A perl script to split a BLAST search into multiple jobs for HTCondor
#Synopsis blast-condor.pl -b blastcmd -q in.fa -d db.blastdb [-j jobs]
#Description --blastcommand, -b Full path to the blast program to run (blastn, blastx, etc.)
--query, -q FASTA file with query sequences
--database, -d BLAST database file
--jobs, -j Number of jobs to generate
--transfer-off, -t Don't use Condor's file transfer mechanism
--arguments, -a Additional blast command line parameters
--man, -m Show this help
#Author Erik van den Bergh