diff --git a/python/hail/docs/representation/index.rst b/python/hail/docs/representation/index.rst index 02d9e452335..acfca5934e5 100644 --- a/python/hail/docs/representation/index.rst +++ b/python/hail/docs/representation/index.rst @@ -14,11 +14,11 @@ representation hail.representation.AltAllele hail.representation.Call - hail.representation.ReferenceGenome hail.representation.Genotype hail.representation.Interval hail.representation.Locus hail.representation.Pedigree + hail.representation.ReferenceGenome hail.representation.Struct hail.representation.Trio hail.representation.Variant diff --git a/python/hail/representation/genomeref.py b/python/hail/representation/genomeref.py index 680199d1ce6..8ee6892ea26 100644 --- a/python/hail/representation/genomeref.py +++ b/python/hail/representation/genomeref.py @@ -6,7 +6,7 @@ class ReferenceGenome(HistoryMixin): - """An object that represents a `reference genome `_. + """An object that represents a `reference genome `__. :param str name: Name of reference. @@ -146,10 +146,10 @@ def par(self): def contig_length(self, contig): """Contig length. - :param contig: Contig + :param contig: Contig. :type contig: str - :return: Length of contig + :return: Length of contig. :rtype: int """ return self._jrep.contigLength(contig) @@ -160,7 +160,7 @@ def contig_length(self, contig): def GRCh37(cls): """Reference genome for GRCh37. - Data from `GATK resource bundle `_. + Data from `GATK resource bundle `__. >>> grch37 = ReferenceGenome.GRCh37() @@ -174,7 +174,7 @@ def GRCh37(cls): def GRCh38(cls): """Reference genome for GRCh38. - Data from `GATK resource bundle `_. + Data from `GATK resource bundle `__. >>> grch38 = ReferenceGenome.GRCh38()