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TNER_example_input_file.txt
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TNER_example_input_file.txt
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CHR POSITION DEPTH REF R+ R- A+ A- C+ C- T+ T- G+ G-
chr1 23836372 7970 T 5562 2407 0 0 1 0 0 0 0 0
chr1 23836373 8050 C 5634 2415 1 0 0 0 0 0 0 0
chr1 23836374 8083 A 5611 2472 0 0 0 0 0 0 0 0
chr1 23836375 8116 A 5581 2535 0 0 0 0 0 0 0 0
chr1 23836376 8176 T 5492 2684 0 0 0 0 0 0 0 0
chr1 23836377 8200 T 5505 2692 2 1 0 0 0 0 0 0
chr1 23836378 8239 A 5536 2703 0 0 0 0 0 0 0 0
chr1 23836379 8262 A 5529 2733 0 0 0 0 0 0 0 0
chr1 23836380 8302 T 5564 2738 0 0 0 0 0 0 0 0
chr1 23836381 8371 C 5620 2750 0 0 0 0 1 0 0 0
chr1 23836382 8414 A 5614 2800 0 0 0 0 0 0 0 0
chr1 23836383 8529 A 5694 2835 0 0 0 0 0 0 0 0
chr1 23836384 8577 C 5721 2856 0 0 0 0 0 0 0 0
chr1 23836385 8572 A 5711 2861 0 0 0 0 0 0 0 0
chr1 23836386 8624 G 5760 2864 0 0 0 0 0 0 0 0
chr1 23836387 8653 G 5751 2901 0 0 0 0 1 0 0 0
chr1 23836388 8594 T 5697 2897 0 0 0 0 0 0 0 0
chr1 23836389 8819 C 5894 2925 0 0 0 0 0 0 0 0
chr1 23836390 8977 C 6023 2954 0 0 0 0 0 0 0 0
chr1 23836391 9205 C 6220 2985 0 0 0 0 0 0 0 0
chr1 23836392 9282 C 6210 3072 0 0 0 0 0 0 0 0
chr1 23836393 9311 A 6181 3128 0 0 0 0 0 1 1 0
chr1 23836394 9331 A 6113 3215 0 0 1 0 0 0 2 0
chr1 23836395 9386 G 6160 3225 1 0 0 0 0 0 0 0
chr1 23836396 9379 G 6144 3235 0 0 0 0 0 0 0 0
chr1 23836397 9388 T 6092 3296 0 0 0 0 0 0 0 0
chr1 23836398 9565 C 6262 3302 0 0 0 0 1 0 0 0
chr1 23836399 9576 G 6253 3322 1 0 0 0 0 0 0 0
chr1 23836400 9730 T 6333 3396 1 0 0 0 0 0 0 0
chr1 23836401 9745 A 6307 3438 0 0 0 0 0 0 0 0
chr1 23836402 9867 G 6432 3435 0 0 0 0 0 0 0 0
chr1 23836403 9889 G 6444 3445 0 0 0 0 0 0 0 0
chr1 23836404 9963 A 6532 3431 0 0 0 0 0 0 0 0
chr1 23836405 10044 G 6552 3490 0 0 0 0 1 1 0 0
chr1 23836406 9977 T 6430 3540 0 0 4 3 0 0 0 0
chr1 23836407 10163 C 6606 3556 0 0 0 0 1 0 0 0
chr1 23836408 10338 G 6751 3582 4 0 0 0 0 1 0 0
chr1 23836409 10315 A 6645 3670 0 0 0 0 0 0 0 0
chr1 23836410 10343 A 6662 3680 0 0 0 0 0 0 0 1
chr1 23836411 10376 G 6684 3691 0 1 0 0 0 0 0 0
chr1 23836412 10370 A 6656 3713 0 0 0 0 0 0 0 1
chr1 23836413 10441 G 6708 3733 0 0 0 0 0 0 0 0
chr1 23836414 10446 A 6636 3810 0 0 0 0 0 0 0 0
chr1 23836415 10458 T 6492 3966 0 0 0 0 0 0 0 0
chr1 23836416 10536 C 6558 3976 0 0 0 0 1 1 0 0
chr1 23836417 10535 G 6547 3981 7 0 0 0 0 0 0 0
chr1 23836418 10555 C 6537 4016 0 0 0 0 1 1 0 0
chr1 23836419 10485 T 6489 3996 0 0 0 0 0 0 0 0
chr1 23836420 10484 G 6411 4072 1 0 0 0 0 0 0 0
chr1 23836421 10403 A 6374 4028 0 0 0 0 0 0 1 0
chr1 23836422 10342 T 6359 3983 0 0 0 0 0 0 0 0
chr1 23836423 10331 G 6317 4011 0 0 0 0 3 0 0 0
chr1 23836424 10234 C 6296 3937 0 0 0 0 0 1 0 0
chr1 23836425 10239 C 6313 3925 0 0 0 0 0 1 0 0
chr1 23836426 10207 C 6247 3957 2 0 0 0 1 0 0 0
chr1 23836427 10006 T 6177 3828 0 0 1 0 0 0 0 0
chr1 23836428 9985 C 6179 3806 0 0 0 0 0 0 0 0
chr1 23836429 9926 A 6087 3839 0 0 0 0 0 0 0 0
chr1 23836430 9992 C 6148 3842 0 0 0 0 1 1 0 0
chr1 23836431 9941 C 6089 3851 0 0 0 0 1 0 0 0
chr1 23836432 9933 C 6095 3837 0 0 0 0 1 0 0 0
chr1 23836433 9875 G 6074 3800 0 1 0 0 0 0 0 0
chr1 23836434 9877 C 6089 3787 0 0 0 0 0 1 0 0
chr1 23836435 9887 C 6062 3823 0 0 0 0 2 0 0 0
chr1 23836436 9719 T 5990 3728 0 0 1 0 0 0 0 0
chr1 23836437 9826 C 6091 3735 0 0 0 0 0 0 0 0
chr1 23836438 9849 C 6091 3757 0 0 0 0 1 0 0 0
chr1 23836439 9690 A 6027 3662 0 0 0 0 0 0 1 0
chr1 23836440 9629 A 5999 3630 0 0 0 0 0 0 0 0
chr1 23836441 9634 G 5931 3702 0 1 0 0 0 0 0 0
chr1 23836442 9616 C 5905 3709 0 0 0 0 1 1 0 0
chr1 23836443 9580 C 5875 3704 0 0 0 0 1 0 0 0
chr1 23836444 9618 C 5875 3741 0 0 0 0 2 0 0 0
chr1 23836445 9604 C 5896 3707 0 0 0 0 1 0 0 0
chr1 23836446 9561 A 5860 3701 0 0 0 0 0 0 0 0
chr1 23836447 9509 C 5849 3659 0 0 0 0 0 1 0 0
chr1 23836448 9401 A 5725 3673 0 0 0 0 1 1 0 1
chr1 23836449 9360 G 5726 3633 1 0 0 0 0 0 0 0
chr1 23836450 9339 G 5617 3721 0 0 0 0 1 0 0 0
chr1 23836451 9095 T 5509 3585 0 0 1 0 0 0 0 0
chr1 23836452 9062 A 5449 3613 0 0 0 0 0 0 0 0
chr1 23836453 9064 G 5426 3638 0 0 0 0 0 0 0 0
chr1 23836454 8981 T 5373 3608 0 0 0 0 0 0 0 0
chr1 23836455 8968 C 5356 3611 0 0 0 0 1 0 0 0
chr1 23836456 8988 G 5239 3748 1 0 0 0 0 0 0 0
chr1 23836457 8874 T 5193 3681 0 0 0 0 0 0 0 0
chr1 23836458 8957 C 5267 3690 0 0 0 0 0 0 0 0
chr1 23836459 8920 C 5243 3676 0 1 0 0 0 0 0 0
chr1 23836460 8579 T 5099 3480 0 0 0 0 0 0 0 0
chr1 23836461 8590 G 5114 3475 0 0 0 0 1 0 0 0
chr1 23836462 8580 G 5073 3505 2 0 0 0 0 0 0 0
chr1 23836463 8474 T 5030 3444 0 0 0 0 0 0 0 0
chr1 23836464 8483 C 5026 3457 0 0 0 0 0 0 0 0
chr1 23836465 8444 C 4901 3541 0 0 0 0 1 1 0 0
chr1 23836466 8389 A 4846 3543 0 0 0 0 0 0 0 0
chr1 23836467 8305 A 4819 3486 0 0 0 0 0 0 0 0
chr1 23836468 8302 G 4796 3504 0 0 0 0 1 1 0 0
chr1 23836469 8275 G 4758 3515 1 0 0 0 0 1 0 0
chr1 23836470 8152 A 4702 3450 0 0 0 0 0 0 0 0
chr1 23836471 8140 T 4677 3462 0 0 0 0 0 0 1 0
chr1 23836472 8155 G 4681 3474 0 0 0 0 0 0 0 0
chr1 23836473 8139 G 4640 3498 1 0 0 0 0 0 0 0
chr1 23836474 8090 G 4617 3472 1 0 0 0 0 0 0 0
chr1 23836475 7981 G 4520 3461 0 0 0 0 0 0 0 0
chr1 23836476 7690 A 4348 3342 0 0 0 0 0 0 0 0
chr1 23836477 7716 G 4336 3379 0 0 0 0 0 1 0 0
chr1 23836478 7666 A 4285 3381 0 0 0 0 0 0 0 0
chr1 23836479 7649 A 4279 3369 0 0 1 0 0 0 0 0
chr1 23836480 7684 G 4268 3415 0 1 0 0 0 0 0 0
chr1 23836481 7683 C 4265 3415 0 0 0 0 2 1 0 0
chr1 23836482 7590 T 4212 3375 2 0 1 0 0 0 0 0
chr1 23836483 7589 G 4176 3413 0 0 0 0 0 0 0 0
chr1 23836484 7569 A 4130 3439 0 0 0 0 0 0 0 0
chr1 23836485 7559 T 4134 3425 0 0 0 0 0 0 0 0
chr1 23836486 7566 C 4097 3468 0 0 0 0 0 0 1 0
chr1 23836487 7540 A 4031 3507 0 0 0 0 2 0 0 0
chr1 23836488 7560 G 4010 3550 0 0 0 0 0 0 0 0
chr1 23836489 7502 A 3922 3579 0 0 0 0 1 0 0 0
chr1 23836490 7473 G 3906 3567 0 0 0 0 0 0 0 0
chr1 23836491 7386 G 3858 3527 0 0 0 0 1 0 0 0
chr1 23836492 7273 G 3791 3481 0 1 0 0 0 0 0 0
chr1 23836493 7179 G 3741 3436 0 1 0 0 0 1 0 0
chr1 23836494 7001 A 3644 3357 0 0 0 0 0 0 0 0
chr1 23836495 7069 G 3674 3394 0 0 0 0 1 0 0 0
chr1 23836496 7052 C 3633 3418 0 0 0 0 0 1 0 0
chr1 23836497 6981 T 3590 3391 0 0 0 0 0 0 0 0
chr1 23836498 7044 G 3657 3384 3 0 0 0 0 0 0 0
chr1 23836499 7025 C 3659 3365 0 0 0 0 0 1 0 0
chr1 23836500 6892 A 3562 3330 0 0 0 0 0 0 0 0
chr1 23836501 6980 C 3697 3282 0 0 0 0 0 1 0 0
chr1 23836502 7007 G 3719 3287 1 0 0 0 0 0 0 0
chr1 23836503 7069 C 3770 3298 0 0 0 0 0 1 0 0
chr1 23836504 7068 C 3761 3307 0 0 0 0 0 0 0 0
chr1 23836505 6977 A 3725 3252 0 0 0 0 0 0 0 0
chr1 23836506 6910 G 3711 3199 0 0 0 0 0 0 0 0
chr1 23836507 6896 G 3703 3192 1 0 0 0 0 0 0 0
chr1 23836508 6864 G 3651 3213 0 0 0 0 0 0 0 0
chr1 23836509 6644 T 3534 3110 0 0 0 0 0 0 0 0
chr1 23836510 6726 C 3617 3108 0 0 0 0 0 1 0 0
chr1 23836511 6770 G 3653 3114 2 0 0 0 1 0 0 0
chr1 23836512 6707 G 3655 3051 0 1 0 0 0 0 0 0
chr1 23836513 6695 G 3640 3054 0 0 0 0 1 0 0 0
chr1 23836514 6574 G 3603 2971 0 0 0 0 0 0 0 0
chr1 23836515 6286 A 3466 2820 0 0 0 0 0 0 0 0
chr1 23836516 6289 C 3480 2808 0 0 0 0 1 0 0 0
chr1 23836517 6258 A 3459 2797 0 0 0 0 0 0 1 1
chr1 23836518 6247 G 3495 2752 0 0 0 0 0 0 0 0
chr1 23836519 6231 G 3490 2741 0 0 0 0 0 0 0 0
chr1 23836520 6044 A 3384 2660 0 0 0 0 0 0 0 0
chr1 23836521 6078 A 3400 2678 0 0 0 0 0 0 0 0
chr1 23836522 6089 C 3421 2668 0 0 0 0 0 0 0 0
chr1 23836523 6027 T 3390 2637 0 0 0 0 0 0 0 0
chr1 23836524 6062 G 3454 2607 1 0 0 0 0 0 0 0
chr1 23836525 6032 G 3443 2586 2 1 0 0 0 0 0 0
chr1 23836526 5931 T 3408 2523 0 0 0 0 0 0 0 0
chr1 23836527 6101 C 3576 2524 0 0 0 0 1 0 0 0
chr1 23836528 6123 C 3612 2508 2 0 0 0 0 1 0 0
chr1 23836529 6058 T 3614 2444 0 0 0 0 0 0 0 0
chr1 23836530 6131 C 3691 2440 0 0 0 0 0 0 0 0
chr1 23836531 6120 A 3700 2420 0 0 0 0 0 0 0 0
chr1 23836532 6108 G 3700 2406 0 0 0 0 2 0 0 0
chr1 23836533 6106 T 3688 2418 0 0 0 0 0 0 0 0
chr1 23836534 6100 C 3692 2408 0 0 0 0 0 0 0 0
chr1 23836535 6047 T 3677 2370 0 0 0 0 0 0 0 0
chr1 23836536 6088 G 3730 2357 1 0 0 0 0 0 0 0
chr1 23836537 6101 C 3757 2344 0 0 0 0 0 0 0 0
chr1 23836538 6071 T 3758 2313 0 0 0 0 0 0 0 0
chr1 23836539 6129 G 3810 2315 2 1 1 0 0 0 0 0
chr1 23836540 6128 C 3825 2300 0 0 0 0 3 0 0 0
chr1 23836541 5956 A 3745 2211 0 0 0 0 0 0 0 0
chr1 23836542 5927 G 3745 2180 1 0 0 0 0 1 0 0
chr1 23836543 5888 G 3728 2156 0 0 0 0 2 2 0 0
chr1 23836544 5775 A 3659 2116 0 0 0 0 0 0 0 0
chr1 23836545 5810 G 3665 2145 0 0 0 0 0 0 0 0
chr1 23836546 5730 T 3603 2127 0 0 0 0 0 0 0 0
chr1 23836547 5767 G 3648 2118 0 0 0 0 0 1 0 0
chr1 23836548 5722 G 3657 2065 0 0 0 0 0 0 0 0
chr1 23836549 5701 G 3641 2060 0 0 0 0 0 0 0 0
chr1 23836550 5526 T 3546 1979 1 0 0 0 0 0 0 0
chr1 23836551 5505 G 3537 1967 0 0 0 0 0 1 0 0
chr1 23836552 5393 C 3496 1893 0 0 0 0 0 4 0 0
chr1 23836553 5400 G 3511 1888 0 0 0 0 1 0 0 0
chr1 23836554 5390 G 3505 1882 2 0 0 0 0 1 0 0
chr1 23836555 5372 C 3504 1865 0 0 0 0 3 0 0 0
chr1 23836556 5185 A 3450 1735 0 0 0 0 0 0 0 0
chr1 23836557 5180 G 3452 1727 1 0 0 0 0 0 0 0
chr1 23836558 5186 C 3432 1754 0 0 0 0 0 0 0 0
chr1 23836559 5170 T 3422 1748 0 0 0 0 0 0 0 0
chr1 23836560 5229 C 3479 1750 0 0 0 0 0 0 0 0
chr1 23836561 5244 C 3480 1764 0 0 0 0 0 0 0 0
chr1 23836562 5198 A 3452 1746 0 0 0 0 0 0 0 0
chr1 23836563 5217 G 3456 1758 1 2 0 0 0 0 0 0
chr1 23836564 5177 C 3438 1737 0 0 0 0 1 1 0 0
chr1 23836565 5007 A 3372 1635 0 0 0 0 0 0 0 0
chr1 23836566 4960 G 3367 1593 0 0 0 0 0 0 0 0
chr1 23836567 4968 G 3362 1606 0 0 0 0 0 0 0 0
chr1 23836568 4919 C 3337 1580 0 0 0 0 2 0 0 0
chr1 23836569 4878 T 3191 1687 0 0 0 0 0 0 0 0
chr1 23836570 4883 G 3181 1702 0 0 0 0 0 0 0 0
chr1 23836571 4838 T 3159 1679 0 0 0 0 0 0 0 0
chr1 23836572 4834 C 3155 1679 0 0 0 0 0 0 0 0
chr1 23836573 8793 A 5639 3154 0 0 0 0 0 0 0 0
chr1 23836574 10277 G 6660 3616 0 0 0 1 0 0 0 0
chr1 23836575 11084 T 6199 4885 0 0 0 0 0 0 0 0
chr1 23836576 7654 A 4534 3118 0 0 1 0 0 0 0 1
chr1 23836577 10429 G 5481 4947 0 1 0 0 0 0 0 0
chr1 23836578 10506 C 5269 5235 0 0 0 0 1 1 0 0
chr1 23836579 9425 C 4785 4639 0 1 0 0 0 0 0 0
chr1 23836580 9453 T 5479 3974 0 0 0 0 0 0 0 0
chr1 23836581 9436 C 5166 4269 0 0 0 0 0 0 1 0
chr1 23836582 9110 C 5685 3425 0 0 0 0 0 0 0 0
chr1 23836583 9523 A 4992 4529 0 0 0 0 1 1 0 0
chr1 23836584 9002 A 5068 3933 0 0 1 0 0 0 0 0
chr1 23836585 9224 G 4832 4390 0 0 0 0 1 1 0 0
chr1 23836586 10064 G 5812 4252 0 0 0 0 0 0 0 0
chr1 23836587 10959 G 7558 3399 0 0 1 1 0 0 0 0
chr1 23836588 9890 G 6209 3681 0 0 0 0 0 0 0 0
chr1 23836589 9489 A 4958 4530 0 0 0 0 0 0 1 0
chr1 23836590 9089 C 5202 3887 0 0 0 0 0 0 0 0
chr1 23836591 9163 C 6122 3040 0 0 0 0 1 0 0 0
chr1 23836592 12416 A 8145 4270 0 0 0 0 0 0 0 1
chr1 23836593 10134 G 6500 3633 0 0 0 0 0 1 0 0
chr1 23836594 9509 G 6179 3330 0 0 0 0 0 0 0 0
chr1 23836595 9559 G 5139 4420 0 0 0 0 0 0 0 0
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chr1 23848546 7168 G 3566 3601 0 1 0 0 0 0 0 0
chr1 23848547 6618 G 3325 3293 0 0 0 0 0 0 0 0
chr1 23848548 6550 G 3298 3251 0 1 0 0 0 0 0 0
chr1 23850875 11330 T 6212 5118 0 0 0 0 0 0 0 0
chr1 23850876 10336 T 6557 3779 0 0 0 0 0 0 0 0
chr1 23850877 10007 T 6974 3033 0 0 0 0 0 0 0 0
chr1 23850878 9545 T 5147 4397 0 0 0 0 0 0 0 1
chr1 23850879 9633 G 5550 4042 0 0 0 0 39 2 0 0
chr1 23850880 10648 G 6160 4488 0 0 0 0 0 0 0 0
chr1 23850881 12070 G 7943 4127 0 0 0 0 0 0 0 0
chr1 23850882 9847 G 5146 4700 0 1 0 0 0 0 0 0
chr1 23850883 8609 C 5723 2883 0 0 0 0 2 1 0 0
chr1 23850884 9276 T 6063 3213 0 0 0 0 0 0 0 0
chr1 23850885 10258 G 6515 3743 0 0 0 0 0 0 0 0
chr1 23850886 9683 G 5991 3692 0 0 0 0 0 0 0 0
chr1 23850887 4805 G 2606 2199 0 0 0 0 0 0 0 0
chr1 23850888 4805 G 2605 2199 1 0 0 0 0 0 0 0
chr1 23850889 9822 A 6724 3083 0 0 0 0 0 0 15 0
chr1 23850890 9830 G 6491 3337 0 0 0 0 0 2 0 0
chr1 23850891 8628 G 5034 3591 1 2 0 0 0 0 0 0
chr1 23850892 9826 C 6521 3303 0 0 0 0 1 1 0 0
chr1 23850893 4969 C 2819 2150 0 0 0 0 0 0 0 0
chr1 23850894 10850 A 5662 5183 0 0 5 0 0 0 0 0
chr1 23850895 5016 T 2843 2173 0 0 0 0 0 0 0 0
chr1 23850896 5146 C 2940 2206 0 0 0 0 0 0 0 0
chr1 23850897 5168 C 2928 2240 0 0 0 0 0 0 0 0
chr1 23850898 5056 A 2837 2218 0 0 0 0 0 0 1 0
chr1 23850899 5355 C 3113 2241 0 0 0 0 1 0 0 0
chr1 23850900 5242 T 3003 2237 0 0 2 0 0 0 0 0
chr1 23850901 5413 C 3173 2240 0 0 0 0 0 0 0 0
chr1 23850902 5434 T 3206 2227 0 0 0 1 0 0 0 0
chr1 23850903 5484 G 3258 2226 0 0 0 0 0 0 0 0
chr1 23850904 5484 A 3265 2219 0 0 0 0 0 0 0 0
chr1 23850905 5492 T 3304 2188 0 0 0 0 0 0 0 0
chr1 23850906 5488 G 3278 2207 3 0 0 0 0 0 0 0
chr1 23850907 5488 C 3267 2217 0 0 0 0 3 1 0 0
chr1 23850908 5552 A 3366 2186 0 0 0 0 0 0 0 0
chr1 23850909 5717 C 3528 2189 0 0 0 0 0 0 0 0
chr1 23850910 5683 T 3510 2172 0 0 0 1 0 0 0 0
chr1 23850911 5722 T 3580 2142 0 0 0 0 0 0 0 0
chr1 23850912 6079 C 3928 2149 0 0 0 0 2 0 0 0
chr1 23850913 6242 C 4118 2124 0 0 0 0 0 0 0 0
chr1 23850914 6577 C 4464 2113 0 0 0 0 0 0 0 0
chr1 23850915 6643 C 4526 2115 2 0 0 0 0 0 0 0
chr1 23850916 6628 T 4538 2090 0 0 0 0 0 0 0 0
chr1 23850917 6835 T 4749 2086 0 0 0 0 0 0 0 0