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asset.py
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asset.py
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from __future__ import annotations
import re
from dandiapi.api.asset_paths import search_asset_paths
from dandiapi.api.services.asset import (
add_asset_to_version,
change_asset,
remove_asset_from_version,
)
from dandiapi.api.services.asset.exceptions import DraftDandisetNotModifiableError
from dandiapi.api.services.embargo.exceptions import DandisetUnembargoInProgressError
from dandiapi.zarr.models import ZarrArchive
try:
from storages.backends.s3 import S3Storage
except ImportError:
# This should only be used for type interrogation, never instantiation
S3Storage = type('FakeS3Storage', (), {})
try:
from minio_storage.storage import MinioStorage
except ImportError:
# This should only be used for type interrogation, never instantiation
MinioStorage = type('FakeMinioStorage', (), {})
from django.conf import settings
from django.db import transaction
from django.http import HttpResponse, HttpResponseRedirect
from django.utils.decorators import method_decorator
from django_filters import rest_framework as filters
from drf_yasg.utils import swagger_auto_schema
from guardian.decorators import permission_required_or_403
from rest_framework import serializers, status
from rest_framework.decorators import action
from rest_framework.exceptions import NotAuthenticated, NotFound, PermissionDenied
from rest_framework.generics import get_object_or_404
from rest_framework.response import Response
from rest_framework.viewsets import GenericViewSet, ReadOnlyModelViewSet
from rest_framework_extensions.mixins import DetailSerializerMixin, NestedViewSetMixin
from dandiapi.api.models import Asset, AssetBlob, Dandiset, Version
from dandiapi.api.models.asset import validate_asset_path
from dandiapi.api.models.dandiset import DandisetUserObjectPermission
from dandiapi.api.views.common import (
ASSET_ID_PARAM,
VERSIONS_DANDISET_PK_PARAM,
VERSIONS_VERSION_PARAM,
)
from dandiapi.api.views.pagination import DandiPagination, LazyPagination
from dandiapi.api.views.serializers import (
AssetDetailSerializer,
AssetDownloadQueryParameterSerializer,
AssetListSerializer,
AssetPathsQueryParameterSerializer,
AssetPathsSerializer,
AssetSerializer,
AssetValidationSerializer,
)
class AssetFilter(filters.FilterSet):
path = filters.CharFilter(lookup_expr='istartswith')
order = filters.OrderingFilter(fields=['created', 'modified', 'path'])
class Meta:
model = Asset
fields = ['path']
class AssetViewSet(DetailSerializerMixin, GenericViewSet):
queryset = Asset.objects.all().select_related('zarr').order_by('created')
serializer_class = AssetSerializer
serializer_detail_class = AssetDetailSerializer
lookup_field = 'asset_id'
lookup_value_regex = Asset.UUID_REGEX
filter_backends = [filters.DjangoFilterBackend]
filterset_class = AssetFilter
def raise_if_unauthorized(self):
# We need to check the dandiset to see if it's embargoed, and if so whether or not the
# user has ownership
asset_id = self.kwargs.get('asset_id')
if asset_id is None:
return
asset = get_object_or_404(Asset.objects.select_related('blob'), asset_id=asset_id)
# TODO: When EmbargoedZarrArchive is implemented, check that as well
if not (asset.blob and asset.blob.embargoed):
return
# Clients must be authenticated to access it
if not self.request.user.is_authenticated:
raise NotAuthenticated
# Admins are allowed to access any embargoed asset blob
if self.request.user.is_superuser:
return
# User must be an owner on any of the dandisets this asset belongs to
asset_dandisets = Dandiset.objects.filter(versions__in=asset.versions.all())
asset_dandisets_owned_by_user = DandisetUserObjectPermission.objects.filter(
content_object__in=asset_dandisets,
user=self.request.user,
permission__codename='owner',
)
if not asset_dandisets_owned_by_user.exists():
raise PermissionDenied
def get_queryset(self):
self.raise_if_unauthorized()
return super().get_queryset()
@swagger_auto_schema(
responses={
200: 'The asset metadata.',
},
operation_summary="Get an asset's metadata",
)
def retrieve(self, request, **kwargs):
asset = self.get_object()
return Response(asset.full_metadata)
@swagger_auto_schema(
method='GET',
operation_summary='Get the download link for an asset.',
operation_description='',
query_serializer=AssetDownloadQueryParameterSerializer,
responses={
200: None, # This disables the auto-generated 200 response
301: 'Redirect to object store',
},
)
@action(methods=['GET', 'HEAD'], detail=True)
def download(self, request, *args, **kwargs):
asset = self.get_object()
# Raise error if zarr
if asset.is_zarr:
return Response(
'Unable to provide download link for zarr assets.'
' Please browse the zarr files directly to do so.',
status=status.HTTP_400_BAD_REQUEST,
)
# Assign asset_blob
asset_blob = asset.blob
# Redirect to correct presigned URL
storage = asset_blob.blob.storage
serializer = AssetDownloadQueryParameterSerializer(data=request.query_params)
serializer.is_valid(raise_exception=True)
content_disposition = serializer.validated_data['content_disposition']
content_type = asset.metadata.get('encodingFormat', 'application/octet-stream')
asset_basename = asset.path.split('/')[-1]
if content_disposition == 'attachment':
return HttpResponseRedirect(
storage.generate_presigned_download_url(asset_blob.blob.name, asset_basename)
)
if content_disposition == 'inline':
url = storage.generate_presigned_inline_url(
asset_blob.blob.name,
asset_basename,
content_type,
)
if content_type.startswith('video/'):
return HttpResponse(
f"""
<video autoplay muted controls>
<source src="{url}">
</video>
""",
content_type='text/html',
)
return HttpResponseRedirect(url)
raise TypeError('Invalid content_disposition: %s', content_disposition)
@swagger_auto_schema(
method='GET',
operation_summary='Django serialization of an asset',
manual_parameters=[ASSET_ID_PARAM],
responses={200: AssetDetailSerializer},
)
@action(methods=['GET', 'HEAD'], detail=True)
def info(self, *args, **kwargs):
asset = self.get_object()
serializer = AssetDetailSerializer(instance=asset)
return Response(serializer.data, status=status.HTTP_200_OK)
class AssetRequestSerializer(serializers.Serializer):
metadata = serializers.JSONField()
blob_id = serializers.UUIDField(required=False)
zarr_id = serializers.UUIDField(required=False)
def get_blob(self) -> AssetBlob | None:
asset_blob = None
if 'blob_id' in self.validated_data:
asset_blob = get_object_or_404(AssetBlob, blob_id=self.validated_data['blob_id'])
return asset_blob
def get_zarr_archive(self) -> ZarrArchive | None:
zarr_archive = None
if 'zarr_id' in self.validated_data:
zarr_archive = get_object_or_404(ZarrArchive, zarr_id=self.validated_data['zarr_id'])
return zarr_archive
def validate(self, data):
"""Ensure blob_id and zarr_id are mutually exclusive."""
if ('blob_id' in data) == ('zarr_id' in data):
raise serializers.ValidationError(
{'blob_id': 'Exactly one of blob_id or zarr_id must be specified.'}
)
if 'path' not in data['metadata'] or not data['metadata']['path']:
raise serializers.ValidationError({'metadata': 'No path specified in metadata.'})
# Validate the asset path. If this fails, it will raise a django ValidationError, which
# will be caught further up the stack and be converted to a DRF ValidationError
validate_asset_path(data['metadata']['path'])
data['metadata'].setdefault('schemaVersion', settings.DANDI_SCHEMA_VERSION)
return data
class NestedAssetViewSet(NestedViewSetMixin, AssetViewSet, ReadOnlyModelViewSet):
pagination_class = DandiPagination
def raise_if_unauthorized(self):
version = get_object_or_404(
Version.objects.select_related('dandiset'),
dandiset__pk=self.kwargs['versions__dandiset__pk'],
version=self.kwargs['versions__version'],
)
if version.dandiset.embargo_status != Dandiset.EmbargoStatus.OPEN:
if not self.request.user.is_authenticated:
# Clients must be authenticated to access it
raise NotAuthenticated
if not self.request.user.has_perm('owner', version.dandiset):
# The user does not have ownership permission
raise PermissionDenied
# Override this here to prevent the need for raise_if_unauthorized to exist in get_queryset
def get_object(self):
self.raise_if_unauthorized()
return super().get_object()
# Override this to skip the call to raise_if_unauthorized in AssetViewSet
def get_queryset(self):
return super(AssetViewSet, self).get_queryset()
# Redefine info and download actions to update swagger manual_parameters
@swagger_auto_schema(
method='GET',
operation_summary='Django serialization of an asset',
manual_parameters=[
ASSET_ID_PARAM,
VERSIONS_DANDISET_PK_PARAM,
VERSIONS_VERSION_PARAM,
],
responses={200: AssetDetailSerializer},
)
@action(detail=True, methods=['GET'])
def info(self, *args, **kwargs):
"""Django serialization of an asset."""
return super().info()
@swagger_auto_schema(
method='GET',
operation_summary='Get the download link for an asset.',
operation_description='',
manual_parameters=[
ASSET_ID_PARAM,
VERSIONS_DANDISET_PK_PARAM,
VERSIONS_VERSION_PARAM,
],
responses={
200: None, # This disables the auto-generated 200 response
301: 'Redirect to object store',
},
)
@action(detail=True, methods=['GET'])
def download(self, *args, **kwargs):
return super().download(*args, **kwargs)
# Remaining actions
@swagger_auto_schema(
responses={200: AssetValidationSerializer},
manual_parameters=[
ASSET_ID_PARAM,
VERSIONS_DANDISET_PK_PARAM,
VERSIONS_VERSION_PARAM,
],
operation_summary='Get any validation errors associated with an asset',
operation_description='',
)
@action(detail=True, methods=['GET'])
def validation(self, request, **kwargs):
asset = self.get_object()
serializer = AssetValidationSerializer(instance=asset)
return Response(serializer.data, status=status.HTTP_200_OK)
@swagger_auto_schema(
request_body=AssetRequestSerializer,
responses={
200: AssetDetailSerializer,
404: 'If a blob with the given checksum has not been validated',
},
manual_parameters=[VERSIONS_DANDISET_PK_PARAM, VERSIONS_VERSION_PARAM],
operation_summary='Create an asset.',
operation_description='Creates an asset and adds it to a specified version.\
User must be an owner of the specified dandiset.\
New assets can only be attached to draft versions.',
)
@method_decorator(
permission_required_or_403('owner', (Dandiset, 'pk', 'versions__dandiset__pk'))
)
def create(self, request, versions__dandiset__pk, versions__version):
version: Version = get_object_or_404(
Version.objects.select_related('dandiset'),
dandiset=versions__dandiset__pk,
version=versions__version,
)
if version.dandiset.unembargo_in_progress:
raise DandisetUnembargoInProgressError
serializer = AssetRequestSerializer(data=self.request.data)
serializer.is_valid(raise_exception=True)
asset = add_asset_to_version(
user=request.user,
version=version,
asset_blob=serializer.get_blob(),
zarr_archive=serializer.get_zarr_archive(),
metadata=serializer.validated_data['metadata'],
)
serializer = AssetDetailSerializer(instance=asset)
return Response(serializer.data, status=status.HTTP_200_OK)
@swagger_auto_schema(
request_body=AssetRequestSerializer,
responses={200: AssetDetailSerializer},
manual_parameters=[VERSIONS_DANDISET_PK_PARAM, VERSIONS_VERSION_PARAM],
operation_summary='Update the metadata of an asset.',
operation_description='User must be an owner of the associated dandiset.\
Only draft versions can be modified.',
)
@method_decorator(
permission_required_or_403('owner', (Dandiset, 'pk', 'versions__dandiset__pk'))
)
def update(self, request, versions__dandiset__pk, versions__version, **kwargs):
"""Update the metadata of an asset."""
version: Version = get_object_or_404(
Version.objects.select_related('dandiset'),
dandiset__pk=versions__dandiset__pk,
version=versions__version,
)
if version.version != 'draft':
raise DraftDandisetNotModifiableError
if version.dandiset.unembargo_in_progress:
raise DandisetUnembargoInProgressError
serializer = AssetRequestSerializer(data=self.request.data)
serializer.is_valid(raise_exception=True)
# Lock asset for update
with transaction.atomic():
locked_asset = get_object_or_404(
version.assets.select_for_update(), id=self.get_object().id
)
asset, _ = change_asset(
user=request.user,
asset=locked_asset,
version=version,
new_asset_blob=serializer.get_blob(),
new_zarr_archive=serializer.get_zarr_archive(),
new_metadata=serializer.validated_data['metadata'],
)
serializer = AssetDetailSerializer(instance=asset)
return Response(serializer.data, status=status.HTTP_200_OK)
@method_decorator(
permission_required_or_403('owner', (Dandiset, 'pk', 'versions__dandiset__pk'))
)
@swagger_auto_schema(
manual_parameters=[VERSIONS_DANDISET_PK_PARAM, VERSIONS_VERSION_PARAM],
operation_summary='Remove an asset from a version.',
operation_description='Assets are never deleted, only disassociated from a version.\
Only draft versions can be modified.',
)
def destroy(self, request, versions__dandiset__pk, versions__version, **kwargs):
version = get_object_or_404(
Version.objects.select_related('dandiset'),
dandiset__pk=versions__dandiset__pk,
version=versions__version,
)
if version.dandiset.unembargo_in_progress:
raise DandisetUnembargoInProgressError
# Lock asset for delete
with transaction.atomic():
locked_asset = get_object_or_404(
version.assets.select_for_update(), id=self.get_object().id
)
remove_asset_from_version(user=request.user, asset=locked_asset, version=version)
return Response(None, status=status.HTTP_204_NO_CONTENT)
@swagger_auto_schema(query_serializer=AssetListSerializer, responses={200: AssetSerializer})
def list(self, request, *args, **kwargs):
# Manually call this to ensure user is authorized
self.raise_if_unauthorized()
serializer = AssetListSerializer(data=request.query_params)
serializer.is_valid(raise_exception=True)
# Retrieve version first and then fetch assets, to remove a join
version = Version.objects.get(
dandiset__pk=self.kwargs['versions__dandiset__pk'],
version=self.kwargs['versions__version'],
)
# Apply filtering from included filter class first
asset_queryset = self.filter_queryset(version.assets.all())
# Must do glob pattern matching before pagination
glob_pattern: str | None = serializer.validated_data.get('glob')
if glob_pattern is not None:
# Escape special characters in the glob pattern. This is a security precaution taken
# since we are using postgres' regex search. A malicious user who knows this could
# include a regex as part of the glob expression, which postgres would happily parse
# and use if it's not escaped.
glob_pattern = f'^{re.escape(glob_pattern)}$'
asset_queryset = asset_queryset.filter(path__iregex=glob_pattern.replace('\\*', '.*'))
# Retrieve just the first N asset IDs, and use them for pagination
# Use custom pagination class to reduce unnecessary counts of assets
paginator = LazyPagination()
qs = asset_queryset.values_list('id', flat=True)
page_of_asset_ids = paginator.paginate_queryset(qs, request=self.request, view=self)
# Not sure when the page is ever None, but this condition is checked for compatibility with
# the original implementation: https://github.com/encode/django-rest-framework/blob/f4194c4684420ac86485d9610adf760064db381f/rest_framework/mixins.py#L37-L46
# This is checked here since the query can't continue if the page is `None` anyway
if page_of_asset_ids is None:
serializer = self.get_serializer(Asset.objects.none(), many=True)
return Response(serializer.data)
# Now we can retrieve the actual fully joined rows using the limited number of assets we're
# going to return
queryset = self.filter_queryset(
Asset.objects.filter(id__in=page_of_asset_ids).select_related('blob', 'zarr')
)
# Must apply this to the main queryset, since it affects the data returned
include_metadata = serializer.validated_data['metadata']
if not include_metadata:
queryset = queryset.defer('metadata')
# Paginate and return
serializer = self.get_serializer(queryset, many=True, metadata=include_metadata)
return paginator.get_paginated_response(serializer.data)
@swagger_auto_schema(
query_serializer=AssetPathsQueryParameterSerializer,
responses={200: AssetPathsSerializer(many=True)},
)
@action(detail=False, methods=['GET'], filter_backends=[])
def paths(self, request, versions__dandiset__pk, versions__version, **kwargs):
"""
Return the unique files/directories that directly reside under the specified path.
The specified path must be a folder; it either must end in a slash or
(to refer to the root folder) must be the empty string.
"""
query_serializer = AssetPathsQueryParameterSerializer(data=self.request.query_params)
query_serializer.is_valid(raise_exception=True)
# Permission check
self.raise_if_unauthorized()
# Fetch version
version = get_object_or_404(
Version,
dandiset__pk=versions__dandiset__pk,
version=versions__version,
)
# Fetch child paths
path: str = query_serializer.validated_data['path_prefix']
children_paths = search_asset_paths(path, version)
if children_paths is None:
raise NotFound('Specified path not found.')
# Paginate and return
page = self.paginate_queryset(children_paths)
if page is not None:
serializer = AssetPathsSerializer(page, many=True)
return self.get_paginated_response(serializer.data)
serializer = AssetPathsSerializer(children_paths, many=True)
return Response(serializer.data)
# TODO: add create to forge an asset from a validation