``. If anything looks wrong, remind diff --git a/minimalkv/cache.py b/minimalkv/cache.py index 84cdc884..23121a87 100644 --- a/minimalkv/cache.py +++ b/minimalkv/cache.py @@ -17,7 +17,7 @@ class CacheDecorator(StoreDecorator): backing store. After their completion, the cache will be updated. No cache maintainenace above this is done by the decorator. The caching - store itselfs decides how large to grow the cache and which data to keep, + store itself decides how large to grow the cache and which data to keep, which data to throw away. Parameters @@ -25,7 +25,7 @@ class CacheDecorator(StoreDecorator): cache : KeyValueStore The caching backend. store : KeyValueStore - The backing store. This is the "authorative" backend. + The backing store. This is the "authoritative" backend. """ def __init__(self, cache: KeyValueStore, store: KeyValueStore): @@ -111,7 +111,7 @@ def get_file(self, key: str, file: Union[str, BinaryIO]) -> str: # return from cache return self.cache.get_file(key, file) - # if an IOError occured, file pointer may be dirty - cannot proceed + # if an IOError occurred, file pointer may be dirty - cannot proceed # safely def open(self, key: str) -> BinaryIO: diff --git a/minimalkv/crypt.py b/minimalkv/crypt.py index 7d564d8e..ccbe8be3 100644 --- a/minimalkv/crypt.py +++ b/minimalkv/crypt.py @@ -119,7 +119,7 @@ def get(self, key): # noqa D hm.update(buf) if not hm.digest() == hash: - raise VerificationException("Invalid hash on key %r" % key) + raise VerificationException(f"Invalid hash on key {key}") return buf diff --git a/minimalkv/db/mongo.py b/minimalkv/db/mongo.py index af438cb3..536de372 100644 --- a/minimalkv/db/mongo.py +++ b/minimalkv/db/mongo.py @@ -1,7 +1,8 @@ import pickle import re +from collections.abc import Iterator from io import BytesIO -from typing import BinaryIO, Iterator +from typing import BinaryIO from bson.binary import Binary diff --git a/minimalkv/db/sql.py b/minimalkv/db/sql.py index 138bc25e..61da238f 100644 --- a/minimalkv/db/sql.py +++ b/minimalkv/db/sql.py @@ -1,5 +1,6 @@ +from collections.abc import Iterator from io import BytesIO -from typing import BinaryIO, Iterator +from typing import BinaryIO from sqlalchemy import Column, LargeBinary, String, Table, exists, select from sqlalchemy.orm import Session diff --git a/minimalkv/decorator.py b/minimalkv/decorator.py index 89152d09..f5ffe828 100644 --- a/minimalkv/decorator.py +++ b/minimalkv/decorator.py @@ -1,5 +1,6 @@ +from collections.abc import Iterable, Iterator from types import TracebackType -from typing import Iterable, Iterator, Optional, Type +from typing import Optional from urllib.parse import quote_plus, unquote_plus from minimalkv._key_value_store import KeyValueStore @@ -49,7 +50,7 @@ def __enter__(self): def __exit__( self, - exc_type: Optional[Type[BaseException]], + exc_type: Optional[type[BaseException]], exc_val: Optional[BaseException], exc_tb: Optional[TracebackType], ): @@ -177,7 +178,7 @@ class URLEncodeKeysDecorator(KeyTransformingDecorator): def _map_key(self, key: str) -> str: # noqa D if not isinstance(key, str): - raise ValueError("%r is not a unicode string" % key) + raise ValueError(f"{key} is not a unicode string") quoted = quote_plus(key.encode("utf-8")) if isinstance(quoted, bytes): quoted = quoted.decode("utf-8") diff --git a/minimalkv/fs.py b/minimalkv/fs.py index 72bca9ca..c02dc9df 100644 --- a/minimalkv/fs.py +++ b/minimalkv/fs.py @@ -2,7 +2,8 @@ import os.path import shutil import urllib.parse -from typing import Any, BinaryIO, Callable, Iterator, List, Optional, Union, cast +from collections.abc import Iterator +from typing import Any, BinaryIO, Callable, Optional, Union, cast from minimalkv._key_value_store import KeyValueStore from minimalkv._mixins import CopyMixin, UrlMixin @@ -144,7 +145,7 @@ def _url_for(self, key: str) -> str: location = "/".join(urllib.parse.quote(p, safe="") for p in parts) return "file://" + location - def keys(self, prefix: str = "") -> List[str]: + def keys(self, prefix: str = "") -> list[str]: """List all keys in the store starting with prefix. Parameters @@ -177,7 +178,7 @@ def iter_prefixes(self, delimiter: str, prefix: str = "") -> Iterator[str]: """Iterate over unique prefixes in the store up to delimiter, starting with prefix. If ``prefix`` contains ``delimiter``, return the prefix up to the first - occurence of delimiter after the prefix. + occurrence of delimiter after the prefix. Parameters ---------- diff --git a/minimalkv/fsspecstore.py b/minimalkv/fsspecstore.py index dcd178f6..692d941b 100644 --- a/minimalkv/fsspecstore.py +++ b/minimalkv/fsspecstore.py @@ -1,6 +1,7 @@ import io import warnings -from typing import TYPE_CHECKING, BinaryIO, Iterator, Optional, Union +from collections.abc import Iterator +from typing import TYPE_CHECKING, BinaryIO, Optional, Union from minimalkv.net._net_common import LAZY_PROPERTY_ATTR_PREFIX, lazy_property diff --git a/minimalkv/git.py b/minimalkv/git.py index faad0400..62eccefa 100644 --- a/minimalkv/git.py +++ b/minimalkv/git.py @@ -1,7 +1,8 @@ import re import time +from collections.abc import Iterator from io import BytesIO -from typing import BinaryIO, Iterator, List, Optional, Union +from typing import BinaryIO, Optional, Union from dulwich.objects import Blob, Commit, Tree from dulwich.repo import Repo @@ -13,9 +14,9 @@ def _on_tree( repo: Repo, tree: Tree, - components: List[bytes], + components: list[bytes], obj: Optional[Union[Blob, Tree]], -) -> List[Tree]: +) -> list[Tree]: """Mount an object on a tree, using the given path components. Parameters @@ -106,10 +107,10 @@ def __init__(self, repo_path: str, branch: bytes = b"master", subdir: bytes = b" self.subdir = re.sub("#/+#", "/", subdir.decode("ascii").strip("/")) @property - def _subdir_components(self) -> List[bytes]: + def _subdir_components(self) -> list[bytes]: return [c.encode("ascii") for c in self.subdir.split("/")] - def _key_components(self, key: str) -> List[bytes]: + def _key_components(self, key: str) -> list[bytes]: return [c.encode("ascii") for c in key.split("/")] @property diff --git a/minimalkv/memory/__init__.py b/minimalkv/memory/__init__.py index 072f5131..51231e09 100644 --- a/minimalkv/memory/__init__.py +++ b/minimalkv/memory/__init__.py @@ -1,5 +1,6 @@ +from collections.abc import Iterator from io import BytesIO -from typing import Dict, Iterator, Optional +from typing import Optional from uritools import SplitResult @@ -14,9 +15,9 @@ class DictStore(KeyValueStore, CopyMixin): """ - d: Dict[str, bytes] + d: dict[str, bytes] - def __init__(self, d: Optional[Dict[str, bytes]] = None): + def __init__(self, d: Optional[dict[str, bytes]] = None): self.d = d or {} def _delete(self, key: str) -> None: @@ -48,6 +49,6 @@ def iter_keys(self, prefix: str = "") -> Iterator[str]: @classmethod def _from_parsed_url( - cls, parsed_url: SplitResult, query: Dict[str, str] + cls, parsed_url: SplitResult, query: dict[str, str] ) -> "DictStore": return cls() diff --git a/minimalkv/memory/redisstore.py b/minimalkv/memory/redisstore.py index d51a22e7..a8ab83f7 100644 --- a/minimalkv/memory/redisstore.py +++ b/minimalkv/memory/redisstore.py @@ -1,7 +1,8 @@ #!/usr/bin/env python import re +from collections.abc import Iterator from io import BytesIO -from typing import TYPE_CHECKING, BinaryIO, Iterator, List, Optional, Union +from typing import TYPE_CHECKING, BinaryIO, Optional, Union if TYPE_CHECKING: from redis import StrictRedis @@ -27,7 +28,7 @@ def __init__(self, redis: "StrictRedis"): def _delete(self, key: str) -> int: return self.redis.delete(key) - def keys(self, prefix: str = "") -> List[str]: + def keys(self, prefix: str = "") -> list[str]: """List all keys in the store starting with prefix. Parameters diff --git a/minimalkv/net/boto3store.py b/minimalkv/net/boto3store.py index d5611571..109a25e0 100644 --- a/minimalkv/net/boto3store.py +++ b/minimalkv/net/boto3store.py @@ -1,12 +1,13 @@ import io +from collections.abc import Iterator from contextlib import contextmanager from shutil import copyfileobj -from typing import Iterator, List, Optional +from typing import Optional from minimalkv import CopyMixin, KeyValueStore, UrlMixin -def _public_readable(grants: List) -> bool: # TODO: What kind of list +def _public_readable(grants: list) -> bool: # TODO: What kind of list """Take a list of grants from an ACL and check if they allow public read access.""" for grant in grants: # see: https://docs.aws.amazon.com/AmazonS3/latest/dev/acl-overview.html @@ -61,8 +62,7 @@ def seek(self, offset: int, whence=io.SEEK_SET) -> int: # noqa D self.position = self.size + offset else: raise ValueError( - "invalid whence (%r, should be %d, %d, %d)" - % (whence, io.SEEK_SET, io.SEEK_CUR, io.SEEK_END) + f"invalid whence ({whence}, should be {io.SEEK_SET}, {io.SEEK_CUR}, {io.SEEK_END})" ) return self.position @@ -73,7 +73,7 @@ def seekable(self) -> bool: # noqa D def read(self, size=-1): # noqa D if size == -1: # Read to the end of the file - range_header = "bytes=%d-" % self.position + range_header = f"bytes={self.position}-" self.seek(offset=0, whence=io.SEEK_END) else: new_position = self.position + size @@ -83,7 +83,7 @@ def read(self, size=-1): # noqa D if new_position >= self.size: return self.read() - range_header = "bytes=%d-%d" % (self.position, new_position - 1) + range_header = f"bytes={self.position}-{new_position - 1}" self.seek(offset=size, whence=io.SEEK_CUR) return self.s3_object.get(Range=range_header)["Body"].read() diff --git a/minimalkv/net/botostore.py b/minimalkv/net/botostore.py index e76fbff4..04ecdbac 100644 --- a/minimalkv/net/botostore.py +++ b/minimalkv/net/botostore.py @@ -1,5 +1,6 @@ +from collections.abc import Iterator from contextlib import contextmanager -from typing import BinaryIO, Dict, Iterator, cast +from typing import BinaryIO, cast from minimalkv import CopyMixin, KeyValueStore, UrlMixin @@ -45,7 +46,7 @@ def __new_key(self, name): k.update_metadata(self.metadata) return k - def __upload_args(self) -> Dict[str, str]: + def __upload_args(self) -> dict[str, str]: """Generate a dictionary of arguments to pass to ``set_content_from`` functions. This allows us to save API calls by passing the necessary parameters on with the diff --git a/minimalkv/net/s3fsstore.py b/minimalkv/net/s3fsstore.py index c72ad5ba..50c31a42 100644 --- a/minimalkv/net/s3fsstore.py +++ b/minimalkv/net/s3fsstore.py @@ -1,6 +1,6 @@ import os import warnings -from typing import Dict, NamedTuple, Optional +from typing import NamedTuple, Optional from uritools import SplitResult @@ -117,7 +117,7 @@ def _url_for(self, key) -> str: @classmethod def _from_parsed_url( - cls, parsed_url: SplitResult, query: Dict[str, str] + cls, parsed_url: SplitResult, query: dict[str, str] ) -> "S3FSStore": # noqa D """Build an ``S3FSStore`` from a parsed URL. diff --git a/pixi.lock b/pixi.lock new file mode 100644 index 00000000..ef16ee7f --- /dev/null +++ b/pixi.lock @@ -0,0 +1,31157 @@ +version: 5 +environments: + build: + channels: + - url: https://conda.anaconda.org/conda-forge/ + packages: + linux-64: + - conda: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 + - 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__osx >=11.0 + - libzlib >=1.2.13,<2.0.0a0 + license: BSD-3-Clause + license_family: BSD + size: 405089 + timestamp: 1714723101397 diff --git a/pixi.toml b/pixi.toml new file mode 100644 index 00000000..f7cf170f --- /dev/null +++ b/pixi.toml @@ -0,0 +1,95 @@ +[project] +name = "minimalkv" +channels = ["conda-forge"] +platforms = ["osx-arm64", "osx-64", "linux-64", "win-64"] + +[tasks] +postinstall = "pip install --no-build-isolation --no-deps --disable-pip-version-check -e ." + +[dependencies] +python = ">=3.9" +azure-storage-blob = "*" +boto = "*" +boto3 = "*" +dulwich = "*" +fsspec = "*" +gcsfs = ">=2022.10.0" +s3fs = ">=2022.10.0" +psycopg2 = "*" +pyarrow = "*" +pymongo = "*" +pymysql = "*" +redis-py = "*" +sqlalchemy = "*" +uritools = "*" + +[host-dependencies] +pip = "*" +setuptools = ">=61" +setuptools-scm = "*" +wheel = "*" + +[feature.test.dependencies] +docker-compose = "*" +pytest = ">=6" +pytest-cov = "*" +pytest-mock = "*" +pytest-xdist = "*" +mypy = "*" +types-mock = "*" +types-setuptools = "*" +types-redis = "*" +types-boto = "*" +boto3-stubs = "*" +mock = "*" +[feature.test.tasks] +test = "pytest" +test-coverage = "pytest --cov=minimalkv --cov-report=xml --cov-report=term-missing" + +[feature.build.dependencies] +python-build = "*" +twine = "*" +[feature.build.tasks] +build-wheel = "python -m build --no-isolation ." +check-wheel = "twine check dist/*" + +[feature.lint.dependencies] +pre-commit = "*" +insert-license-header = "*" +docformatter = "*" +ruff = "*" +prettier = "*" +taplo = "*" +pre-commit-hooks = "*" +typos = "*" +[feature.lint.tasks] +pre-commit-install = "pre-commit install" +pre-commit-run = "pre-commit run -a" +pre-commit-update = "pre-commit autoupdate" + +[feature.docs.dependencies] +sphinx = "*" +[feature.docs.tasks] +# Run task `postinstall` before building docs in docs environment +docs = "cd docs && make html" +readthedocs = "rm -rf $READTHEDOCS_OUTPUT/html && cp -r docs/_build/html $READTHEDOCS_OUTPUT/html" + + +[feature.py39.dependencies] +python = "3.9.*" +[feature.py310.dependencies] +python = "3.10.*" +[feature.py311.dependencies] +python = "3.11.*" +[feature.py312.dependencies] +python = "3.12.*" + +[environments] +default = ["test"] +py39 = ["py39", "test"] +py310 = ["py310", "test"] +py311 = ["py311", "test"] +py312 = ["py312", "test"] +docs = ["docs"] +build = ["build"] +lint = { features = ["lint"], no-default-feature = true } diff --git a/pyproject.toml b/pyproject.toml index 6090ff70..3611f291 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -10,20 +10,21 @@ dynamic = ["version"] license = { file = "LICENSE" } description = "A key-value storage for binary data, support many backends." readme = "README.rst" -authors = [{name = "Data Engineering Collective", email = "minimalkv@uwekorn.com"}] +authors = [ + { name = "Data Engineering Collective", email = "minimalkv@uwekorn.com" }, +] classifiers = [ - "License :: OSI Approved :: BSD License", - "Programming Language :: Python :: 3", - "Programming Language :: Python :: 3.8", - "Programming Language :: Python :: 3.9", - "Programming Language :: Python :: 3.10", - "Programming Language :: Python :: 3.11", - "Programming Language :: Python :: 3.12", - "Development Status :: 5 - Production/Stable", - "Operating System :: OS Independent", + "License :: OSI Approved :: BSD License", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.9", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", + "Development Status :: 5 - Production/Stable", + "Operating System :: OS Independent", ] dependencies = ["uritools"] -requires-python = ">=3.8" +requires-python = ">=3.9" [project.urls] repository = "https://github.com/data-engineering-collective/minimalkv" @@ -36,11 +37,11 @@ minimalkv = ["py.typed"] [tool.ruff] line-length = 88 -target-version = "py38" +target-version = "py39" [tool.ruff.lint] ignore = ["E203", "E266", "E501", "C901", "D104", "D100"] -select = ["B", "C", "E", "F", "W", "B9", "D", "I"] +select = ["B", "C", "E", "F", "W", "B9", "D", "I", "UP"] [tool.ruff.lint.isort] force-wrap-aliases = true @@ -60,7 +61,15 @@ quote-style = "double" indent-style = "space" [tool.mypy] -python_version = 3.8 +python_version = "3.9" ignore_missing_imports = true no_implicit_optional = true check_untyped_defs = true + +[tool.pytest.ini_options] +testpaths = ["tests"] + +[tool.typos] +files.extend-exclude = ["tests/storefact"] +[tool.typos.default.extend-words] +ue = "ue" diff --git a/terraform/main.tf b/terraform/main.tf index c8541da9..3be53e5e 100644 --- a/terraform/main.tf +++ b/terraform/main.tf @@ -50,7 +50,7 @@ resource "google_iam_workload_identity_pool_provider" "github_actions_provider" resource "google_service_account" "service_account_gha" { account_id = "sa-github-actions" - display_name = "GHA Service Accont" + display_name = "GHA Service Account" } # Grant the external identities permission to impersonate the service account @@ -76,4 +76,4 @@ resource "google_project_iam_member" "sa-storageaccess" { role = "roles/storage.admin" member = "serviceAccount:${google_service_account.service_account_gha.email}" project = "qc-minimalkv" -} \ No newline at end of file +} diff --git a/tests/basic_store.py b/tests/basic_store.py index 93fc6c56..67cc085f 100644 --- a/tests/basic_store.py +++ b/tests/basic_store.py @@ -52,24 +52,24 @@ def test_store_and_copy(self, store, key, key2, value): pytest.skip( "'test_store_and_copy' can only be tested with stores that use the 'CopyMixin' mixin." ) - store.put(key, value) - assert store.get(key) == value + store.put(key, value) # type: ignore[attr-defined] + assert store.get(key) == value # type: ignore[attr-defined] store.copy(key, key2) - assert store.get(key) == value - assert store.get(key2) == value + assert store.get(key) == value # type: ignore[attr-defined] + assert store.get(key2) == value # type: ignore[attr-defined] def test_store_and_copy_overwrite(self, store, key, key2, value, value2): if not isinstance(store, CopyMixin): pytest.skip( "'test_store_and_copy_overwrite' can only be tested with stores that use the 'CopyMixin' mixin." ) - store.put(key, value) - store.put(key2, value2) - assert store.get(key) == value - assert store.get(key2) == value2 + store.put(key, value) # type: ignore[attr-defined] + store.put(key2, value2) # type: ignore[attr-defined] + assert store.get(key) == value # type: ignore[attr-defined] + assert store.get(key2) == value2 # type: ignore[attr-defined] store.copy(key, key2) - assert store.get(key) == value - assert store.get(key2) == value + assert store.get(key) == value # type: ignore[attr-defined] + assert store.get(key2) == value # type: ignore[attr-defined] def test_open_incremental_read(self, store, key, long_value): store.put_file(key, BytesIO(long_value)) @@ -78,27 +78,27 @@ def test_open_incremental_read(self, store, key, long_value): assert long_value[3:5] == ok.read(2) assert long_value[5:8] == ok.read(3) - def test_key_error_on_nonexistant_get(self, store, key): + def test_key_error_on_nonexistent_get(self, store, key): with pytest.raises(KeyError): store.get(key) - def test_key_error_on_nonexistant_copy(self, store, key, key2): + def test_key_error_on_nonexistent_copy(self, store, key, key2): if not isinstance(store, CopyMixin): pytest.skip( - "'test_key_error_on_nonexistant_copy' can only be tested with stores that use the 'CopyMixin' mixin." + "'test_key_error_on_nonexistent_copy' can only be tested with stores that use the 'CopyMixin' mixin." ) with pytest.raises(KeyError): store.copy(key, key2) - def test_key_error_on_nonexistant_open(self, store, key): + def test_key_error_on_nonexistent_open(self, store, key): with pytest.raises(KeyError): store.open(key) - def test_key_error_on_nonexistant_get_file(self, store, key): + def test_key_error_on_nonexistent_get_file(self, store, key): with pytest.raises(KeyError): store.get_file(key, BytesIO()) - def test_key_error_on_nonexistant_get_filename(self, store, key, tmp_path): + def test_key_error_on_nonexistent_get_filename(self, store, key, tmp_path): with pytest.raises(KeyError): store.get_file(key, "/dev/null") diff --git a/tests/idgens.py b/tests/idgens.py index 0454341e..a71766b5 100644 --- a/tests/idgens.py +++ b/tests/idgens.py @@ -87,11 +87,7 @@ def templated_hashstore(self, store, hashfunc, idgen_template): @pytest.fixture def validate_hash(self, hashfunc): - hash_regexp = re.compile( - r"^[0-9a-f]{{{}}}$".format( - hashfunc().digest_size * 2, - ) - ) + hash_regexp = re.compile(rf"^[0-9a-f]{{{hashfunc().digest_size * 2}}}$") return hash_regexp.match diff --git a/tests/minio-container/files/file1.txt b/tests/minio-container/files/file1.txt index dd954e7a..ac3e272b 100644 --- a/tests/minio-container/files/file1.txt +++ b/tests/minio-container/files/file1.txt @@ -1 +1 @@ -content1 \ No newline at end of file +content1 diff --git a/tests/minio-container/files/file2.txt b/tests/minio-container/files/file2.txt index db00fd65..637f0347 100644 --- a/tests/minio-container/files/file2.txt +++ b/tests/minio-container/files/file2.txt @@ -1 +1 @@ -content2 \ No newline at end of file +content2 diff --git a/tests/minio-container/scripts/startup.sh b/tests/minio-container/scripts/startup.sh index ef4b30fe..223209ab 100755 --- a/tests/minio-container/scripts/startup.sh +++ b/tests/minio-container/scripts/startup.sh @@ -29,4 +29,4 @@ mc cp /files/file2.txt myminio/bucket2 # Keep container running -wait \ No newline at end of file +wait diff --git a/tests/store_creation/test_creation_from_params.py b/tests/store_creation/test_creation_from_params.py index 72729ca7..9d4b8976 100644 --- a/tests/store_creation/test_creation_from_params.py +++ b/tests/store_creation/test_creation_from_params.py @@ -4,7 +4,7 @@ def test_create_store_azure(mocker): - # Mock HAzureBlockBlobStore also here, becase otherwise it will try to inherit from + # Mock HAzureBlockBlobStore also here, because otherwise it will try to inherit from # the mock object `mock_azure` created below, which will fail. mock_hazure = mocker.patch("minimalkv._hstores.HAzureBlockBlobStore") mock_azure = mocker.patch("minimalkv.net.azurestore.AzureBlockBlobStore") diff --git a/tests/test_azure_store.py b/tests/test_azure_store.py index 0dee10f9..d526ae17 100644 --- a/tests/test_azure_store.py +++ b/tests/test_azure_store.py @@ -34,9 +34,7 @@ def get_azure_conn_string(): account_key = parser.get(section, "account_key") protocol = parser.get(section, "protocol") endpoint = parser.get(section, "endpoint") - conn_string = "DefaultEndpointsProtocol={};AccountName={};AccountKey={}".format( - protocol, account_name, account_key - ) + conn_string = f"DefaultEndpointsProtocol={protocol};AccountName={account_name};AccountKey={account_key}" if endpoint: conn_string += f";BlobEndpoint={endpoint}" return conn_string @@ -53,12 +51,12 @@ def _delete_container(conn_string, container): s.delete_container(container) except AzureError as ex: # ignore the ContainerNotFound error: - if ex.error_code != "ContainerNotFound": + if ex.error_code != "ContainerNotFound": # type: ignore[attr-defined] raise s.close() except ImportError: # for azure-storage-blob<12 - from azure.storage.blob import BlockBlobService + from azure.storage.blob import BlockBlobService # type: ignore[attr-defined] s = BlockBlobService(connection_string=conn_string) s.delete_container(container) diff --git a/tests/test_boto3_store.py b/tests/test_boto3_store.py index 832d237d..aef1ec05 100644 --- a/tests/test_boto3_store.py +++ b/tests/test_boto3_store.py @@ -72,11 +72,11 @@ def store(self, request, boto3store, s3fsstore): # Disable max key length test as it leads to problems with minio test_max_key_length = None - def test_get_filename_nonexistant(self, store, key, tmp_path): + def test_get_filename_nonexistent(self, store, key, tmp_path): with pytest.raises(KeyError): store.get_file(key, os.path.join(str(tmp_path), "a")) - def test_key_error_on_nonexistant_get_filename(self, store, key, tmp_path): + def test_key_error_on_nonexistent_get_filename(self, store, key, tmp_path): with pytest.raises(KeyError): store.get_file(key, os.path.join(str(tmp_path), "a")) diff --git a/tests/test_boto_store.py b/tests/test_boto_store.py index 2912bc0a..95a8b937 100644 --- a/tests/test_boto_store.py +++ b/tests/test_boto_store.py @@ -85,14 +85,14 @@ def store(self, bucket, prefix, reduced_redundancy): # Disable max key length test as it leads to problems with minio test_max_key_length = None - def test_get_filename_nonexistant(self, store, key, tmp_path): + def test_get_filename_nonexistent(self, store, key, tmp_path): # NOTE: boto misbehaves here and tries to erase the target file # the parent tests use /dev/null, which you really should not try # to os.remove! with pytest.raises(KeyError): store.get_file(key, os.path.join(str(tmp_path), "a")) - def test_key_error_on_nonexistant_get_filename(self, store, key, tmp_path): + def test_key_error_on_nonexistent_get_filename(self, store, key, tmp_path): with pytest.raises(KeyError): store.get_file(key, os.path.join(str(tmp_path), "a")) diff --git a/tests/test_gcloud_store.py b/tests/test_gcloud_store.py index 20a0bc92..5faaaf02 100644 --- a/tests/test_gcloud_store.py +++ b/tests/test_gcloud_store.py @@ -7,8 +7,9 @@ import os import pickle import time +from collections.abc import Generator from configparser import ConfigParser -from typing import Optional +from typing import Any, Optional, Union from uuid import uuid4 from basic_store import BasicStore, OpenSeekTellStore @@ -23,7 +24,7 @@ @pytest.fixture(scope="module") -def gc_credentials(): +def gc_credentials() -> Generator[Union[AnonymousCredentials, str, None], Any, None]: # If we have credentials in the environment, we don't need to do anything if "GOOGLE_APPLICATION_CREDENTIALS" in os.environ: yield None @@ -43,6 +44,7 @@ def gc_credentials(): credentials_path or emulator_endpoint ), "Either set endpoint (for gc emulation) or credentials_json_path (for actual gc)" + credentials: Union[AnonymousCredentials, str, None] = None if emulator_endpoint: # google's client library looks for this env var # if we didn't set it it would use the standard endpoint diff --git a/tests/test_hmac.py b/tests/test_hmac.py index 922b14e0..4e988e24 100644 --- a/tests/test_hmac.py +++ b/tests/test_hmac.py @@ -10,7 +10,7 @@ class TestHMACFileReader: @pytest.fixture - def bad_datas(self, value): + def bad_data(self, value): val = value * 3 def _alter_byte(byte_string, pos): @@ -75,19 +75,19 @@ def test_reading_with_limit( assert b"".join(chunks) == value - def test_manipulated_input_full_read(self, secret_key, value, bad_datas, hashfunc): - for bad_data in bad_datas: + def test_manipulated_input_full_read(self, secret_key, value, bad_data, hashfunc): + for bad_data_point in bad_data: reader = _HMACFileReader( - hmac.HMAC(secret_key, None, hashfunc), BytesIO(bad_data) + hmac.HMAC(secret_key, None, hashfunc), BytesIO(bad_data_point) ) with pytest.raises(VerificationException): reader.read() - def test_manipulated_input_incremental_read(self, secret_key, bad_datas, hashfunc): - for bad_data in bad_datas: + def test_manipulated_input_incremental_read(self, secret_key, bad_data, hashfunc): + for bad_data_point in bad_data: reader = _HMACFileReader( - hmac.HMAC(secret_key, None, hashfunc), BytesIO(bad_data) + hmac.HMAC(secret_key, None, hashfunc), BytesIO(bad_data_point) ) with pytest.raises(VerificationException): diff --git a/tests/test_prefix_decorator.py b/tests/test_prefix_decorator.py index 0a1b3dcc..56ec1dea 100644 --- a/tests/test_prefix_decorator.py +++ b/tests/test_prefix_decorator.py @@ -87,5 +87,5 @@ def test_multiple_prefixes_one_store(self, store, prefix, prefix2, key, value): def test_pickle(self, store): import pickle - rountrip = pickle.loads(pickle.dumps(store)) - assert isinstance(rountrip, PrefixDecorator) + roundtrip = pickle.loads(pickle.dumps(store)) + assert isinstance(roundtrip, PrefixDecorator) diff --git a/tests/test_s3fs_aws.py b/tests/test_s3fs_aws.py index 7a5568f6..b169f215 100644 --- a/tests/test_s3fs_aws.py +++ b/tests/test_s3fs_aws.py @@ -1,6 +1,6 @@ import os from random import randint -from typing import Tuple, Union +from typing import Union from urllib.parse import quote_plus import pytest @@ -10,7 +10,7 @@ @pytest.fixture() -def aws_credentials() -> Tuple[str, str, Union[str, None]]: +def aws_credentials() -> tuple[str, str, Union[str, None]]: env_var_name = "AWS_PROFILE" profile_name = os.environ.get(env_var_name, None) @@ -36,7 +36,7 @@ def aws_credentials() -> Tuple[str, str, Union[str, None]]: if "CI_IN_FORK" not in os.environ or os.environ["CI_IN_FORK"].lower() == "true": # We skip if the variable is not set at all (local development) - # or if it is explicitely set to "true". + # or if it is explicitly set to "true". if "CI_IN_FORK" in os.environ: msg += "Skipping, because you (or the CI) set 'CI_IN_FORK=true'." @@ -90,7 +90,7 @@ def test_id() -> str: def test_s3fs_aws_integration( test_id, - aws_credentials: Tuple[str, str, Union[str, None]], + aws_credentials: tuple[str, str, Union[str, None]], ci_bucket_name, ci_s3_point, ): diff --git a/tests/test_s3fs_minio.py b/tests/test_s3fs_minio.py index 640e86b9..977e4c54 100644 --- a/tests/test_s3fs_minio.py +++ b/tests/test_s3fs_minio.py @@ -7,7 +7,7 @@ class User(NamedTuple): access_key: str secret_key: str bucket_name: str - # The mapping between users and accessable buckets can be arbitrary. + # The mapping between users and accessible buckets can be arbitrary. # The config in "tests/minio-container/policies" is very simple, allowing # user1 -> bucket1 # user2 -> bucket2