From b455d80bfa5ed14332a929b28f1768413ca5b5c9 Mon Sep 17 00:00:00 2001
From: Chirag Parsania <chirag.parsania@gmail.com>
Date: Tue, 22 Oct 2024 11:11:23 +1100
Subject: [PATCH] bug fix

---
 R/chip_related.R                               | 7 ++++---
 docs/reference/make_enriched_heatmap_list.html | 7 ++++++-
 man/make_enriched_heatmap_list.Rd              | 5 ++++-
 3 files changed, 14 insertions(+), 5 deletions(-)

diff --git a/R/chip_related.R b/R/chip_related.R
index 6d78cc5..b3474ae 100644
--- a/R/chip_related.R
+++ b/R/chip_related.R
@@ -289,7 +289,7 @@ import_topn_bed_features <- function(bed_feature_file,topn = 5000, center = TRUE
 #' @param heatmap_axis_name_rot internally passed to \code{axis_name_rot} argument of [EnrichedHeatmap::EnrichedHeatmap()].
 #' @param heatmap_axis_name_gp internally passed to \code{axis_name_gp} argument of [EnrichedHeatmap::EnrichedHeatmap()].
 #' @param heatmap_border internally passed to \code{border} argument of [EnrichedHeatmap::EnrichedHeatmap()].
-#'
+#' @param ... 	Other arguments passed to \code{...} argument of [EnrichedHeatmap::EnrichedHeatmap()].
 #' @return a HeatmapList.
 #' @export
 #'
@@ -313,7 +313,8 @@ make_enriched_heatmap_list <- function(x,
                                        heatmap_axis_name= c("-3KB","Summit","+3KB"),
                                        heatmap_axis_name_rot = 0,
                                        heatmap_axis_name_gp = gpar(fontsize = 10),
-                                       heatmap_border = TRUE){
+                                       heatmap_border = TRUE,
+                                       ...){
 
 
   # validate x
@@ -401,7 +402,7 @@ make_enriched_heatmap_list <- function(x,
                                                                             pos_line_gp = heatmap_pos_line_gp,
                                                                             axis_name_rot = heatmap_axis_name_rot,
                                                                             border = heatmap_border, use_raster = TRUE ,
-                                                                            split = peak_clust$clust))
+                                                                            split = peak_clust$clust,...))
 
 
 
diff --git a/docs/reference/make_enriched_heatmap_list.html b/docs/reference/make_enriched_heatmap_list.html
index 8037924..8776417 100644
--- a/docs/reference/make_enriched_heatmap_list.html
+++ b/docs/reference/make_enriched_heatmap_list.html
@@ -64,7 +64,8 @@ <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage">
 <span>  heatmap_axis_name <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"-3KB"</span>, <span class="st">"Summit"</span>, <span class="st">"+3KB"</span><span class="op">)</span>,</span>
 <span>  heatmap_axis_name_rot <span class="op">=</span> <span class="fl">0</span>,</span>
 <span>  heatmap_axis_name_gp <span class="op">=</span> <span class="fu">gpar</span><span class="op">(</span>fontsize <span class="op">=</span> <span class="fl">10</span><span class="op">)</span>,</span>
-<span>  heatmap_border <span class="op">=</span> <span class="cn">TRUE</span></span>
+<span>  heatmap_border <span class="op">=</span> <span class="cn">TRUE</span>,</span>
+<span>  <span class="va">...</span></span>
 <span><span class="op">)</span></span></code></pre></div>
     </div>
 
@@ -130,6 +131,10 @@ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#argumen
 <dt>heatmap_border</dt>
 <dd><p>internally passed to <code>border</code> argument of <code><a href="https://rdrr.io/pkg/EnrichedHeatmap/man/EnrichedHeatmap.html" class="external-link">EnrichedHeatmap::EnrichedHeatmap()</a></code>.</p></dd>
 
+
+<dt>...</dt>
+<dd><p>Other arguments passed to <code>...</code> argument of <code><a href="https://rdrr.io/pkg/EnrichedHeatmap/man/EnrichedHeatmap.html" class="external-link">EnrichedHeatmap::EnrichedHeatmap()</a></code>.</p></dd>
+
 </dl></div>
     <div class="section level2">
     <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
diff --git a/man/make_enriched_heatmap_list.Rd b/man/make_enriched_heatmap_list.Rd
index 53a32bb..ca83414 100644
--- a/man/make_enriched_heatmap_list.Rd
+++ b/man/make_enriched_heatmap_list.Rd
@@ -20,7 +20,8 @@ make_enriched_heatmap_list(
   heatmap_axis_name = c("-3KB", "Summit", "+3KB"),
   heatmap_axis_name_rot = 0,
   heatmap_axis_name_gp = gpar(fontsize = 10),
-  heatmap_border = TRUE
+  heatmap_border = TRUE,
+  ...
 )
 }
 \arguments{
@@ -54,6 +55,8 @@ Default \code{circlize::colorRamp2(breaks = c(0,0.5,1),colors = c('#fee6ce','#e6
 \item{heatmap_axis_name_gp}{internally passed to \code{axis_name_gp} argument of \code{\link[EnrichedHeatmap:EnrichedHeatmap]{EnrichedHeatmap::EnrichedHeatmap()}}.}
 
 \item{heatmap_border}{internally passed to \code{border} argument of \code{\link[EnrichedHeatmap:EnrichedHeatmap]{EnrichedHeatmap::EnrichedHeatmap()}}.}
+
+\item{...}{Other arguments passed to \code{...} argument of \code{\link[EnrichedHeatmap:EnrichedHeatmap]{EnrichedHeatmap::EnrichedHeatmap()}}.}
 }
 \value{
 a HeatmapList.