{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":223113834,"defaultBranch":"master","name":"nanovar","ownerLogin":"cytham","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2019-11-21T07:27:11.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/25361260?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1722093284.0","currentOid":""},"activityList":{"items":[{"before":"d218a27f3ed6ea298b48d87b852a09e29c462544","after":"bff4b560b62b4261790aeb5d183d5f45b1ca0193","ref":"refs/heads/v1.7.1-dev","pushedAt":"2024-07-30T17:35:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix for #89","shortMessageHtmlLink":"Fix for #89"}},{"before":"658e4bd6127b7caf10c82780da7d0bb0ddd3699a","after":"d218a27f3ed6ea298b48d87b852a09e29c462544","ref":"refs/heads/v1.7.1-dev","pushedAt":"2024-07-27T16:22:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix log scale","shortMessageHtmlLink":"Fix log scale"}},{"before":"f2c79b31572db4ddb9dc4d0953a4dcbb41397425","after":"658e4bd6127b7caf10c82780da7d0bb0ddd3699a","ref":"refs/heads/v1.7.1-dev","pushedAt":"2024-07-27T16:07:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix log scale","shortMessageHtmlLink":"Fix log scale"}},{"before":"f2c79b31572db4ddb9dc4d0953a4dcbb41397425","after":null,"ref":"refs/heads/v1.7.1","pushedAt":"2024-07-27T15:14:44.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"}},{"before":null,"after":"f2c79b31572db4ddb9dc4d0953a4dcbb41397425","ref":"refs/heads/v1.7.1-dev","pushedAt":"2024-07-27T15:14:43.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix mm,st path log","shortMessageHtmlLink":"Fix mm,st path log"}},{"before":"79522fc842b32a1d08051d6f90c4d6a3051f7665","after":"f2c79b31572db4ddb9dc4d0953a4dcbb41397425","ref":"refs/heads/v1.7.1","pushedAt":"2024-07-27T15:09:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix mm,st path log","shortMessageHtmlLink":"Fix mm,st path log"}},{"before":"728a265a5ab692b9f6506cde5d368ab050a0773a","after":"79522fc842b32a1d08051d6f90c4d6a3051f7665","ref":"refs/heads/v1.7.1","pushedAt":"2024-07-27T14:58:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Correct typo","shortMessageHtmlLink":"Correct typo"}},{"before":"aacae79fc70552bb93f6d97ac10ddb293a45d215","after":"728a265a5ab692b9f6506cde5d368ab050a0773a","ref":"refs/heads/v1.7.1","pushedAt":"2024-07-27T14:41:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Include minimap2,samtools path in log","shortMessageHtmlLink":"Include minimap2,samtools path in log"}},{"before":"4f0db73c02c5ee4ddaa56357b32d22c42c16519b","after":"aacae79fc70552bb93f6d97ac10ddb293a45d215","ref":"refs/heads/v1.7.1","pushedAt":"2024-07-27T14:39:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Include version in stdout logs","shortMessageHtmlLink":"Include version in stdout logs"}},{"before":"64396606a5673aab7984030f94aa6835ca4e07ba","after":"4f0db73c02c5ee4ddaa56357b32d22c42c16519b","ref":"refs/heads/v1.7.1","pushedAt":"2024-07-27T14:37:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Remove inter-ins alt seq","shortMessageHtmlLink":"Remove inter-ins alt seq"}},{"before":null,"after":"64396606a5673aab7984030f94aa6835ca4e07ba","ref":"refs/heads/v1.7.1","pushedAt":"2024-07-27T14:33:49.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix alt seq bug","shortMessageHtmlLink":"Fix alt seq bug"}},{"before":"8a7c5cb92c74d6f3af08b1589cc14652fefbc6f3","after":"a9612a4f25aecbf99683f40a38de11770c5557c7","ref":"refs/heads/master","pushedAt":"2024-06-04T17:47:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"75b8bf5ff212aaeb5c165056870b4bf02f339013","after":"8a7c5cb92c74d6f3af08b1589cc14652fefbc6f3","ref":"refs/heads/master","pushedAt":"2024-06-04T17:46:24.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Add alt seq and cram support (#87)\n\n* Modify SV ID\r\n\r\nnv_SV?-????? to NV.DEL.SV?-?????\r\n\r\n* Integrate SV support file generation\r\n\r\n* Change lead read\r\n\r\nLead read selection now based on median SV size rather than largest SV size\r\n\r\n* Removed ins_size_mod\r\n\r\n* Create nv_alt_seq.py\r\n\r\n* Add alt_seq\r\n\r\n* Add ins_seq\r\n\r\n* Add ins strandness\r\n\r\n* Add alt_seq\r\n\r\n* bump v1.7.0\r\n\r\n* Fix wkdir error\r\n\r\n* Fix alt seq var error\r\n\r\n* Fix chr2 bug\r\n\r\n* Fix ALT parsing\r\n\r\n* Fix main sv bug\r\n\r\n* Fix median size\r\n\r\n* Fix key error\r\n\r\n* Fix bed <0\r\n\r\n* Fix bed <0\r\n\r\n* Fix bed <0\r\n\r\n* Fix bed <0\r\n\r\n* Add cram\r\n\r\n* Add refpath for cram\r\n\r\n* Fix cram ref\r\n\r\n* Fix pickle\r\n\r\n* Update changelog","shortMessageHtmlLink":"Add alt seq and cram support (#87)"}},{"before":"57dfd699006c549bd395e8bf9796b24470c9c526","after":"48ee621905c99698e47163592fa6da4f3926748d","ref":"refs/heads/add-alt-seq","pushedAt":"2024-06-04T17:45:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Update changelog","shortMessageHtmlLink":"Update changelog"}},{"before":"4a69d161a6dfa35de520947a93cae21fe4e4140d","after":"57dfd699006c549bd395e8bf9796b24470c9c526","ref":"refs/heads/add-alt-seq","pushedAt":"2024-06-04T15:55:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix pickle","shortMessageHtmlLink":"Fix pickle"}},{"before":"9c70b64db707a22e9932e0e60d9ea007bfe18509","after":"4a69d161a6dfa35de520947a93cae21fe4e4140d","ref":"refs/heads/add-alt-seq","pushedAt":"2024-06-03T14:24:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix cram ref","shortMessageHtmlLink":"Fix cram ref"}},{"before":"56953b618f3c6a84dea8beaf4f7b64f00f430fb8","after":"9c70b64db707a22e9932e0e60d9ea007bfe18509","ref":"refs/heads/add-alt-seq","pushedAt":"2024-06-02T10:09:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Add refpath for cram","shortMessageHtmlLink":"Add refpath for cram"}},{"before":"f1cbc2118555b52cc1d43d1a4ef07328722d1170","after":"56953b618f3c6a84dea8beaf4f7b64f00f430fb8","ref":"refs/heads/add-alt-seq","pushedAt":"2024-06-02T09:27:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Add cram","shortMessageHtmlLink":"Add cram"}},{"before":"5f8922a233ab15a3e8366b082738ae464c43b281","after":"f1cbc2118555b52cc1d43d1a4ef07328722d1170","ref":"refs/heads/add-alt-seq","pushedAt":"2024-06-02T01:15:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix bed <0","shortMessageHtmlLink":"Fix bed <0"}},{"before":"22b57b4ed4da54f9f3513ac83aab6bb3c6084bb7","after":"5f8922a233ab15a3e8366b082738ae464c43b281","ref":"refs/heads/add-alt-seq","pushedAt":"2024-06-01T14:38:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix bed <0","shortMessageHtmlLink":"Fix bed <0"}},{"before":"c20772562782cd94cbbb993677eaf6408288b1f9","after":"22b57b4ed4da54f9f3513ac83aab6bb3c6084bb7","ref":"refs/heads/add-alt-seq","pushedAt":"2024-06-01T10:58:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix bed <0","shortMessageHtmlLink":"Fix bed <0"}},{"before":"e0fc7ebd73e8b3fcc30831a773ffe17c25adefae","after":"c20772562782cd94cbbb993677eaf6408288b1f9","ref":"refs/heads/add-alt-seq","pushedAt":"2024-06-01T10:57:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix bed <0","shortMessageHtmlLink":"Fix bed <0"}},{"before":"42ca3ee2b03066a32d6c12a9c098c5dd32e028e2","after":"e0fc7ebd73e8b3fcc30831a773ffe17c25adefae","ref":"refs/heads/add-alt-seq","pushedAt":"2024-06-01T08:17:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix key error","shortMessageHtmlLink":"Fix key error"}},{"before":"da6242eb7b8a5ab660e494e8c872ab20195dd971","after":"42ca3ee2b03066a32d6c12a9c098c5dd32e028e2","ref":"refs/heads/add-alt-seq","pushedAt":"2024-05-30T10:03:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix median size","shortMessageHtmlLink":"Fix median size"}},{"before":"5584814995564ed9d76a94d88c23aa33fedc5960","after":"da6242eb7b8a5ab660e494e8c872ab20195dd971","ref":"refs/heads/add-alt-seq","pushedAt":"2024-05-29T14:39:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix main sv bug","shortMessageHtmlLink":"Fix main sv bug"}},{"before":"8b9336d112195b273f3370e9eb6105fe1ee96b37","after":"5584814995564ed9d76a94d88c23aa33fedc5960","ref":"refs/heads/add-alt-seq","pushedAt":"2024-05-28T16:29:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix ALT parsing","shortMessageHtmlLink":"Fix ALT parsing"}},{"before":"91d82e3c11179a972fb4359602d126ea65b01a62","after":"8b9336d112195b273f3370e9eb6105fe1ee96b37","ref":"refs/heads/add-alt-seq","pushedAt":"2024-05-28T16:26:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix chr2 bug","shortMessageHtmlLink":"Fix chr2 bug"}},{"before":"fad9c5b6303aca0f8944ba985d05abe9e4c1fe70","after":"91d82e3c11179a972fb4359602d126ea65b01a62","ref":"refs/heads/add-alt-seq","pushedAt":"2024-05-28T16:13:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix alt seq var error","shortMessageHtmlLink":"Fix alt seq var error"}},{"before":"c1e91b5978c9396491c032e7c0fe2c38cf29cdfe","after":"fad9c5b6303aca0f8944ba985d05abe9e4c1fe70","ref":"refs/heads/add-alt-seq","pushedAt":"2024-05-28T16:09:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"Fix wkdir error","shortMessageHtmlLink":"Fix wkdir error"}},{"before":"abb0fa7f45e6384dfa932e8a012fa68272103822","after":"c1e91b5978c9396491c032e7c0fe2c38cf29cdfe","ref":"refs/heads/add-alt-seq","pushedAt":"2024-05-28T16:08:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cytham","name":"Cheng Yong Tham","path":"/cytham","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25361260?s=80&v=4"},"commit":{"message":"bump v1.7.0","shortMessageHtmlLink":"bump v1.7.0"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEjUJ66gA","startCursor":null,"endCursor":null}},"title":"Activity ยท cytham/nanovar"}