lineage_notes.txt

Lineage	Description
A	One of the two original haplotypes of the pandemic (A and B). Many sequences originating from China and many global exports; including to South East Asia Japan South Korea Australia the USA and Europe represented in this lineage
A.1	USA lineage
A.2	Mostly Spanish lineage now includes South and Central American sequences, other European countries and Kazakhstan.
A.2.2	Australian lineage
A.2.3	Scottish lineage
A.2.4	Panama lineage
A.2.5	Central American/ USA lineage
A.2.5.1	Costa Rica lineage, from #33
A.2.5.2	Predominantly Italy lineage
A.2.5.3	Predominantly Ecuador lineage, from #168
A.3	USA lineage
A.4	USA lineage
A.5	A lineage with a lot of representation from Spanish-speaking countries. A Spanish/ South-American lineage, but now with sequences from an outbreak in Scotland. Also now includes what was previously A.10.
A.6	Thai lineage
A.7	Indian lineage
A.9	Indian lineage
A.11	Ghana/ Senegal lineage
A.12	Sierra Leone lineage
A.15	Sweden/ Denmark lineage
A.16	Japanese lineage
A.17	French lineage
A.18	Cote d'Ivoire/ Burkina Faso lineage
A.19	Cote d'Ivoire/ Burkina Faso lineage
A.21	Mali/ Burkina Faso lineage
A.22	UAE lineage
A.23	Ugandan lineage
A.23.1	International lineage with a number of variants of potential biological concern, including 681R
A.24	South Korean lineage
A.25	Ugandan lineage
A.26	UK lineage
A.27	Mayotte/ European cluster with 18 changes in the long branch leading to this cluster, including 7 NS changes in the spike (L18F, L452R, N501Y, A653V, H655Y, D796Y, G1219V), on a 614D background, from #11.
A.28	This lineage has 9 changes on its basal branch, including the 69-70del, N501T (not Y) and H655Y. (This variant is picked up by the qPCR S drop), from #12
A.29	Lineage circulating in multiple countries, from #78
A.30	Lineage in several countries, associated with travel from Tanzania, from #138
B	One of the two original haplotypes of the pandemic(and first to be discovered)
B.1	A large European lineage the origin of which roughly corresponds to the Northern Italian outbreak early in 2020.
B.1.1	European lineage with 3 clear SNPs `28881GA`,`28882GA`,`28883GC`
B.1.1.1	England
C.1	Alias of B.1.1.1.1, South Africa, from #2
C.1.1	Alias of B.1.1.1.1.1, Mozambique
C.1.2	Alias of B.1.1.1.1.2, mostly South Africa, from #139
C.2	Alias of B.1.1.1.2, South Africa and some European
C.2.1	Alias of B.1.1.1.2.1, Aruba and Curacao, from #32
C.3	Alias of B.1.1.1.3, England
C.4	Alias of B.1.1.1.4, Peruvian
C.5	Alias of B.1.1.1.5, Switzerland and Luxembourg
C.6	Alias of B.1.1.1.6, South Africa
C.7	Alias of B.1.1.1.7, Denmark
C.8	Alias of B.1.1.1.8, Canada and DRC
C.9	Alias of B.1.1.1.9, South Africa
C.10	Alias of B.1.1.1.10, Poland
C.11	Alias of B.1.1.1.11
C.12	Alias of B.1.1.1.12, New Zealand
C.13	Alias of B.1.1.1.13, Peruvian
C.14	Alias of B.1.1.1.14, Peruvian
C.16	Alias of B.1.1.1.16, Portugal originally, now pan-european
C.17	Alias of B.1.1.1.17, Egypt
C.18	Alias of B.1.1.1.18, Italy
C.19	Alias of B.1.1.1.19, Denmark
C.20	Alias of B.1.1.1.20, Switzerland
C.21	Alias of B.1.1.1.21, Spain
C.22	Alias of B.1.1.1.22, Argentina
C.23	Alias of B.1.1.1.23, Mainly USA
C.25	Alias of B.1.1.1.25, Peru
C.26	Alias of B.1.1.1.26, Chile
C.27	Alias of B.1.1.1.27, England
C.28	Alias of B.1.1.1.28, USA
C.29	Alias of B.1.1.1.29, Chile
C.30	Alias of B.1.1.1.30, England
C.30.1	Alias of B.1.1.1.30.1, Denmark
C.31	Alias of B.1.1.1.31, USA
C.32	Alias of B.1.1.1.32, Peru
C.33	Alias of B.1.1.1.33, Peru
C.34	Alias of B.1.1.1.34, Canada
C.35	Alias of B.1.1.1.35, Central Europe, England
C.36	Alias of B.1.1.1.36, Egypt mainly and other countries
C.36.1	Alias of B.1.1.1.36.1, Canada
C.36.2	Alias of B.1.1.1.36.2, Switzerland
C.36.3	Alias of B.1.1.1.36.3, Europe and USA lineage, from #80
C.36.3.1	Alias of B.1.1.1.36.3.1, Europe and USA lineage, from #80
C.37	Alias of B.1.1.1.37, lineage in Peru, Chile, USA and Germany, from #52
C.37.1	Alias of B.1.1.1.37.1, lineage outside of South America, from #158
C.38	Alias of B.1.1.1.38, lineage in multiple countries, formally B.1.1.527, from #150
C.39	Alias of B.1.1.1.39, Chile and Peru lineage, from #178
C.40	Alias of B.1.1.1.40, Peru lineage, from #203
B.1.1.3	England Lineage
B.1.1.4	English lineage
B.1.1.5	European lineage
B.1.1.7	UK lineage of concern, associated with the N501Y mutation. More information can be found at cov-lineages.org/global_report.html
Q.1	Alias of B.1.1.7.1, predominantly Lithuania lineage, from #39
Q.2	Alias of B.1.1.7.2, Italy lineage, from #79
Q.3	Alias of B.1.1.7.3, USA lineage, from #92
Q.4	Alias of B.1.1.7.4, lineage in multiple countries with spike H681R, from #176
Q.5	Alias of B.1.1.7.5, Israel lineage, from #165
Q.6	Alias of B.1.1.7.6, France lineage, from #183
Q.7	Alias of B.1.1.7.7, predominantly France lineage, from #183
Q.8	Alias of B.1.1.7.8, Sri Lanka lineage, from #197
B.1.1.8	England
B.1.1.10	European lineage
L.1	Alias of B.1.1.10.1, Canadian lineage
L.2	Alias of B.1.1.10.2, Netherlands lineage
L.3	Alias of B.1.1.10.3, Nigerian/ European lineage with long branch from B.1.1.10
L.4	Alias of B.1.1.10.4, USA lineage
B.1.1.12	England
B.1.1.13	UK
B.1.1.14	Scotland
B.1.1.15	UK/ Luxembourg lineage
B.1.1.16	Wales with European base
B.1.1.17	Icelandic
B.1.1.25	Bangladesh Lineage
D.2	Alias of B.1.1.25.2, Australia
D.3	Alias of B.1.1.25.3, Australia
D.4	Alias of B.1.1.25.4, Irish/ Northern Irish lineage
D.5	Alias of B.1.1.25.5, Swedish/ Denmark lineage
B.1.1.26	USA Lineage
B.1.1.27	Oman Lineage, some UAE
B.1.1.28	Brazil mostly, absorbed B.1.1.94 and B.1.1.143
P.1	Alias of B.1.1.28.1, Brazilian lineage with a number of spike mutations with likely functional significance E484K, K417T, and N501Y. Described in https://virological.org/t/genomic-characterisation-of-an-emergent-sars-cov-2-lineage-in-manaus-preliminary-findings/586, from #77
P.1.1	Alias of B.1.1.28.1.1, European lineage in Italy and Germany, from #28
P.1.2	Alias of B.1.1.28.1.2, Netherlands/Brazil lineage. Imported into Netherlands, likely with local transmission here and continued circulation within and/or reintroduction into Brazil, from #56
P.1.3	Alias of B.1.1.28.1.3, Brazil lineage, from #141
P.1.4	Alias of B.1.1.28.1.4, Brazil lineage, from #141
P.1.5	Alias of B.1.1.28.1.5, Brazil lineage, from #141
P.1.6	Alias of B.1.1.28.1.6, Brazil lineage, from #141
P.1.7	Alias of B.1.1.28.1.7, Brazil lineage, from #141
P.1.7.1	Alias of B.1.1.28.1.7.1, Peru lineage, from #326
P.1.8	Alias of B.1.1.28.1.8, Brazil lineage, from #164
P.1.9	Alias of B.1.1.28.1.9, Brazil lineage, from #174
P.1.10	Alias of B.1.1.28.1.10, predominantly USA lineage, from #179
P.1.10.1	Alias of B.1.1.28.1.10.1, Aruba lineage, from #179
P.1.10.2	Alias of B.1.1.28.1.10.2, Mexico lineage, from #179
P.1.11	Alias of B.1.1.28.1.11, Brazil lineage, from #164
P.1.12	Alias of B.1.1.28.1.12, predominantly Peru lineage, from #212
P.1.12.1	Sublineage of P.1.12 reported predominantly from Peru and USA, from #282
P.1.13	Alias of B.1.1.28.1.13, USA lineage, from #231
P.1.14	Alias of B.1.1.28.1.14, predominantly Canada lineage, from #231
P.1.15	Alias of B.1.1.28.1.15, predominantly Chile lineage, from #231
P.1.16	Alias of B.1.1.28.1.16, predominantly Belgium lineage also in other countries in Europe, from #231
P.1.17	Alias of B.1.1.28.1.17, predominantly USA and Mexico lineage, from #231
P.1.17.1	Alias of B.1.1.28.1.17.1, predominantly in Luxembourg, from #231
P.2	Alias of B.1.1.28.2, Brazilian lineage
P.3	Alias of B.1.1.28.3, Lineage predominantly in the Philippines with spike mutations E484K, N501Y, P681H, 141-143del. Described in Tablizo et al 2021: https://www.medrxiv.org/content/10.1101/2021.03.03.21252812v2, from #27
P.4	Alias of B.1.1.28.4, Brazil lineage, from #68
P.5	Alias of B.1.1.28.5, Brazil lineage, from #86
P.6	Alias of B.1.1.28.6, Uruguay lineage, from #148
P.7	Alias of B.1.1.28.7, Brazil lineage, from #29
B.1.1.29	Wales lineage, formerly temporarily assigned B.1.1.439 due to an error, from #50
B.1.1.30	Lithuanian
B.1.1.31	Russian lineage
B.1.1.33	Brazilian
N.1	Alias of B.1.1.33.1, US
N.2	Alias of B.1.1.33.2, European lineage
N.3	Alias of B.1.1.33.3, Argentinian
N.4	Alias of B.1.1.33.4, Chilean
N.5	Alias of B.1.1.33.5, Argentinian
N.6	Alias of B.1.1.33.6, Chilean
N.7	Alias of B.1.1.33.7, Uruguay
N.8	Alias of B.1.1.33.8, Kenyan
N.9	Alias of B.1.1.33.9, Brazilian lineage, from #26
N.10	Alias of B.1.1.33.10, Brazilian lineage described in https://virological.org/t/identification-of-a-new-b-1-1-33-sars-cov-2-variant-of-interest-voi-circulating-in-brazil-with-mutation-e484k-and-multiple-deletions-in-the-amino-n-terminal-domain-of-the-spike-protein/675, from #40
B.1.1.34	South African lineage
B.1.1.37	UK lineage
B.1.1.38	Wales
B.1.1.39	Mostly Switzerland with lots of other countries
AQ.1	Alias of B.1.1.39.1, Finland lineage
AQ.2	Alias of B.1.1.39.2, Denmark lineage
B.1.1.40	South African lineage
B.1.1.41	England lineage
B.1.1.43	Scottish lineage
B.1.1.44	Pan-European, big scottish section
B.1.1.45	UK
B.1.1.46	Mostly India
B.1.1.47	Switzerland and other Northern Europe
B.1.1.48	Japan
B.1.1.49	Wales
B.1.1.50	Israel and Palestine
B.1.1.51	UK
B.1.1.52	South Africa
B.1.1.53	South Africa
B.1.1.54	South African Lineage
B.1.1.55	English lineage
B.1.1.56	South African lineage
B.1.1.57	South African lineage, a few English sequences, one Zimbabwe
B.1.1.58	European lineage
B.1.1.59	UK lineage
B.1.1.61	USA lineage
B.1.1.62	South African lineage
B.1.1.63	Hong Kong lineage
B.1.1.67	England and South Africa
B.1.1.70	European Lineage
AP.1	Alias of B.1.1.70.1, Wales lineage
B.1.1.71	Dutch, Central Europe
B.1.1.72	USA lineage
B.1.1.74	NI & Ireland Lineage
B.1.1.75	Belgian lineage
B.1.1.77	USA Lineage
B.1.1.82	Wales lineage
B.1.1.83	Northern Irish lineage
B.1.1.84	South African
B.1.1.86	UK lineage
B.1.1.87	Hungarian lineage
B.1.1.88	Portugal lineage
B.1.1.89	England
B.1.1.90	Sweden and Denmark lineage
B.1.1.91	Sweden
B.1.1.92	English lineage
B.1.1.93	USA Lineage
B.1.1.95	English lineage
B.1.1.97	England
B.1.1.98	USA lineage
B.1.1.99	Mostly South Africa
B.1.1.100	Denmark lineage
B.1.1.101	Indian lineage
B.1.1.107	England
B.1.1.109	UK lineage
B.1.1.110	Peru lineage
B.1.1.111	African lineage (Zambia, Zimbabwe)
B.1.1.112	Netherlands
B.1.1.113	Western USA
B.1.1.114	Wales
B.1.1.115	UK lineage, now contains former B.1.1.235
B.1.1.116	USA lineage
B.1.1.117	South African some Argentina, now contains B.1.1.252
B.1.1.118	USA Lineage (TX)
B.1.1.119	Northern Ireland lineage
B.1.1.120	UK lineage
B.1.1.121	Canadian lineage
B.1.1.122	Netherlands
B.1.1.123	UK lineage
B.1.1.125	UK lineage
B.1.1.127	Russian lineage
B.1.1.128	USA lineage
B.1.1.129	Russian lineage
B.1.1.130	England
B.1.1.132	USA Lineage
B.1.1.133	UAE/ European lineage
B.1.1.134	UK
B.1.1.135	US
B.1.1.136	Australian lineage
B.1.1.137	UK lineage
B.1.1.138	UK lineage
B.1.1.139	USA
B.1.1.141	Russian, Latvian, Netherlands
B.1.1.142	Australian lineage
B.1.1.144	Swiss lineage
B.1.1.145	UK lineage
B.1.1.147	England
B.1.1.148	USA lineage
B.1.1.149	English Lineage
B.1.1.152	Russian
B.1.1.153	Northern European Lineage
B.1.1.154	UK lineage
B.1.1.155	English
B.1.1.157	Canadian lineage
B.1.1.158	USA lineage
B.1.1.159	European lineage
B.1.1.160	Northern Ireland lineage
B.1.1.161	Saudi lineage
B.1.1.162	England, Russia, Latvia
B.1.1.163	Russian lineage
B.1.1.164	UK
B.1.1.165	England
B.1.1.166	UK lineage
B.1.1.168	UK lineage
B.1.1.169	USA lineage
B.1.1.170	UK/Denmark lineage
B.1.1.171	UK lineage
B.1.1.172	USA
B.1.1.174	USA lineage
B.1.1.175	Bangladesh
B.1.1.176	Canadian lineage
B.1.1.177	Texas
B.1.1.178	England
B.1.1.180	USA lineage
B.1.1.181	Used to be just Turkey, now lots of Canadian
B.1.1.182	USA
B.1.1.184	Russia, some B.1.1.129
B.1.1.185	Netherlands lineage
B.1.1.186	Southern USA
B.1.1.187	UK and italy
B.1.1.189	European lineage
B.1.1.190	Wales lineage
B.1.1.191	Denmark
B.1.1.192	USA
B.1.1.193	England
B.1.1.194	England
B.1.1.196	UK lineage
B.1.1.197	UK lineage
B.1.1.198	UK/ Luxembourg lineage
B.1.1.200	UK
AN.1	Alias of B.1.1.200.1, Sweden and Netherlands, from B.1.1.130
B.1.1.201	India and Singapore and Texas
B.1.1.202	Italy
B.1.1.203	England and Ecuador
B.1.1.204	UK lineage
B.1.1.205	USA lineage
B.1.1.207	USA
B.1.1.208	UK
B.1.1.209	Netherlands
B.1.1.210	USA (TX)
B.1.1.213	England
B.1.1.214	Japan
B.1.1.216	Predominantly Indian lineage with exports elsewhere
AM.1	Alias of B.1.1.216.1, Portugal lineage
AM.2	Alias of B.1.1.216.2, Canadian lineage
AM.3	Alias of B.1.1.216.3, UK lineage
AM.4	Alias of B.1.1.216.4, Canadian lineage
B.1.1.217	UK lineage
S.1	Alias of B.1.1.217.1, Latvian lineage, previously I.1
B.1.1.218	European lineage
B.1.1.219	Northern Europe (UK, Denmark, Norway, Sweden)
B.1.1.220	UK lineage
B.1.1.221	Belgian lineage
B.1.1.222	USA/Mexico
B.1.1.224	Denmark (some German)
B.1.1.225	USA
B.1.1.226	USA lineage
B.1.1.227	England
B.1.1.228	USA (WA)
B.1.1.229	Italy
B.1.1.230	USA
B.1.1.231	USA lineage
AL.1	Alias of B.1.1.231.1, Canada lineage
B.1.1.232	Northern Europe (UK, Germany, Denmark, Belgium, NL)
AK.1	Alias of B.1.1.232.1, UK lineage
AK.2	Alias of B.1.1.232.2, German lineage
B.1.1.234	England, Ireland, Northern Ireland, Northern Europe
B.1.1.236	UK
B.1.1.237	Wales
B.1.1.239	USA lineage
B.1.1.241	European lineage
AH.1	Alias of B.1.1.241.1, Swiss Lineage
AH.2	Alias of B.1.1.241.2, French Lineage
AH.3	Alias of B.1.1.241.3, Finnish Lineage
B.1.1.240	UK lineage
AJ.1	Alias of B.1.1.240.1, Portugal lineage
B.1.1.242	Gambia and Switzerland
B.1.1.243	Eastern Europe, Central Europe, UK
B.1.1.244	USA lineage
B.1.1.249	Welsh Lineage
B.1.1.251	UK and US
B.1.1.253	UK
B.1.1.254	Mostly South Africa
B.1.1.255	UK lineage
B.1.1.256	UK lineage
B.1.1.258	USA (TX)
B.1.1.261	Swedish/ Danish/ Faroe Islands lineage
B.1.1.257	Mostly UK lineage with other northern european plus one singapore
B.1.1.262	UK lineage
B.1.1.263	UAE lineage (~95%)
B.1.1.265	USA lineage
B.1.1.266	Czech lineage
B.1.1.267	Irish lineage
B.1.1.268	USA lineage
B.1.1.269	European lineage
B.1.1.270	UK lineage
B.1.1.271	German and Austrian lineage
B.1.1.272	Denmark
B.1.1.273	South african lineage, previously part of B.1.1.56
B.1.1.274	England, Thailand, Russia, USA
B.1.1.275	DRC with some UAE and England
B.1.1.277	European lineage
K.1	Alias of B.1.1.277.1, South Korean lineage
K.2	Alias of B.1.1.277.2, Russian lineage
K.3	Alias of B.1.1.277.3, Norway lineage
B.1.1.279	English Lineage
B.1.1.280	Lithuanian lineage
B.1.1.282	Netherlands lineage
B.1.1.283	Japan
B.1.1.284	Japan
B.1.1.285	Japan/ USA lineage
B.1.1.286	UK
B.1.1.288	Danish Lineage
B.1.1.289	UK lineage
B.1.1.290	USA lineage
B.1.1.291	USA Lineage
B.1.1.294	Russian and UK lineage
M.1	Alias of B.1.1.294.1, Israel
M.2	Alias of B.1.1.294.2, Swiss Lineage
M.3	Alias of B.1.1.294.3, English Lineage
B.1.1.296	UK lineage
B.1.1.297	Central Europe lineage
AG.1	Alias of B.1.1.297.1, Netherlands lineage
B.1.1.298	Denmark Lineage
B.1.1.299	UK lineage
B.1.1.300	UK lineage
B.1.1.301	UK lineage
B.1.1.302	Swedish lineage
B.1.1.303	UK
B.1.1.304	UK/USA lineage
B.1.1.305	Pan European
AF.1	Alias of B.1.1.305.1, Switzerland
B.1.1.306	Big indian lineage, exports to Zambia, Bahrain and Canada
AE.1	Alias of B.1.1.306.1, Zambian
AE.2	Alias of B.1.1.306.2, Bahrain
AE.3	Alias of B.1.1.306.3, Zambia and Rwanda
AE.4	Alias of B.1.1.306.4, Bahrain
AE.5	Alias of B.1.1.306.5, Zambia
AE.6	Alias of B.1.1.306.6, Bahrain
AE.7	Alias of B.1.1.306.7, Bahrain
AE.8	Alias of B.1.1.306.8, Canada lineage
B.1.1.307	UK lineage
B.1.1.308	UK
B.1.1.309	Now all England, was USA, so probably split from something
B.1.1.310	Northern Irish with English root
B.1.1.311	Huge UK lineage
B.1.1.312	Jordan lineage
B.1.1.315	Previously D.1, UK/ UAE lineage
AD.1	Alias of B.1.1.315.1, Denmark lineage
AD.2	Alias of B.1.1.315.2, UK lineage
AD.2.1	Alias of B.1.1.315.2.1, Lithuanian lineage
B.1.1.316	International lineage with spike mutation Q677H, parent of lineage R.1 and R.2 which have additional mutations including E484K mutation, from #14
R.1	Alias of B.1.1.316.1, Sublineage of B.1.1.316 with 3 additional spike mutations, circulating in a number of countries, from #17
R.2	Alias of B.1.1.316.2, Sublineage of B.1.1.316 with E484K, from #18
B.1.1.317	Russian lineage, from #53
AS.1	Alias of B.1.1.317.1, UK lineage
AS.2	Alias of B.1.1.317.2, UK lineage
B.1.1.318	Lineage circulating in multiple countries with a number of variants of concern (Spike D614G, Spike D796H, Spike E484K, Spike P681H, Spike T95I, Spike Y144del), from #15
AZ.1	Alias of B.1.1.318.1, Canada lineage, from #171
AZ.2	Alias of B.1.1.318.2, predominantly Greece lineage, from #171
AZ.2.1	Alias of B.1.1.318.2.1, Switzerland lineage, from #171
AZ.3	Alias of B.1.1.318.3, USA lineage, from #171
AZ.4	Alias of B.1.1.318.4, Ireland lineage, from #171
AZ.5	Alias of B.1.1.318.5, Mauritius lineage, from #171
AZ.6	Alias of B.1.1.318.6, Canada lineage, from #171
B.1.1.319	Russian/Serbian Lineage
B.1.1.320	USA lineage
B.1.1.322	Mexico/Southwest USA
B.1.1.323	Northern Europe, split from B.1.1.257
B.1.1.324	Chilean Lineage
B.1.1.325	Eastern Europe plus Belgium and Denmark
B.1.1.326	Indian Lineage
B.1.1.327	Swiss Lineage
B.1.1.328	Costa Rica and Florida
B.1.1.329	Pan-US
B.1.1.330	Chinese Lineage
B.1.1.331	Austrian lineage
B.1.1.332	Brazilian Lineage
B.1.1.333	Norwegian Lineage
B.1.1.334	USA and Mexico
B.1.1.335	USA and Canada
B.1.1.336	Russian lineage
B.1.1.337	US
B.1.1.338	German lineage
B.1.1.339	UAE and England
B.1.1.340	Indian Lineage
B.1.1.341	UK lineage
B.1.1.342	USA
B.1.1.343	Canadian lineage
B.1.1.344	Mexico, Texas
B.1.1.345	USA lineage
B.1.1.346	Denmark lineage
B.1.1.347	Central Europe
B.1.1.348	South America & USA
B.1.1.349	Russia, one "Congo"
B.1.1.350	Latvian lineage
B.1.1.351	USA, England, Finland, Denmark
B.1.1.352	USA lineage
B.1.1.353	UAE, Israel, Australia
B.1.1.354	Singapore, malaysia, India, UAE, England
B.1.1.355	England, Northern Europe
B.1.1.356	Texas
B.1.1.357	USA lineage
B.1.1.358	USA
B.1.1.359	Ghana and Denmark
B.1.1.360	Wales
B.1.1.361	England
B.1.1.362	USA
B.1.1.363	Wales
B.1.1.364	Russia, S Korea, England
B.1.1.365	England
B.1.1.366	UAE
B.1.1.367	USA
B.1.1.368	USA and Canada
B.1.1.369	England
B.1.1.370	England, USA, Russia, Germany
AT.1	Alias of B.1.1.370.1, Russia and Finland lineage, from #47
B.1.1.371	Saudi Arabia to Romania to Western Europe, contains B.1.1.161 at the base
B.1.1.372	England
B.1.1.373	Russia, split from B.1.1.31
B.1.1.374	Balkans, Finland
B.1.1.375	Mozambique, was C.1.1
B.1.1.376	USA (California)
B.1.1.377	Denmark
B.1.1.378	UK and Brazil
B.1.1.379	Wales
B.1.1.380	USA
B.1.1.381	Peruvian
B.1.1.382	South African lineage
B.1.1.383	South African
B.1.1.384	Swiss Lineage
B.1.1.385	German Lineage
B.1.1.386	South African lineage
B.1.1.387	South African lineage
B.1.1.388	Columbian lineage
B.1.1.389	Costa Rica lineage
B.1.1.391	UAE lineage
B.1.1.392	USA lineage
B.1.1.393	Brazilian lineage
B.1.1.394	Portugal lineage
B.1.1.395	UK lineage, previously part of B.1.1.279
B.1.1.396	Russian lineage, some previously B.1.1.184
B.1.1.397	Predominantly Russia, includes some previous B.1.1.67 and H.1 sequences
B.1.1.398	USA/ Indonesian lineage
B.1.1.399	Irish lineage
B.1.1.400	Spain lineage
B.1.1.401	Portugal lineage
B.1.1.402	USA (Texas), split from B.1.1.177
B.1.1.403	USA
B.1.1.404	Ghana, Burkina Faso, Luxembourg, Germany
B.1.1.405	Germany lineage
AC.1	Alias of B.1.1.405.1, UK lineage
B.1.1.406	Spain, UK, Italy
B.1.1.407	Mostly Russia
B.1.1.408	UK lineage
B.1.1.409	UAE, Israel, Saudi Arabia
B.1.1.410	Portugal lineage
B.1.1.411	Ecuador and US
B.1.1.412	South African lineage
B.1.1.413	Europe, Turkey, Iran
B.1.1.414	Indian lineage
B.1.1.415	Austrian lineage
B.1.1.416	USA lineage
B.1.1.417	Canada lineage
B.1.1.418	USA lineage
B.1.1.419	UK lineage, includes some formally B.1.1.193 sequences
B.1.1.420	Western Europe, USA
B.1.1.421	Portuguese lineage
B.1.1.422	Lithuanian lineage
B.1.1.423	USA lineage
B.1.1.424	Russia lineage, contains some formally B.1.1.167 sequences
B.1.1.425	England and Denmark
B.1.1.426	USA lineage
B.1.1.427	Russian Lineage
B.1.1.428	Switzerland and North Macedonia
B.1.1.429	Latvia and Finland
B.1.1.430	North Macedonia
B.1.1.431	Australia and Canada
B.1.1.432	USA and Mexico
B.1.1.433	Denmark and Switzerland, some B.1.1.281
B.1.1.434	Mostly USA lineage with some UK and Canada (was B.1.1.304)
B.1.1.435	Russian
B.1.1.436	Belgium lineage
B.1.1.437	USA lineage
B.1.1.438	Swedish lineage
B.1.1.440	USA and Mexico
B.1.1.441	USA lineage
B.1.1.442	Argentinian
B.1.1.444	South African (was B.1.1.117)
B.1.1.445	Switzerland lineage
B.1.1.446	Sweden lineage
B.1.1.447	USA lineage
B.1.1.448	South African (was B.1.1.54)
B.1.1.449	Russia lineage
B.1.1.450	USA lineage
B.1.1.451	Norway lineage
B.1.1.452	Russia lineage
B.1.1.453	US
B.1.1.456	South African
B.1.1.458	Swedish lineage
B.1.1.459	South African lineage (some were part of Belgian lineage B.1.1.75
B.1.1.461	USA TX lineage
B.1.1.462	United Arab Emirates
B.1.1.463	USA CA lineage
B.1.1.464	USA lineage
AW.1	Alias of B.1.1.464.1, Canadian lineage, from #103
B.1.1.465	Japanese lineage
B.1.1.466	Gambian lineage
B.1.1.467	USA lineage (NY)
B.1.1.480	USA Lineage
B.1.1.481	Russian Lineage
B.1.1.482	USA Lineage
AV.1	Alias of B.1.1.482.1, UK and France lineage with several VOC/VUI-like mutations, from #73
B.1.1.483	Belgian lineage
B.1.1.484	Nigerian Lineage
B.1.1.485	Ghanaian Lineage
B.1.1.486	USA Lineage
B.1.1.487	UK and Nigerian Lineage
B.1.1.500	UAE lineage
B.1.1.506	Mainly Russian
B.1.1.507	South African Lineage (was B.1.1.254)
B.1.1.512	USA/Mexico
B.1.1.513	USA lineage (NY)
B.1.1.514	USA lineage
B.1.1.515	German lineage
B.1.1.516	Costa Rica lineage
B.1.1.517	USA lineage
B.1.1.518	USA/ Mexico lineage
B.1.1.519	USA/ Mexico lineage, from #111
B.1.1.521	European lineage
B.1.1.522	Belgium lineage
B.1.1.523	Lineage in multiple countries, predominantly Russia, from #69
B.1.1.524	Predominantly Russia lineage, from #85
B.1.1.525	Predominantly Russia lineage, from #85
B.1.1.526	India lineage, previously designated B.1.624, from #91
B.1.1.528	South Africa lineage, from #177
B.1.1.529	South Africa and Botswana lineage, from #343
BA.1	Alias of B.1.1.529.1, from #361
BA.1.1	Alias of B.1.1.529.1.1, from #360
BA.1.1.1	Alias of B.1.1.529.1.1.1, European lineage
BC.1	Alias of B.1.1.529.1.1.1.1, Japan lineage
BC.2	Alias of B.1.1.529.1.1.1.2, Peru lineage, from #570
BA.1.1.2	Alias of B.1.1.529.1.1.2, Japan lineage
BA.1.1.3	Alias of B.1.1.529.1.1.3, Switzerland lineage
BA.1.1.4	Alias of B.1.1.529.1.1.4, UK lineage
BA.1.1.5	Alias of B.1.1.529.1.1.5, South Korea lineage
BA.1.1.6	Alias of B.1.1.529.1.1.6, Canada lineage
BA.1.1.7	Alias of B.1.1.529.1.1.7, lineage in India and other countries
BA.1.1.8	Alias of B.1.1.529.1.1.8, USA lineage
BA.1.1.9	Alias of B.1.1.529.1.1.9, New Zealand lineage
BA.1.1.10	Alias of B.1.1.529.1.1.10, Canada lineage
BA.1.1.11	Alias of B.1.1.529.1.1.11, European lineage
BA.1.1.12	Alias of B.1.1.529.1.1.12, UK lineage
BA.1.1.13	Alias of B.1.1.529.1.1.13, UK lineage
BA.1.1.14	Alias of B.1.1.529.1.1.14, European lineage
BA.1.1.15	Alias of B.1.1.529.1.1.15, Europe and Australia lineage
BA.1.1.16	Alias of B.1.1.529.1.1.16, Canada and USA lineage
BA.1.1.17	Alias of B.1.1.529.1.1.17, USA lineage, from #452
BA.1.1.18	Alias of B.1.1.529.1.1.18, USA lineage
BA.1.2	Alias of B.1.1.529.1.2, Mayotte and Reunion lineage
BA.1.3	Alias of B.1.1.529.1.3, Canada lineage
BA.1.4	Alias of B.1.1.529.1.4, France lineage
BA.1.5	Alias of B.1.1.529.1.5, UK lineage
BA.1.6	Alias of B.1.1.529.1.6, Canada and Sint Maarten lineage
BA.1.7	Alias of B.1.1.529.1.7, UK lineage
BA.1.8	Alias of B.1.1.529.1.8, European lineage
BA.1.9	Alias of B.1.1.529.1.9, Brazil lineage
BA.1.10	Alias of B.1.1.529.1.10, UK lineage
BA.1.12	Alias of B.1.1.529.1.12, UK lineage
BA.1.13	Alias of B.1.1.529.1.13, European lineage
BA.1.13.1	Alias of B.1.1.529.1.13.1, Indonesia lineage
BA.1.14	Alias of B.1.1.529.1.14, lineage in Brazil and other countries
BA.1.14.1	Alias of B.1.1.529.1.14.1, Brazil lineage, from #506
BA.1.14.2	Alias of B.1.1.529.1.14.2, Brazil lineage
BA.1.15	Alias of B.1.1.529.1.15, lineage in USA and other countries
BA.1.15.1	Alias of B.1.1.529.1.15.1, UK lineage
BA.1.15.2	Alias of B.1.1.529.1.15.2, USA lineage, from #508
BA.1.15.3	Alias of B.1.1.529.1.15.3, Peru lineage, from #573
BA.1.16	Alias of B.1.1.529.1.16, UK lineage
BA.1.16.1	Alias of B.1.1.529.1.16.1, Thailand, Cambodia and Indonesia lineage
BA.1.16.2	Alias of B.1.1.529.1.16.2, Greece lineage
BA.1.17	Alias of B.1.1.529.1.17, European lineage
BA.1.17.1	Alias of B.1.1.529.1.17.1, Australia lineage
BA.1.17.2	Alias of B.1.1.529.1.17.2, from #462
BD.1	Alias of B.1.1.529.1.17.2.1, UK lineage, from #461
BA.1.18	Alias of B.1.1.529.1.18, Europe and North America lineage, from #474
BA.1.19	Alias of B.1.1.529.1.19, Europe lineage, from #475
BA.1.20	Alias of B.1.1.529.1.20, USA lineage, from #375
BA.1.21	Alias of B.1.1.529.1.21, lineage, from #505
BA.1.21.1	Alias of B.1.1.529.1.21.1, Italy lineage, from #409
BA.1.22	Alias of B.1.1.529.1.22, Peru lineage, from #529
BA.1.23	Alias of B.1.1.529.1.23, mainly found in USA, from #663
BA.1.24	Alias of B.1.1.529.1.24, found in Spain, from #666
BA.2	Alias of B.1.1.529.2, from #361
BA.2.1	Alias of B.1.1.529.2.1, UK lineage
BA.2.2	Alias of B.1.1.529.2.2, Hong Kong lineage, from #430
BA.2.2.1	Alias of B.1.1.529.2.2.1, China lineage, from #675
BA.2.3	Alias of B.1.1.529.2.3, lineage in Philippines and other countries
BA.2.3.1	Alias of B.1.1.529.2.3.1, Japan lineage, from #495
BA.2.3.2	Alias of B.1.1.529.2.3.2, Vietnam and Japan lineage
BS.1	Alias of B.1.1.529.2.3.2.1, Vietnam lineage, from #1052
BS.1.1	Alias of B.1.1.529.2.3.2.1.1, Vietnam lineage, defined by S:K356T, from #1097
BS.1.2	Alias of B.1.1.529.2.3.2.1.2, Vietnam lineage, defined by S:T430I
BA.2.3.4	Alias of B.1.1.529.2.3.4, Canada lineage
BA.2.3.5	Alias of B.1.1.529.2.3.5, mainly found in USA, England and Spain, from #627
BA.2.3.6	Alias of B.1.1.529.2.3.6, mainly found in Canada and USA, from #633
BA.2.3.7	Alias of B.1.1.529.2.3.7, mainly found in Japan, Hong Kong and Taiwan, from #643
BA.2.3.8	Alias of B.1.1.529.2.3.8, South Korea lineage
BA.2.3.9	Alias of B.1.1.529.2.3.9, lineage in Netherlands and other countries
BA.2.3.10	Alias of B.1.1.529.2.3.10, Canada and USA lineage
BA.2.3.11	Alias of B.1.1.529.2.3.11, Japan lineage, from #605
BA.2.3.12	Alias of B.1.1.529.2.3.12, South Korea lineage
BA.2.3.13	Alias of B.1.1.529.2.3.13, Japan lineage
BA.2.3.14	Alias of B.1.1.529.2.3.14, South Korea lineage
BA.2.3.15	Alias of B.1.1.529.2.3.15, Italy and Spain lineage
BA.2.3.16	Alias of B.1.1.529.2.3.16, Papua New Guinea lineage, from #524
BP.1	Alias of B.1.1.529.2.3.16.1, Oceania/South East Asia lineage, from #1009
BA.2.3.17	Alias of B.1.1.529.2.3.17, Northern Mariana Islands and USA lineage, from #677
BA.2.3.18	Alias of B.1.1.529.2.3.18, Japan lineage, from #687
BA.2.3.19	Alias of B.1.1.529.2.3.19, found Brunei, from #824
BA.2.3.20	Alias of B.1.1.529.2.3.20, found globally, unclear origin, from #1013
CM.1	Alias of B.1.1.529.2.3.20.1, S:N17S, from #1129
CM.2	Alias of B.1.1.529.2.3.20.2, international, ORF1a:S2103F
CM.2.1	Alias of B.1.1.529.2.3.20.2.1, Indonesia/Australia, S:F486S, from #1356
CM.3	Alias of B.1.1.529.2.3.20.3, USA/South Korea/Australia, S:G485D
CM.4	Alias of B.1.1.529.2.3.20.4, USA/Singapore/SouthKorea, ORF1b:D146G
CM.4.1	Alias of B.1.1.529.2.3.20.4.1, S:K478R, Philippines/Japan/USA
CM.5	Alias of B.1.1.529.2.3.20.5, global, 10802T
CM.5.1	Alias of B.1.1.529.2.3.20.5.1, S:Q675R
CM.5.2	Alias of B.1.1.529.2.3.20.5.2, S:G485D, USA/Australia, from #1386
CM.6	Alias of B.1.1.529.2.3.20.6, global, ORF1a:G30A
CM.6.1	Alias of B.1.1.529.2.3.20.6.1, S:A348S, from #1165
CM.7	Alias of B.1.1.529.2.3.20.7, Japan/Singapore, S:F486S
CM.7.1	Alias of B.1.1.529.2.3.20.7.1, S:K147E, Europe, from sars-cov-2-variants/lineage-proposals#37
CM.7.1.1	Alias of B.1.1.529.2.3.20.7.1, S:R403K, Europe, from sars-cov-2-variants/lineage-proposals#37
CM.8	Alias of B.1.1.529.2.3.20.8, S:G446S
CM.8.1	Alias of B.1.1.529.2.3.20.8.1, Australia/England, S:F486S
CM.8.1.1	Alias of B.1.1.529.2.3.20.8.1.1, Singapore/Malaysia, S:K147N
FV.1	Alias of B.1.1.529.2.3.20.8.1.1.1, S:R346T, M:E11Q, Singapore/SouthKorea/Japan/Philippines/HK
CM.8.1.2	Alias of B.1.1.529.2.3.20.8.1.2, Germany/USA, S:K147I
CM.8.1.3	Alias of B.1.1.529.2.3.20.8.1.3, USA, S:Y1272H
CM.8.1.4	Alias of B.1.1.529.2.3.20.8.1.4, ORF1b:N1790D, Philippines, from #1554
CM.8.1.5	Alias of B.1.1.529.2.3.20.8.1.5, S:K150E, S:Y248H, N:A155V, Philippines, from sars-cov-2-variants/lineage-proposals#293
CM.9	Alias of B.1.1.529.2.3.20.9, USA/Canada/Israel, S:S256L
CM.10	Alias of B.1.1.529.2.3.20.10, USA/South Korea/Singapore, S:K478T reversion, S:V445A
CM.11	Alias of B.1.1.529.2.3.20.11, USA/South Korea, S:R346T, S:F486S, from #1509
CM.12	Alias of B.1.1.529.2.3.20.12, Hong Kong, USA, Australia, Japan, ORF8:T12I, from #1481
BA.2.3.21	Alias of B.1.1.529.2.3.21, Philippines, S:P9L and 493 reversion
DD.1	Alias of B.1.1.529.2.3.21.1, Philippines/Australia, Δ69-70, Δ144, V213E, G339N, R346T, Y449N, N460K, N481K, Q493L, K1205N, from #1287
BA.2.3.22	Alias of B.1.1.529.2.3.22, Philippines/Qatar/Germany, Δ69-70, W152L, N211-, L212I, S255F, R346T, K417T, F490A, A942S, from #1462
BA.2.4	Alias of B.1.1.529.2.4, Singapore lineage
BA.2.5	Alias of B.1.1.529.2.5, lineage in Portugal and other countries
BA.2.6	Alias of B.1.1.529.2.6, lineage in France and other countries
BA.2.7	Alias of B.1.1.529.2.7, USA lineage
BA.2.8	Alias of B.1.1.529.2.8, UK lineage, from #486
BA.2.9	Alias of B.1.1.529.2.9, European lineage, from #432
BA.2.9.1	Alias of B.1.1.529.2.9.1, UK lineage, from #530
BA.2.9.2	Alias of B.1.1.529.2.9.2, USA lineage
BA.2.9.3	Alias of B.1.1.529.2.9.3, mainly found in France, England, and Germany, from #630
BA.2.9.4	Alias of B.1.1.529.2.9.4, mainly found in France, from #635
BA.2.9.5	Alias of B.1.1.529.2.9.5, Thailand lineage
BA.2.9.6	Alias of B.1.1.529.2.9.6, mainly found in Spain, Denmark and Germany, from #671
BA.2.9.7	Alias of B.1.1.529.2.9.7, found mainly in USA, from #864
BA.2.10	Alias of B.1.1.529.2.10, lineage, from #496
BA.2.10.1	Alias of B.1.1.529.2.10.1, lineage in Singapore and other countries
BJ.1	Alias of B.1.1.529.2.10.1.1, mainly found in India (West Bengal), from #915
BA.2.10.2	Alias of B.1.1.529.2.10.2, mainly found in Japan, from #569
BA.2.10.3	Alias of B.1.1.529.2.10.3, mainly found in England, India and Bangladesh, from #609
BA.2.10.4	Alias of B.1.1.529.2.10.4, mainly found in India, from #898
BA.2.11	Alias of B.1.1.529.2.11, France lineage, from #491
BA.2.12	Alias of B.1.1.529.2.12, North America and Europe lineage, from #499
BA.2.12.1	Alias of B.1.1.529.2.12.1, USA and Canada lineage, from #499
BG.1	Alias of B.1.1.529.2.12.1.1, Peru lineage, from #679
BG.2	Alias of B.1.1.529.2.12.1.2, mainly found in USA, and Denmark, from #767
BG.3	Alias of B.1.1.529.2.12.1.3, mainly found in Peru, from #784
BG.4	Alias of B.1.1.529.2.12.1.4, Israel lineage
BG.5	Alias of B.1.1.529.2.12.1.5, mainly found in USA, from #763
BG.6	Alias of B.1.1.529.2.12.1.6, Peru lineage, from #836
BG.7	Alias of B.1.1.529.2.12.1.7, found in Peru, from #1157
BA.2.12.2	Alias of B.1.1.529.2.12.2, mainly found in Australia, from #686
BA.2.13	Alias of B.1.1.529.2.13, Europe lineage, from #531
BA.2.13.1	Alias of B.1.1.529.2.13.1, mainly found in USA, Canada and Colombia, from #785
BA.2.14	Alias of B.1.1.529.2.14, Denmark lineage, from #512
BA.2.15	Alias of B.1.1.529.2.15, South Africa lineage, from #533
BA.2.16	Alias of B.1.1.529.2.16, UK lineage, from #534
BA.2.17	Alias of B.1.1.529.2.17, Vietnam and Japan lineage, from #520
BA.2.18	Alias of B.1.1.529.2.18, UK lineage, from #528
BA.2.19	Alias of B.1.1.529.2.19, Germany lineage, from #535
BA.2.20	Alias of B.1.1.529.2.20, Canada lineage, from #544
BA.2.21	Alias of B.1.1.529.2.21, Canada and USA lineage, from #547
BA.2.22	Alias of B.1.1.529.2.22, UK lineage, from #562
BA.2.23	Alias of B.1.1.529.2.23, UK lineage, from #546
BA.2.23.1	Alias of B.1.1.529.2.23.1, mainly found in England, USA and Denmark, from #532
BA.2.24	Alias of B.1.1.529.2.24, Japan lineage, from #600
BA.2.25	Alias of B.1.1.529.2.25, Sweden lineage
BA.2.25.1	Alias of B.1.1.529.2.25.1, Slovakia lineage
BA.2.26	Alias of B.1.1.529.2.26, USA lineage
BA.2.27	Alias of B.1.1.529.2.27, Thailand lineage
BA.2.28	Alias of B.1.1.529.2.28, Singapore lineage
BA.2.29	Alias of B.1.1.529.2.29, Japan lineage
BA.2.30	Alias of B.1.1.529.2.30, Curacao lineage
BA.2.31	Alias of B.1.1.529.2.31, Israel lineage
BA.2.31.1	Alias of B.1.1.529.2.31.1, mainly found in Uganda, defined by S:68T, from #819
BA.2.32	Alias of B.1.1.529.2.32, Indonesia lineage
BA.2.33	Alias of B.1.1.529.2.33, Australia lineage
BA.2.34	Alias of B.1.1.529.2.34, Norway lineage
BA.2.35	Alias of B.1.1.529.2.35, Predominantly Portugal lineage, from #554
BA.2.36	Alias of B.1.1.529.2.36, mainly found in Germany, Belgium, England and Denmark, from #565
BA.2.37	Alias of B.1.1.529.2.37, mainly found in England, Scotland, Wales, from #572
BA.2.38	Alias of B.1.1.529.2.38, lineage in India and other countries, from #541
BA.2.38.1	Alias of B.1.1.529.2.38.1, India lineage, from #809
BA.2.38.2	Alias of B.1.1.529.2.38.2, mainly found in India, from #828
BA.2.38.3	Alias of B.1.1.529.2.38.3, mainly found in India, from #840
BA.2.38.4	Alias of B.1.1.529.2.38.4, mainly found in India, from #746
BH.1	Alias of B.1.1.529.2.38.3.1, mainly found in India, from #913
BA.2.39	Alias of B.1.1.529.2.39, mainly found in England, from #575
BA.2.40	Alias of B.1.1.529.2.40, mainly found in Malaysia, England, Denmark and Germany, from #542
BA.2.40.1	Alias of B.1.1.529.2.40.1, mainly found in Malaysia, England, Germany and Denmark, from #542
BA.2.41	Alias of B.1.1.529.2.41, mainly found in England and Scotland, from #586
BA.2.42	Alias of B.1.1.529.2.42, mainly found in Australia, from #610
BA.2.43	Alias of B.1.1.529.2.43, mainly found in India, from #612
BA.2.44	Alias of B.1.1.529.2.44, mainly found in Belgium and Luxembourg, from #613
BA.2.45	Alias of B.1.1.529.2.45, mainly found in Sweden and Denmark, from #616
BA.2.46	Alias of B.1.1.529.2.46, mainly found in Scotland, from #626
BA.2.47	Alias of B.1.1.529.2.47, mainly found in Denmark, England, and USA, from #631
BA.2.48	Alias of B.1.1.529.2.48, ORF1a:T1322I, S:Y248S, T4579A, mainly found in USA, Scotland and England, from #634
BA.2.49	Alias of B.1.1.529.2.49, mainly found in France, England and USA, from #640
BA.2.50	Alias of B.1.1.529.2.50, mainly found in Scotland and England, from #641
BA.2.51	Alias of B.1.1.529.2.51, mainly found in Denmark, from #644
BA.2.52	Alias of B.1.1.529.2.52, mainly found in Italy, Germany, Denmark and USA, from #648
BA.2.53	Alias of B.1.1.529.2.53, mainly found in Denmark, from #651
BA.2.54	Alias of B.1.1.529.2.54, mainly found in Germany, Spain and Denmark, from #658
BA.2.55	Alias of B.1.1.529.2.55, mainly found in England, USA and Scotland, from #660
BA.2.56	Alias of B.1.1.529.2.56, mainly found in Europe, from #668
BA.2.56.1	Alias of B.1.1.529.2.56.1, mainly found in Japan, from #745
BA.2.57	Alias of B.1.1.529.2.57, Malaysia, Singapore and Australia lineage
BA.2.58	Alias of B.1.1.529.2.58, Reunion lineage
BA.2.59	Alias of B.1.1.529.2.59, mainly found in USA, from #672
BA.2.60	Alias of B.1.1.529.2.60, Peru and Chile lineage, from #683
BA.2.61	Alias of B.1.1.529.2.61, Singapore lineage
BA.2.62	Alias of B.1.1.529.2.62, Australia lineage
BA.2.63	Alias of B.1.1.529.2.63, Greece lineage
BA.2.64	Alias of B.1.1.529.2.64, Indonesia lineage
BA.2.65	Alias of B.1.1.529.2.65, Canada and USA lineage
BA.2.66	Alias of B.1.1.529.2.66, Canada lineage
BA.2.67	Alias of B.1.1.529.2.67, Slovakia lineage
BA.2.68	Alias of B.1.1.529.2.68, South Korea lineage
BA.2.69	Alias of B.1.1.529.2.69, Martinique lineage
BA.2.70	Alias of B.1.1.529.2.70, Croatia lineage
BA.2.71	Alias of B.1.1.529.2.71, mainly found in Norway, Sweden and Denmark, from #695
BA.2.72	Alias of B.1.1.529.2.72, mainly found in USA, Germany and Switzerland, from #698
BA.2.73	Alias of B.1.1.529.2.73, Puerto Rico and USA lineage, from #632
BA.2.74	Alias of B.1.1.529.2.74, mainly found in India, from #775
BA.2.75	Alias of B.1.1.529.2.75, mainly found in India, from #773
BA.2.75.1	Alias of B.1.1.529.2.75.1, mainly found in India, from #856
BL.1	Alias of B.1.1.529.2.75.1.1, mainly found in India, S:R346T on polytomy, from #944
BL.1.1	Alias of B.1.1.529.2.75.1.1.1, defined by S:G614S, from #1079
BL.1.2	Alias of B.1.1.529.2.75.1.1.2, mainly Austria, defined by S:G261D, S:V308L, from #1066
BL.1.3	Alias of B.1.1.529.2.75.1.1.3, Switzerland, Israel, Canada, defined by S:F490L, from #1124
BL.1.4	Alias of B.1.1.529.2.75.1.1.4, India/England/New Zealand, defined by S:F490V
BL.1.5	Alias of B.1.1.529.2.75.1.1.5, Japan, S:A475V
BL.2	Alias of B.1.1.529.2.75.1.2, mainly found in India, defined by S:R346T on A26612T branch
BL.2.1	Alias of B.1.1.529.2.75.1.2.1, Australia/Belgium, defined by S:K182E
BL.3	Alias of B.1.1.529.2.75.1.3, mainly found in India, defined by ORF1a:P2685S on A26612T branch
BL.4	Alias of B.1.1.529.2.75.1.4, mainly found in India, defined by ORF7a:P45L with 11224T and 22720G branch
BL.5	Alias of B.1.1.529.2.75.1.5, mainly found in Denmark, from #1105
BL.6	Alias of B.1.1.529.2.75.1.6, mainly South Korea, S:R346T, S:V445A, from #1531
BA.2.75.2	Alias of B.1.1.529.2.75.2, mainly found in Asia and Australia, from #963
CA.1	Alias of B.1.1.529.2.75.2.1, USA lineage, defined by S:604I and S:452R, from #1063
CA.2	Alias of B.1.1.529.2.75.2.2, international lineage, defined by S:S494P
CA.3	Alias of B.1.1.529.2.75.2.3, India, defined by N:M101I, from #1136
CA.3.1	Alias of B.1.1.529.2.75.2.3.1, USA, S:K444M, S:L452R
CA.4	Alias of B.1.1.529.2.75.2.4, New Zealand, S:F486L, from #1181
CA.5	Alias of B.1.1.529.2.75.2.5, USA, S:A260D, S:Q613H
CA.6	Alias of B.1.1.529.2.75.2.6, India, ORF1a:Y196H
CA.7	Alias of B.1.1.529.2.75.2.7, S:L452R after ORF1a:L3776I
BA.2.75.3	Alias of B.1.1.529.2.75.3, mainly found in India, from #965
BM.1	Alias of B.1.1.529.2.75.3.1, mainly found in India, from #965
BM.1.1	Alias of B.1.1.529.2.75.3.1.1, mainly found in India (West Bengal), defined by S:346T
BM.1.1.1	Alias of B.1.1.529.2.75.3.1.1.1, mainly found in India (West Bengal), defined by S:490S, from #1043
CJ.1	Alias of B.1.1.529.2.75.3.1.1.1.1, S:S486P, from #1171
CJ.1.1	Alias of B.1.1.529.2.75.3.1.1.1.1.1, S:V445A, Singapore/Malaysia/Japan, from #1384
CJ.1.2	Alias of B.1.1.529.2.75.3.1.1.1.1.2, ORF1a:L2609F, Sweden/France/England
CJ.1.3	Alias of B.1.1.529.2.75.3.1.1.1.1.3, A261G reversion, G4960A, C14790T, South Korea
CJ.1.3.1	Alias of B.1.1.529.2.75.3.1.1.1.1.3.1, S:R214S, ORF1a:G3578S, South Korea/Japan, from sars-cov-2-variants/lineage-proposals#287
CJ.1.3.2	Alias of B.1.1.529.2.75.3.1.1.1.1.3.2, S:D936H, South Korea, from sars-cov-2-variants/lineage-proposals#287
BM.1.1.2	Alias of B.1.1.529.2.75.3.1.1.2, England, S:T883I, S:S939F, S:P1079T
BM.1.1.3	Alias of B.1.1.529.2.75.3.1.1.3, India, defined by ORF10:A8V
CV.1	Alias of B.1.1.529.2.75.3.1.1.3.1, Ireland, S:L452R
CV.2	Alias of B.1.1.529.2.75.3.1.1.3.2, Chile, S:486P, from #1374
BM.1.1.4	Alias of B.1.1.529.2.75.3.1.1.4, S:K356T & S:T572I, from #1438
EP.1	Alias of B.1.1.529.2.75.3.1.1.4.1, S:L452R, Bhutan, from #1676
EP.1.1	Alias of B.1.1.529.2.75.3.1.1.4.1.1, ORF1a:P4120S, ORF8:Q18H, Bhutan
EP.1.1.1	Alias of B.1.1.529.2.75.3.1.1.4.1.1.1, S:T22N, S:T76I, S:T1006A, Bhutan/Thailand/Singapore
EP.2	Alias of B.1.1.529.2.75.3.1.1.4.2, S:S1147L, N:G212S, Belgium/Europe
BM.1.1.5	Alias of B.1.1.529.2.75.3.1.1.5, England/Belgium/France, S:N185S & S:L452R
BM.2	Alias of B.1.1.529.2.75.3.2, mainly found in India (Telangana), defined by S:346T
BM.2.1	Alias of B.1.1.529.2.75.3.2.1, India, defined by S:F486V
BM.2.2	Alias of B.1.1.529.2.75.3.2.2, Japan/Israel, defined by S:L455S
BM.2.3	Alias of B.1.1.529.2.75.3.2.3, India/Singapore, defined by S:F486I
BM.3	Alias of B.1.1.529.2.75.3.3, found in Nepal and globally, defined by ORF1b:P1652S
BM.4	Alias of B.1.1.529.2.75.3.4, mainly found in India, defined by ORF1a:Q1198K, from #957
BM.4.1	Alias of B.1.1.529.2.75.3.4.1, mainly found in India, defined by S:F486S, from #957
BM.4.1.1	Alias of B.1.1.529.2.75.3.4.1.1, mainly found in India, defined by S:346T
CH.1	Alias of B.1.1.529.2.75.3.4.1.1.1, defined by S:K444T, from #1113
CH.1.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1, defined by S:L452R, from #1113
CH.1.1.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1, defined by S:N185D
DV.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.1, UK, defined by S:L176F
DV.1.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.1.1, defined by S:Q613H and N:T265I, from #1720
DV.2	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.2, UK, defined by S:I569V
DV.3	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.3, UK, defined by ORF1a:E377K
DV.3.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.3.1 found mainly in Portugal and UK, from #1626
DV.4	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.4, Malaysia/Singapore, S:I714V, from #1617
DV.5	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.5, England/Australia, ORF1a:R24C, S:613H, from #1753
DV.6	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6, T15591C
DV.6.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6.1, S:Q613H, T15591C, Central Europe
DV.6.2	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6.2, S:Q613H, C6628T, Asia, from #2045
DV.7	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7, S:L858I, ORF1a:A3548V, England, from #2038
DV.7.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1, S:L455F (G22927T), S:F456L (T22928C), Spain/Austria, from sars-cov-2-variants/lineage-proposals#135
DV.7.1.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.1, S:K679R, on branch ORF1a:K3353R Spain, from sars-cov-2-variants/lineage-proposals#732
DV.7.1.2	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2, ORF1a:A4162V, Spain/England, from #2258
JV.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2.1, S:G485R, France, from sars-cov-2-variants/lineage-proposals#760
JV.2	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2.2, S:V772I, France/Spain
DV.7.1.3	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.3, S:A262S, on branch ORF1a:K3353R, from sars-cov-2-variants/lineage-proposals#851
DV.7.1.4	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.4, G28001T, on branch ORF1a:K3353R
DV.7.1.5	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5, N:T135A, Spain, from sars-cov-2-variants/lineage-proposals#729
KG.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5.1, S:M153I, from sars-cov-2-variants/lineage-proposals#951
KG.2	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5.2, S:H49Y, S:A264D, S:G485R, Spain/Canada
DV.7.1.6	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.6, S:Q183K, N:A217S, from sars-cov-2-variants/lineage-proposals#765
DV.7.1.7	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.7, S:V90I
DV.7.1.8	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.8, S:T961M, Spain, from sars-cov-2-variants/lineage-proposals#860
DV.7.1.9	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.9, S:R1185H, Australia
DV.7.2	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.2, C703T, England
DV.8	Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.8, S:Q613H, C8299T, C19602T, Sweden
CH.1.1.2	Alias of B.1.1.529.2.75.3.4.1.1.1.1.2, defined by S:T883I, ORF1a:Y1846C, ORF1a:G2294S on T27576C branch
CH.1.1.3	Alias of B.1.1.529.2.75.3.4.1.1.1.1.3, S:S255P, New Zealand/Australia/Hong Kong, from #1405
GQ.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.3.1, S:486P, ORF1a:H1545Q, ORF1b:V1520L, Australia/New Zealand, from #1872
GQ.1.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.3.1.1, S:G213E, New Zealand, from sars-cov-2-variants/lineage-proposals#343
CH.1.1.4	Alias of B.1.1.529.2.75.3.4.1.1.1.1.4, S:H681R, Austria, from #1370
CH.1.1.5	Alias of B.1.1.529.2.75.3.4.1.1.1.1.5, ORF3a:P104S, found mainly in Denmark and UK, from #1539
CH.1.1.6	Alias of B.1.1.529.2.75.3.4.1.1.1.1.6, UK, defined by S:T732I
CH.1.1.7	Alias of B.1.1.529.2.75.3.4.1.1.1.1.7, New Zealand/Australia, defined by ORF1a:F143C
CH.1.1.8	Alias of B.1.1.529.2.75.3.4.1.1.1.1.8, Ireland, defined by S:A846V
CH.1.1.9	Alias of B.1.1.529.2.75.3.4.1.1.1.1.9, England, defined by S:I1232V
CH.1.1.10	Alias of B.1.1.529.2.75.3.4.1.1.1.1.10, Ireland, ORF1a:G442S
CH.1.1.11	Alias of B.1.1.529.2.75.3.4.1.1.1.1.11, ORF1a:A1176T
GP.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.11.1, S:Q52H, ORF7a:T28I, Europe
GP.2	Alias of B.1.1.529.2.75.3.4.1.1.1.1.11.2, ORF6:S41F, T13450C, Europe
GP.3	Alias of B.1.1.529.2.75.3.4.1.1.1.1.11.3, T5218C, A16878G, A26519G, C29236T, Ireland
CH.1.1.12	Alias of B.1.1.529.2.75.3.4.1.1.1.1.12, S:L858I on ORF1a:A486V branch, Denmark
FS.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.12.1, found mainly in Denmark, from #1816
CH.1.1.13	Alias of B.1.1.529.2.75.3.4.1.1.1.1.13, ORF3a:S171L
CH.1.1.14	Alias of B.1.1.529.2.75.3.4.1.1.1.1.14, N:T362I
CH.1.1.15	Alias of B.1.1.529.2.75.3.4.1.1.1.1.15, found mainly in Lithuania, Germany and UK, from #1726
CH.1.1.16	Alias of B.1.1.529.2.75.3.4.1.1.1.1.16, S:613H, ORF3a:S26L, on C193T branch, Germany/Sweden, from #1753
CH.1.1.17	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17, M:S212G, on C21811T branch, from #1753
FK.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1, found mainly in New Zealand and Australia, from #1718
FK.1.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.1, ORF1a:A1060T, on C27804T>ORF1b:L2580I>N:G34E branch, New Zealand, from #1881
FK.1.1.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.1.1, S:V445A, Australia, from sars-cov-2-variants/lineage-proposals#368
FK.1.1.2	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.1.2, C9223T, T23071G
FK.1.2	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.2, ORF1a:L384F, ORF1a:R550H
FK.1.2.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.2.1, ORF1a:T891I, Germany/Denmark/Finland/Austria
FK.1.2.2	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.2.2, ORF1a:D139N, ORF1a:R226K, ORF1a:Q556K, ORF3a:T64N, T11737C, Australia/NZ
FK.1.3	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.3, ORF1b:M1839I, on C27804T>ORF1b:L2580I>N:G34E branch, Australia
FK.1.3.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.3.1, S:E583D, Australia
FK.1.3.2	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.3.2, C9391T, T13596C, Australia/Japan
JL.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.3.2.1, S:E1111Q, Japan, from #2168
FK.1.4	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.4, S:S704L, on C27804>ORF7a:Y40H branch, Australia
FK.1.4.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.4.1, S:G181A, Australia/Puerto Rico, from sars-cov-2-variants/lineage-proposals#88
FK.1.5	Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.5, G5155A, C12439T, Australia/New Zealand
CH.1.1.18	Alias of B.1.1.529.2.75.3.4.1.1.1.1.18, S:K187T, from #1747
CH.1.1.19	Alias of B.1.1.529.2.75.3.4.1.1.1.1.19, C2773T, Europe
FJ.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.19.1, ORF1a:A1204V, England
CH.1.1.20	Alias of B.1.1.529.2.75.3.4.1.1.1.1.20, England, T299I, R403K, D1165G, from #1736
CH.1.1.21	Alias of B.1.1.529.2.75.3.4.1.1.1.1.21, England, S:N481Y, from #1799
CH.1.1.22	Alias of B.1.1.529.2.75.3.4.1.1.1.1.22, found mainly in Denmark, from #1670
CH.1.1.23	Alias of B.1.1.529.2.75.3.4.1.1.1.1.23, found mainly in UK, from #1862
CH.1.1.24	Alias of B.1.1.529.2.75.3.4.1.1.1.1.24, T931C, T6676C
CH.1.1.25	Alias of B.1.1.529.2.75.3.4.1.1.1.1.25, ORF1a:S330L, ORF1a:P4197S, US
CH.1.1.26	Alias of B.1.1.529.2.75.3.4.1.1.1.1.26, C29296T, Japan
CH.1.1.27	Alias of B.1.1.529.2.75.3.4.1.1.1.1.27, ORF1a:S538L, New Zealand
CH.1.1.28	Alias of B.1.1.529.2.75.3.4.1.1.1.1.28, ORF1b:V1092F, Europe
CH.1.1.29	Alias of B.1.1.529.2.75.3.4.1.1.1.1.29, S:613H, ORF1a:P371S, Europe/Canada
CH.1.1.30	Alias of B.1.1.529.2.75.3.4.1.1.1.1.30, ORF1a:Y2968H, C17913T, Germany/Netherlands/Austria
CH.1.1.31	Alias of B.1.1.529.2.75.3.4.1.1.1.1.31, ORF1a:N593S, ORF1a:P1497S, ORF1a:T2791I, ORF1b:D1024N, South Africa
JP.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.31.1, S:R403K, S:V36I, S:G181E, South Africa, from sars-cov-2-variants/lineage-proposals#655
JP.1.1	Alias of B.1.1.529.2.75.3.4.1.1.1.1.31.1.1, S:G1219V, ORF1a:T1542I, South Africa
CH.1.1.32	Alias of B.1.1.529.2.75.3.4.1.1.1.1.32, S:L858I, N:P80Q, ORF1a:E974A, from #2150
CH.2	Alias of B.1.1.529.2.75.3.4.1.1.2, defined by S:Q183H
CH.3	Alias of B.1.1.529.2.75.3.4.1.1.3, defined by S:486P on ORF1b:Q2425R branch, from #1375
CH.3.1	Alias of B.1.1.529.2.75.3.4.1.1.3.1, S:S494P, Australia/Indonesia, from #1421
BM.5	Alias of B.1.1.529.2.75.3.5, mainly found in India, defined by S:L455S, from #1047
BM.6	Alias of B.1.1.529.2.75.3.6, India, defined by S:G75V followed by S:L455S
BA.2.75.4	Alias of B.1.1.529.2.75.4, mainly found in India, from #935
BR.1	Alias of B.1.1.529.2.75.4.1, mainly found in India (Karnataka), defined by S:K444M
BR.1.1	Alias of B.1.1.529.2.75.4.1.1, Austria/Australia, S:T307S
BR.1.2	Alias of B.1.1.529.2.75.4.1.2, Italy/USA, S:F486S
BR.2	Alias of B.1.1.529.2.75.4.2, found in Australia, defined by S:R346T and S:486I, from #1063
BR.2.1	Alias of B.1.1.529.2.75.4.2.1, found mainly in Australia, from #1292
BR.3	Alias of B.1.1.529.2.75.4.3, India, Australia, Austria, defined by S:R346T, from #1063
BR.4	Alias of B.1.1.529.2.75.4.4, S:K444T and S:G446S reversion, from #1179
BR.5	Alias of B.1.1.529.2.75.4.5 found mainly in SouthKorea and usa, from #1345
BR.5.1	Alias of B.1.1.529.2.75.4.5.1 ORF1a:K2029N, ORF1b:T1522I, A20289G, South Korea
BA.2.75.5	Alias of B.1.1.529.2.75.5, mainly found in India, from #947
BN.1	Alias of B.1.1.529.2.75.5.1, mainly found in India, from #994
BN.1.1	Alias of B.1.1.529.2.75.5.1.1, India/Austria, S:S494P, from #1176
BN.1.1.1	Alias of B.1.1.529.2.75.5.1.1.1, Austria, S:N185D
BN.1.2	Alias of B.1.1.529.2.75.5.1.2, Singapore/England, E:D72G
BN.1.2.1	Alias of B.1.1.529.2.75.5.1.2.1, England/Portugal, S:T470N, from #1238
BN.1.2.2	Alias of B.1.1.529.2.75.5.1.2.2, C29546T
BN.1.2.3	Alias of B.1.1.529.2.75.5.1.2.3, C1471T
FR.1	Alias of B.1.1.529.2.75.5.1.2.3.1, S:K187E, N:T366I, Japan/Taiwan/USA, from #1814
FR.1.1	Alias of B.1.1.529.2.75.5.1.2.3.1.1, S:P82H, ORF1a:L293F, China, from #2006
FR.1.2	Alias of B.1.1.529.2.75.5.1.2.3.1.2, S:R190M, China, from #2028
FR.1.3	Alias of B.1.1.529.2.75.5.1.2.3.1.3, ORF1a:A206V, ORF1b:A517V, N:G34E, China, from #2039
FR.1.4	Alias of B.1.1.529.2.75.5.1.2.3.1.4, A3715G, C15960T, on shared T2372C, C7318T, ORF1a:L293F branch with FR.1.1, China, from sars-cov-2-variants/lineage-proposals#256
FR.1.5	Alias of B.1.1.529.2.75.5.1.2.3.1.5, ORF1a:V116M, ORF1a:S2242F, ORF1a:M4071T, Japan
FR.2	Alias of B.1.1.529.2.75.5.1.2.3.2, ORF1a:Y1920H, ORF1b:I1799S, South Korea
BN.1.2.4	Alias of B.1.1.529.2.75.5.1.2.4, ORF1b:D1746H
BN.1.2.5	Alias of B.1.1.529.2.75.5.1.2.5, C3241T, C16833T, G22225A, South Korea
BN.1.2.6	Alias of B.1.1.529.2.75.5.1.2.6, ORF1b:A1326S, South Korea
BN.1.2.7	Alias of B.1.1.529.2.75.5.1.2.7, N:N8S, C16332T, Taiwan, from #1923
BN.1.2.8	Alias of B.1.1.529.2.75.5.1.2.8, S:N703K, Russia
BN.1.3	Alias of B.1.1.529.2.75.5.1.3, India, ORF3a:T229I
BN.1.3.1	Alias of B.1.1.529.2.75.5.1.3.1, found mainly in Israel, England and Denmark, from #1257
DS.1	Alias of B.1.1.529.2.75.5.1.3.1.1, USA/Ireland/Austria, S:F486S, S:R403K
DS.2	Alias of B.1.1.529.2.75.5.1.3.1.2, Germany, S:T572I
DS.3	Alias of B.1.1.529.2.75.5.1.3.1.3, Denmark, ORF3a:G254V
BN.1.3.2	Alias of B.1.1.529.2.75.5.1.3.2, S:V445A found mainly in Japan, from #1397
BN.1.3.3	Alias of B.1.1.529.2.75.5.1.3.3, S:E147Q, mainly Europe
BN.1.3.4	Alias of B.1.1.529.2.75.5.1.3.4, S:V445A, Japan/England/NZ/Russia
BN.1.3.5	Alias of B.1.1.529.2.75.5.1.3.5 ORF7b:C41W, found mainly in SouthKorea, Japan and USA, from #1516
BN.1.3.6	Alias of B.1.1.529.2.75.5.1.3.6 M:R174Q
BN.1.3.7	Alias of B.1.1.529.2.75.5.1.3.7 ORF1a:T1429I
BN.1.3.8	Alias of B.1.1.529.2.75.5.1.3.8 S:D1139H
EJ.1	Alias of B.1.1.529.2.75.5.1.3.8.1, S:I1225V
EJ.2	Alias of B.1.1.529.2.75.5.1.3.8.2, ORF1a:T4355I
EJ.3	Alias of B.1.1.529.2.75.5.1.3.8.3, C2509T, C3241T, C17004T, South Korea
BN.1.3.9	Alias of B.1.1.529.2.75.5.1.3.9 S:V83F, from #1748
BN.1.3.10	Alias of B.1.1.529.2.75.5.1.3.10 ORF1a:Q1918R, C13608T, Asia/Oceania
BN.1.3.11	Alias of B.1.1.529.2.75.5.1.3.11 ORF1a:T568I, ORF1a:V1211F, South Korea
BN.1.3.12	Alias of B.1.1.529.2.75.5.1.3.12 C14358T, T22672C, South Korea/Thailand/Germany
BN.1.3.13	Alias of B.1.1.529.2.75.5.1.3.13 S:V445A, C3817T, C17818T, Taiwan/Japan/South Korea, from sars-cov-2-variants/lineage-proposals#218
BN.1.4	Alias of B.1.1.529.2.75.5.1.4, India, 27501C
BN.1.4.1	Alias of B.1.1.529.2.75.5.1.4.1, S:G261V & S:T678I, from #1417
BN.1.4.2	Alias of B.1.1.529.2.75.5.1.4.2, S:Q1113K
BN.1.4.3	Alias of B.1.1.529.2.75.5.1.4.3, ORF1a:P1096T
BN.1.4.4	Alias of B.1.1.529.2.75.5.1.4.4, ORF1b:V1149L, ORF1b:V1723M
BN.1.4.5	Alias of B.1.1.529.2.75.5.1.4.5, ORF1a:T3287I
BN.1.5	Alias of B.1.1.529.2.75.5.1.5, ORF1a:S2103F
BN.1.5.1	Alias of B.1.1.529.2.75.5.1.5.1, New Zealand, S:S514T
BN.1.5.2	Alias of B.1.1.529.2.75.5.1.5.2, S:N481K
BN.1.6	Alias of B.1.1.529.2.75.5.1.6, S:D1139H
BN.1.7	Alias of B.1.1.529.2.75.5.1.7, England, S:M177T, S:H1101Y, from #1310
BN.1.8	Alias of B.1.1.529.2.75.5.1.8, Iceland/USA, S:A475V
BN.1.9	Alias of B.1.1.529.2.75.5.1.9, found mainly in Indonesia, from #1327
BN.1.10	Alias of B.1.1.529.2.75.5.1.10, defined by S:Y145H
BN.1.11	Alias of B.1.1.529.2.75.5.1.11, South Korea, defined by S:L176F, S:D936H
BN.2	Alias of B.1.1.529.2.75.5.2, mainly found in India, from #1021
BN.2.1	Alias of B.1.1.529.2.75.5.2.1, mainly USA and Canada lineage, defined by S:H49Y and S:F490S
BN.3	Alias of B.1.1.529.2.75.5.3, defined by S:N450D on ORF1a:392D branch
BN.3.1	Alias of B.1.1.529.2.75.5.3.1, South Korea/Austria/Israel/Belgium, defined by S:F490S
BN.4	Alias of B.1.1.529.2.75.5.4, Netherlands/Germany, defined by S:F490S on ORF1a:392D branch
BN.5	Alias of B.1.1.529.2.75.5.5, India, defined by ORF1a:V2995M
BN.6	Alias of B.1.1.529.2.75.5.6, India, defined by ORF1a:T3959A
BA.2.75.6	Alias of B.1.1.529.2.75.6, mainly found in India, defined by S:R346T on the BA.2.75 polytomy
BY.1	Alias of B.1.1.529.2.75.6.1, mainly found in India, defined by S:F486S on BA.2.75.6
BY.1.1	Alias of B.1.1.529.2.75.6.1.1, S:L452R
BY.1.1.1	Alias of B.1.1.529.2.75.6.1.1.1, Europe, S:N185D, S:H207R,
BY.1.2	Alias of B.1.1.529.2.75.6.1.2, Europe, 26828T
BY.1.2.1	Alias of B.1.1.529.2.75.6.1.2.1, Austria/England, S:S494P, from #1184
BA.2.75.7	Alias of B.1.1.529.2.75.7, mainly found in India, defined by S:F486S on the BA.2.75 polytomy
BA.2.75.8	Alias of B.1.1.529.2.75.8, Singapore/Australia, defined by S:L452Q, from #1085
BA.2.75.9	Alias of B.1.1.529.2.75.9, India, defined by S:R346T after 17679T, from #1098
CB.1	Alias of B.1.1.529.2.75.9.1, England, defined by S:486V, from #1098
BA.2.75.10	Alias of B.1.1.529.2.75.10, India, ORF1a:T3959A
BA.2.76	Alias of B.1.1.529.2.76, mainly found in India and USA, from #787
BA.2.76.1	Alias of B.1.1.529.2.76.1, mainly found in India, from #899
BA.2.76.2	Alias of B.1.1.529.2.76.2, found in Japan, from #939
BA.2.77	Alias of B.1.1.529.2.77, mainly found in Ireland, England and USA, from #732
BA.2.78	Alias of B.1.1.529.2.78, mainly found in India, from #814
BA.2.79	Alias of B.1.1.529.2.79, Kuwait and Israel lineage, from #812
BA.2.79.1	Alias of B.1.1.529.2.79.1, India lineage, from #814
BA.2.80	Alias of B.1.1.529.2.80, found in Denmark, from #733
BA.2.81	Alias of B.1.1.529.2.81, Brazil lineage
BA.2.82	Alias of B.1.1.529.2.82, mainly found in Australia, Israel and Japan, from #874
BA.2.83	Alias of B.1.1.529.2.83, mainly found in India, from #1053
BA.2.85	Alias of B.1.1.529.2.85, mainly found in Japan, from #983
BA.2.86	Alias of B.1.1.529.2.86, from #2183
BA.2.86.1	Alias of B.1.1.529.2.86.1, ORF1a:K1973R, mostly with C12815T, mainly Europe, from #2236
JN.1	Alias of B.1.1.529.2.86.1.1, S:L455S, ORF1a:R3821K, ORF7b:F19L, Europe
JN.1.1	Alias of B.1.1.529.2.86.1.1.1, ORF1a:F499L, C11747T, France, from sars-cov-2-variants/lineage-proposals#987
JN.1.1.1	Alias of B.1.1.529.2.86.1.1.1.1, S:T572I on C9142T branch, France/Sweden/Poland, from sars-cov-2-variants/lineage-proposals#1097
JN.1.1.2	Alias of B.1.1.529.2.86.1.1.1.2, S:G181E, France, from sars-cov-2-variants/lineage-proposals#1147
JN.1.1.3	Alias of B.1.1.529.2.86.1.1.1.3, S:R346T, from sars-cov-2-variants/lineage-proposals#1089
LT.1	Alias of B.1.1.529.2.86.1.1.1.3.1, S:F456V, L176F, USA/Canada
JN.1.1.4	Alias of B.1.1.529.2.86.1.1.1.4, S:V1264L on C9142T branch, from #2476
JN.1.1.5	Alias of B.1.1.529.2.86.1.1.1.5, S:R346T on C9142T branch, from #2492
KR.1	Alias of B.1.1.529.2.86.1.1.1.5.1, S:F456L (22928C), after C28498T, from sars-cov-2-variants/lineage-proposals#1253
KR.1.1	Alias of B.1.1.529.2.86.1.1.1.5.1.1, S:F59L, from sars-cov-2-variants/lineage-proposals#1545
KR.1.2	Alias of B.1.1.529.2.86.1.1.1.5.1.2, S:R683Q
KR.1.3	Alias of B.1.1.529.2.86.1.1.1.5.1.3, S:K304Q, S:S60P, Philippines
KR.3	Alias of B.1.1.529.2.86.1.1.1.5.3, S:F456L (22930A), from sars-cov-2-variants/lineage-proposals#1253
KR.4	Alias of B.1.1.529.2.86.1.1.1.5.4, S:Q218E
KR.4.1	Alias of B.1.1.529.2.86.1.1.1.5.4.1, S:F456L (22928C), S:K478T, South Africa
KR.5	Alias of B.1.1.529.2.86.1.1.1.5.5, ORF1a:L642F, ORF1a:T2087I, Brazil
JN.1.1.6	Alias of B.1.1.529.2.86.1.1.1.6, S:F456L, from sars-cov-2-variants/lineage-proposals#1253
KZ.1	Alias of B.1.1.529.2.86.1.1.1.6.1, ORF1b:V1092F
KZ.1.1	Alias of B.1.1.529.2.86.1.1.1.6.1.1, S:R346T from #2548
KZ.1.1.1	Alias of B.1.1.529.2.86.1.1.1.6.1.1.1, S:T572I from #2548
JN.1.1.7	Alias of B.1.1.529.2.86.1.1.1.7, S:S31F, from sars-cov-2-variants/lineage-proposals#1157
LC.1	Alias of B.1.1.529.2.86.1.1.1.7.1, S:R346T
JN.1.1.8	Alias of B.1.1.529.2.86.1.1.1.8, S:F456L (T22930A), S:H445P, ORF1a:S2083I, C850T, from sars-cov-2-variants/lineage-proposals#1521
JN.1.1.9	Alias of B.1.1.529.2.86.1.1.1.9, G2035A, on C9142T branch, China, from sars-cov-2-variants/lineage-proposals#1525
JN.1.1.10	Alias of B.1.1.529.2.86.1.1.1.10, C23557T, Ukraine
JN.1.2	Alias of B.1.1.529.2.86.1.1.2, S:M1229I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1087
JN.1.2.1	Alias of B.1.1.529.2.86.1.1.2.1, S:H1101Y, Ireland, from sars-cov-2-variants/lineage-proposals#1322
JN.1.3	Alias of B.1.1.529.2.86.1.1.3, ORF8:Q18*, Netherlands
JN.1.4	Alias of B.1.1.529.2.86.1.1.4, ORF1a:T170I, Denmark/Singapore, from #2381
JN.1.4.1	Alias of B.1.1.529.2.86.1.1.4.1, S:E654V, Ireland, from sars-cov-2-variants/lineage-proposals#1175
JN.1.4.2	Alias of B.1.1.529.2.86.1.1.4.2, S:N185D, after T18453C, USA, from #2462
LL.1	Alias of B.1.1.529.2.86.1.1.4.2.1, S:F456L (T22930A), S:S680F, USA, from sars-cov-2-variants/lineage-proposals#1253
JN.1.4.3	Alias of B.1.1.529.2.86.1.1.4.3, S:T572I, USA, from #2487
KQ.1	Alias of B.1.1.529.2.86.1.1.4.3.1, S:R346T, USA from #2487
JN.1.4.4	Alias of B.1.1.529.2.86.1.1.4.4, S:R346T, from sars-cov-2-variants/lineage-proposals#1089
JN.1.4.5	Alias of B.1.1.529.2.86.1.1.4.5, ORF8:S103L, after T18453C, from #2426
KV.1	Alias of B.1.1.529.2.86.1.1.4.5.1, S:S680F, after C28948T then A2356T
KV.2	Alias of B.1.1.529.2.86.1.1.4.5.2, S:T572I, ORF1a:P971L, C11956T, USA, from sars-cov-2-variants/lineage-proposals#1097
JN.1.4.6	Alias of B.1.1.529.2.86.1.1.4.6, S:T572I, after T18453C, from sars-cov-2-variants/lineage-proposals#1097
JN.1.4.7	Alias of B.1.1.529.2.86.1.1.4.7, ORF3a:G18D
LE.1	Alias of B.1.1.529.2.86.1.1.4.7.1, S:R346T, Africa, from sars-cov-2-variants/lineage-proposals#1089
LE.1.1	Alias of B.1.1.529.2.86.1.1.4.7.1.1, S:F456V, from sars-cov-2-variants/lineage-proposals#1089
LE.1.2	Alias of B.1.1.529.2.86.1.1.4.7.1.2, S:K304N
LE.1.3	Alias of B.1.1.529.2.86.1.1.4.7.1.3, S:L84V, ORF7a:T120I, Kenya
LE.1.3.1	Alias of B.1.1.529.2.86.1.1.4.7.1.3.1, S:Q173K, S:F456L (T22928C), ORF7a:A66V, from sars-cov-2-variants/lineage-proposals#1612
LE.2	Alias of B.1.1.529.2.86.1.1.4.7.2, S:R346S, C7423T
JN.1.4.8	Alias of B.1.1.529.2.86.1.1.4.8, S:S60P, T13578C, USA，from #2625
JN.1.4.9	Alias of B.1.1.529.2.86.1.1.4.9, S:F456L, on branch with JN.1.4.2/5/6 (T18453C), from #2577
JN.1.5	Alias of B.1.1.529.2.86.1.1.5, ORF1b:V1271T, Singapore/Malaysia/Indonesia, from #2419
JN.1.6	Alias of B.1.1.529.2.86.1.1.6, G22627A
JN.1.6.1	Alias of B.1.1.529.2.86.1.1.6.1, S:R346T, Sweden, from sars-cov-2-variants/lineage-proposals#1089
JN.1.7	Alias of B.1.1.529.2.86.1.1.7, S:T572I, S:E1150D, USA/France, from sars-cov-2-variants/lineage-proposals#1097
JN.1.7.1	Alias of B.1.1.529.2.86.1.1.7.1, S:R346K, England, from sars-cov-2-variants/lineage-proposals#1371
JN.1.7.2	Alias of B.1.1.529.2.86.1.1.7.2, ORF1b:C1563F, Americas
JN.1.7.3	Alias of B.1.1.529.2.86.1.1.7.3, S:R346T, from sars-cov-2-variants/lineage-proposals#1343
JN.1.7.4	Alias of B.1.1.529.2.86.1.1.7.4, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1253
JN.1.7.5	Alias of B.1.1.529.2.86.1.1.7.5, ORF1a:H3395Y, from sars-cov-2-variants/lineage-proposals#1374
LK.1	Alias of B.1.1.529.2.86.1.1.7.5.1, S:445P, ORF1a:R1170C, USA/Canada, from sars-cov-2-variants/lineage-proposals#1374
LK.2	Alias of B.1.1.529.2.86.1.1.7.5.2, S:R346T
LK.2.1	Alias of B.1.1.529.2.86.1.1.7.5.2.1, S:S455A, S:T547K, Central America
JN.1.7.6	Alias of B.1.1.529.2.86.1.1.7.6, S:S60P, ORF1a:P1609S, Wales
JN.1.7.7	Alias of B.1.1.529.2.86.1.1.7.7, ORF1b:K2557R 
JN.1.7.8	Alias of B.1.1.529.2.86.1.1.7.8, S:F456L (22930A), S:185-189del, N:365L, Central America
MQ.1	Alias of B.1.1.529.2.86.1.1.7.8.1, S:T95I, S:R346T, from #2710
MQ.2	Alias of B.1.1.529.2.86.1.1.7.8.2, S:T678I
JN.1.7.9	Alias of B.1.1.529.2.86.1.1.7.9, G347A, C1057T, C7834T, S:F456L (22930A)
JN.1.8	Alias of B.1.1.529.2.86.1.1.8, ORF7a:T28I
JN.1.8.1	Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, after A12928G, USA/Denmark, from sars-cov-2-variants/lineage-proposals#1097
JN.1.8.2	Alias of B.1.1.529.2.86.1.1.8.2, S:R346T, after A12928G, from sars-cov-2-variants/lineage-proposals#1089
KY.1	Alias of B.1.1.529.2.86.1.1.8.2.1, ORF1a:N3774D, Nigeria
JN.1.8.3	Alias of B.1.1.529.2.86.1.1.8.3, C13821T, C14925T
JN.1.8.4	Alias of B.1.1.529.2.86.1.1.8.4, S:G946R
JN.1.9	Alias of B.1.1.529.2.86.1.1.9, S:Q183H, USA/UK/Canada, from #2410
JN.1.9.1	Alias of B.1.1.529.2.86.1.1.9.1, S:T572I, ORF1a:A3143V, from sars-cov-2-variants/lineage-proposals#1097
JN.1.9.2	Alias of B.1.1.529.2.86.1.1.9.2, S:R346T
LB.1	Alias of B.1.1.529.2.86.1.1.9.2.1, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1089
LB.1.1	Alias of B.1.1.529.2.86.1.1.9.2.1.1, S:V1104L, Canada
LB.1.2	Alias of B.1.1.529.2.86.1.1.9.2.1.2, ORF1b:G2068R
LB.1.2.1	Alias of B.1.1.529.2.86.1.1.9.2.1.2.1, S:R190T, from sars-cov-2-variants/lineage-proposals#1559
LB.1.2.2	Alias of B.1.1.529.2.86.1.1.9.2.1.2.2, S:T572I, C22075T
LB.1.2.3	Alias of B.1.1.529.2.86.1.1.9.2.1.2.3, S:F175L, ORF1a:I1568F
LB.1.3	Alias of B.1.1.529.2.86.1.1.9.2.1.3, ORF1b:T1555I
LB.1.3.1	Alias of B.1.1.529.2.86.1.1.9.2.1.3.1, S:445P, N:T379I, from sars-cov-2-variants/lineage-proposals#1620
LB.1.3.2	Alias of B.1.1.529.2.86.1.1.9.2.1.3.2, C25413T
MH.1	Alias of B.1.1.529.2.86.1.1.9.2.1.3.2.1, S:T572I
LB.1.3.3	Alias of B.1.1.529.2.86.1.1.9.2.1.3.3, S:K182R, from #2723
LB.1.4	Alias of B.1.1.529.2.86.1.1.9.2.1.4, ORF1a:A1473V
LB.1.4.1	Alias of B.1.1.529.2.86.1.1.9.2.1.4.1, S:R190S
LB.1.4.2	Alias of B.1.1.529.2.86.1.1.9.2.1.4.2, S:A879S, ORF1a:E472D, USA
LB.1.4.3	Alias of B.1.1.529.2.86.1.1.9.2.1.4.3, S:A845S, USA
LB.1.5	Alias of B.1.1.529.2.86.1.1.9.2.1.5, S:L1143F, ORF1b:T1621I, Asia，from sars-cov-2-variants/lineage-proposals#1557
LB.1.6	Alias of B.1.1.529.2.86.1.1.9.2.1.6, S:I670M, England/Canada
LB.1.7	Alias of B.1.1.529.2.86.1.1.9.2.1.7, ORF1a:L1507F, G21123T
LB.1.7.1	Alias of B.1.1.529.2.86.1.1.9.2.1.7.1, S:N148T, USA-NY
LB.1.7.2	Alias of B.1.1.529.2.86.1.1.9.2.1.7.2, S:S680P
LB.1.7.3	Alias of B.1.1.529.2.86.1.1.9.2.1.7.3, S:R34C
LB.1.8	Alias of B.1.1.529.2.86.1.1.9.2.1.8, ORF1a:I785V
LB.1.9	Alias of B.1.1.529.2.86.1.1.9.2.1.9, S:K478T (reversion), G20931T, T29194C, C15960T, India
JN.1.10	Alias of B.1.1.529.2.86.1.1.10, S:T95I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1135
JN.1.11	Alias of B.1.1.529.2.86.1.1.11, S:V1104L, G17334T, India, from #2446
JN.1.11.1	Alias of B.1.1.529.2.86.1.1.11.1, S:F456L (T22928C), after ORF1a:T2283I, India, from sars-cov-2-variants/lineage-proposals#1253
KP.1	Alias of B.1.1.529.2.86.1.1.11.1.1, S:K1086R, from sars-cov-2-variants/lineage-proposals#1364
KP.1.1	Alias of B.1.1.529.2.86.1.1.11.1.1.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089
KP.1.1.1	Alias of B.1.1.529.2.86.1.1.11.1.1.1.1, S:K182N, after ORF1b:L2213F, from #2510
MG.1	Alias of B.1.1.529.2.86.1.1.11.1.1.1.1.1, S:T572I, S:679N, ORF1a:V3091I
KP.1.1.2	Alias of B.1.1.529.2.86.1.1.11.1.1.1.2, S:P1162S, T2152C, from sars-cov-2-variants/lineage-proposals#1541
KP.1.1.3	Alias of B.1.1.529.2.86.1.1.11.1.1.1.3, C4999T, many with S:S31del, from sars-cov-2-variants/lineage-proposals#1502
LP.1	Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1, S:M1229I,from sars-cov-2-variants/lineage-proposals#1591
LP.1.1	Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1.1, S:S255F, Dominican Republic, from sars-cov-2-variants/lineage-proposals#1633
LP.1.2	Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1.2, S:R190S, T18300A, USA
LP.2	Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.2, S:S71Y, ORF1b:T2286I
LP.3	Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.3, S:K182E, ORF1b:R276S, Singapore
LP.4	Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.4, S:T572I, ORF8:A65V
KP.1.1.4	Alias of B.1.1.529.2.86.1.1.11.1.1.1.4, S:R214H, C11866T, C23929T,from sars-cov-2-variants/lineage-proposals#1593
KP.1.1.5	Alias of B.1.1.529.2.86.1.1.11.1.1.1.5, S:F59S
MU.1	Alias of B.1.1.529.2.86.1.1.11.1.1.1.5.1, S:T572I, ORF1a:P4339T, ORF1b:T1902I
KP.1.2	Alias of B.1.1.529.2.86.1.1.11.1.1.2, S:T572I, from sars-cov-2-variants/lineage-proposals#1097
KP.2	Alias of B.1.1.529.2.86.1.1.11.1.2, S:R346T on JN.1.11.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089
KP.2.1	Alias of B.1.1.529.2.86.1.1.11.1.2.1, S:Q1201K, from sars-cov-2-variants/lineage-proposals#1440
KP.2.2	Alias of B.1.1.529.2.86.1.1.11.1.2.2, S:F59L, S:K1266R, from sars-cov-2-variants/lineage-proposals#1446
KP.2.2.1	Alias of B.1.1.529.2.86.1.1.11.1.2.2.1, S:T22N, ORF1b:K2660R
KP.2.3	Alias of B.1.1.529.2.86.1.1.11.1.2.3, S:H146Q, ORF3a:K67N, S:31del, from sars-cov-2-variants/lineage-proposals#1459
KP.2.3.1	Alias of B.1.1.529.2.86.1.1.11.1.2.3.1, S:A475V, from sars-cov-2-variants/lineage-proposals#1548
KP.2.3.2	Alias of B.1.1.529.2.86.1.1.11.1.2.3.2, S:G184V
KP.2.3.3	Alias of B.1.1.529.2.86.1.1.11.1.2.3.3, S:N185T
KP.2.3.4	Alias of B.1.1.529.2.86.1.1.11.1.2.3.4, S:445P, A15759G, C27804T, from sars-cov-2-variants/lineage-proposals#1596
KP.2.3.5	Alias of B.1.1.529.2.86.1.1.11.1.2.3.5, S:K535T, A1087G
KP.2.3.6	Alias of B.1.1.529.2.86.1.1.11.1.2.3.6, S:T572I on a C28714T branch
KP.2.3.7	Alias of B.1.1.529.2.86.1.1.11.1.2.3.7, ORF1a:T2121A
MW.1	Alias of B.1.1.529.2.86.1.1.11.1.2.3.7.1, S:Q239R, ORF1a:I785V, ORF6:L16I
KP.2.4	Alias of B.1.1.529.2.86.1.1.11.1.2.4, S:T250N, from sars-cov-2-variants/lineage-proposals#1524
KP.2.5	Alias of B.1.1.529.2.86.1.1.11.1.2.5, S:N185D, from sars-cov-2-variants/lineage-proposals#1527
KP.2.6	Alias of B.1.1.529.2.86.1.1.11.1.2.6, S:W64R, S:F32del
KP.2.7	Alias of B.1.1.529.2.86.1.1.11.1.2.7, S:S31F, after T22795G
KP.2.8	Alias of B.1.1.529.2.86.1.1.11.1.2.8, S:S60P, from sars-cov-2-variants/lineage-proposals#1546
KP.2.9	Alias of B.1.1.529.2.86.1.1.11.1.2.9, S:T572I, from sars-cov-2-variants/lineage-proposals#1089
KP.2.10	Alias of B.1.1.529.2.86.1.1.11.1.2.10, S:F59S, Singapore, from sars-cov-2-variants/lineage-proposals#1553
KP.2.11	Alias of B.1.1.529.2.86.1.1.11.1.2.11, S:F56V, ORF1a:T2093I, England, from sars-cov-2-variants/lineage-proposals#1520
KP.2.12	Alias of B.1.1.529.2.86.1.1.11.1.2.12, S:V1176F, G25088T, Australia, from sars-cov-2-variants/lineage-proposals#1550
KP.2.13	Alias of B.1.1.529.2.86.1.1.11.1.2.13, S:K478E, N:P6T, C9565T, C24553T, USA/Canada
KP.2.14	Alias of B.1.1.529.2.86.1.1.11.1.2.14, S:T22N, S:S31F, S:G184V, from sars-cov-2-variants/lineage-proposals#1578
KP.2.15	Alias of B.1.1.529.2.86.1.1.11.1.2.15, A10861G, S:31del, USA/Canada
KP.2.15.1	Alias of B.1.1.529.2.86.1.1.11.1.2.15.1, S:T572I, from #2711
KP.2.16	Alias of B.1.1.529.2.86.1.1.11.1.2.16, ORF8:F6S
KP.2.17	Alias of B.1.1.529.2.86.1.1.11.1.2.17, S:G35R, C23758T, C7765T, T14418C, Singapore
KP.2.18	Alias of B.1.1.529.2.86.1.1.11.1.2.18, S:T22N, on T22795G branch
KP.2.19	Alias of B.1.1.529.2.86.1.1.11.1.2.19, S:S31del, ORF1a:V28I, Guatemala, from #2720
KP.2.20	Alias of B.1.1.529.2.86.1.1.11.1.2.20, ORF1b:D436N, Asia
KP.2.20.1	Alias of B.1.1.529.2.86.1.1.11.1.2.20.1, S:T572I, S:K1266R, Australia
KP.2.22	Alias of B.1.1.529.2.86.1.1.11.1.2.22, S:S31del, ORF1a:V3718F
KP.2.23	Alias of B.1.1.529.2.86.1.1.11.1.2.23, S:S31del, ORF3a:A110S, ORF8:G77S
KP.2.24	Alias of B.1.1.529.2.86.1.1.11.1.2.24, S:S31del, C9286T, C14919T
KP.2.25	Alias of B.1.1.529.2.86.1.1.11.1.2.25, ORF1a:P1803L, C14220T
KP.2.25.1	Alias of B.1.1.529.2.86.1.1.11.1.2.25.1, S:I934V, S:N30K, China
KP.2.25.2	Alias of B.1.1.529.2.86.1.1.11.1.2.25.2, S:K558N
KP.2.25.3	Alias of B.1.1.529.2.86.1.1.11.1.2.25.2, S:P793S
KP.2.26	Alias of B.1.1.529.2.86.1.1.11.1.2.26, S:T22N, S:S31P, S:K478T (on T25039C branch)
KP.3	Alias of B.1.1.529.2.86.1.1.11.1.3, S:Q493E, from sars-cov-2-variants/lineage-proposals#1410
KP.3.1	Alias of B.1.1.529.2.86.1.1.11.1.3.1, G15372T, A19722G
KP.3.1.1	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1, ORF1a:S4286C, C12616T, S:S31del, Spain, from sars-cov-2-variants/lineage-proposals#1563
MC.1	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1, S:T572I, from sars-cov-2-variants/lineage-proposals#1638
MC.1.1	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1.1, S:A942S, C13297T, C14220T
MC.2	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.2, S:A845S
MC.2.1	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.2.1, S:R237K
MC.3	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.3, S:G72R, Spain
MC.4	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.4, S:S98F, Spain
MC.5	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.5, S:G1219C, Spain
MC.6	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.6, ORF1a:P769S, ORF1a:G2091S
MC.7	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.7, S:A397V
MC.8	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.8, C9803T
MC.8.1	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.8.1, S:T572I
MC.9	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.9, ORF3a:K75N, ORF1b:A1219S
MC.10	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.10, C16332T
MC.10.1	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.10.1, S:A435S
MC.11	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.11, C17430T
MC.11.1	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.11.1, S:S256L, Europe
MC.12	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.12, S:G72E
MC.13	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.13, C10681T
MC.13.1	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.13.1, S:S254F, USA
MC.14	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.14, S:T259R
MC.15	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.15, S:K182R
MC.16	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.16, G2890A
MC.17	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.17, S:A575S, C5512T
MC.18	Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.18, S:T259R
KP.3.1.2	Alias of B.1.1.529.2.86.1.1.11.1.3.1.2, S:S151I，from sars-cov-2-variants/lineage-proposals#1589
KP.3.1.3	Alias of B.1.1.529.2.86.1.1.11.1.3.1.3, S:S31F,from sars-cov-2-variants/lineage-proposals#1576
KP.3.1.4	Alias of B.1.1.529.2.86.1.1.11.1.3.1.4, ORF1b:P1675S,from #2627
MM.1	Alias of B.1.1.529.2.86.1.1.11.1.3.1.4.1, S:S680P, Europe
MM.2	Alias of B.1.1.529.2.86.1.1.11.1.3.1.4.2, S:G35R, S:N185D
KP.3.1.5	Alias of B.1.1.529.2.86.1.1.11.1.3.1.5, S:N556K, ORF1a:Q998H, ORF3a:I186V, England, from sars-cov-2-variants/lineage-proposals#1614
KP.3.1.6	Alias of B.1.1.529.2.86.1.1.11.1.3.1.6, T19305C
MK.1	Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.1, S:S31F, UK
MK.2	Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.2, S:D745G, after E:L21F
MK.3	Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.3, S:R346T, S:H445R
KP.3.1.7	Alias of B.1.1.529.2.86.1.1.11.1.3.1.7, S:L84I, from #2709
KP.3.1.8	Alias of B.1.1.529.2.86.1.1.11.1.3.1.8, S:F59S, A9235G, Georgia
MY.1	Alias of B.1.1.529.2.86.1.1.11.1.3.1.8.1, S:P174S, ORF3a:T64I, Georgia
KP.3.2	Alias of B.1.1.529.2.86.1.1.11.1.3.2, A2611C, C22858T
KP.3.2.1	Alias of B.1.1.529.2.86.1.1.11.1.3.2.1, S:A263V, Australia/Singapore, from sars-cov-2-variants/lineage-proposals#1556
KP.3.2.2	Alias of B.1.1.529.2.86.1.1.11.1.3.2.2, S:W258R
KP.3.2.3	Alias of B.1.1.529.2.86.1.1.11.1.3.2.3, ORF3a:S40P, C11518T
LW.1	Alias of B.1.1.529.2.86.1.1.11.1.3.2.3.1, S:K182E, England
LW.1.1	Alias of B.1.1.529.2.86.1.1.11.1.3.2.3.1.1, S:T33I
LW.1.2	Alias of B.1.1.529.2.86.1.1.11.1.3.2.3.1.2, S:T22N
KP.3.2.4	Alias of B.1.1.529.2.86.1.1.11.1.3.2.4, ORF3a:L73F
KP.3.2.5	Alias of B.1.1.529.2.86.1.1.11.1.3.2.5, S:V62F, from sars-cov-2-variants/lineage-proposals#1604
KP.3.2.6	Alias of B.1.1.529.2.86.1.1.11.1.3.2.6, S:S31P, G11761A, G25617A, Asia
KP.3.3	Alias of B.1.1.529.2.86.1.1.11.1.3.3, N:R204P, from sars-cov-2-variants/lineage-proposals#1531
KP.3.3.1	Alias of B.1.1.529.2.86.1.1.11.1.3.3.1, S:T547K, ORF3a:F87S, from sars-cov-2-variants/lineage-proposals#1651
KP.3.3.2	Alias of B.1.1.529.2.86.1.1.11.1.3.3.2, S:A435S, ORF1a:N4134T, England/Canada
KP.3.3.3	Alias of B.1.1.529.2.86.1.1.11.1.3.3.3, G9424T, Japan/Canada
ML.1	Alias of B.1.1.529.2.86.1.1.11.1.3.3.3.1, S:681H
ML.2	Alias of B.1.1.529.2.86.1.1.11.1.3.3.3.2, S:Q677H, USA
KP.3.3.4	Alias of B.1.1.529.2.86.1.1.11.1.3.3.4, ORF1a:I1367L, from #2707
MR.1	Alias of B.1.1.529.2.86.1.1.11.1.3.3.4.1, S:S31del, ORF1a:V1236I, from #2704
KP.3.4	Alias of B.1.1.529.2.86.1.1.11.1.3.4, ORF3a:L73F, C25521T, Asia
KP.3.4.1	Alias of B.1.1.529.2.86.1.1.11.1.3.4.1, S:S31F, N:A134V, ORF1a:E1192K
KP.3.5	Alias of B.1.1.529.2.86.1.1.11.1.3.5, S:G213E, most with C1420T, America
KP.3.6	Alias of B.1.1.529.2.86.1.1.11.1.3.6, S:T22N, Canada
KP.4	Alias of B.1.1.529.2.86.1.1.11.1.4, C6070T, India
KP.4.1	Alias of B.1.1.529.2.86.1.1.11.1.4.1, S:R346T, C19884T, from sars-cov-2-variants/lineage-proposals#1089
KP.4.1.1	Alias of B.1.1.529.2.86.1.1.11.1.4.1.1, S:W258R, India from #2521
KP.4.1.2	Alias of B.1.1.529.2.86.1.1.11.1.4.1.2, S:L441V, from sars-cov-2-variants/lineage-proposals#1611
KP.4.1.3	Alias of B.1.1.529.2.86.1.1.11.1.4.1.3, ORF1a:M598V, A5245G, S:31del 
KP.4.2	Alias of B.1.1.529.2.86.1.1.11.1.4.2, S:R346T, S:K187R, from sars-cov-2-variants/lineage-proposals#1089
KP.4.2.1	Alias of B.1.1.529.2.86.1.1.11.1.4.2.1, S:S31F
KP.4.2.2	Alias of B.1.1.529.2.86.1.1.11.1.4.2.2, S:F59I
KP.4.2.3	Alias of B.1.1.529.2.86.1.1.11.1.4.2.3, S:G35R, ORF1a:G519S, ORF1a:I2227V
KP.5	Alias of B.1.1.529.2.86.1.1.11.1.5, S:T572I, from sars-cov-2-variants/lineage-proposals#1097
KP.6	Alias of B.1.1.529.2.86.1.1.11.1.6, S:R346I
JN.1.12	Alias of B.1.1.529.2.86.1.1.12, S:F456V, ORF7a:A8T, from sars-cov-2-variants/lineage-proposals#1253
JN.1.13	Alias of B.1.1.529.2.86.1.1.13, S:A1087S, after C26894T, C25680T, USA, from #2464
JN.1.13.1	Alias of B.1.1.529.2.86.1.1.13.1, S:R346T, S:F59S, USA, from sars-cov-2-variants/lineage-proposals/issues/1386
KS.1	Alias of B.1.1.529.2.86.1.1.13.1.1, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1253
KS.1.1	Alias of B.1.1.529.2.86.1.1.13.1.1.1, S:T22N, Singapore/Taiwan/Canada, from sars-cov-2-variants/lineage-proposals#1565
KS.1.1.1	Alias of B.1.1.529.2.86.1.1.13.1.1.1.1, Orf1a:T609I (C2091T), Orf1a:N470T (A1674C) 
NC.1	Alias of B.1.1.529.2.86.1.1.13.1.1.1.1.1, S:R190S
KS.1.1.2	Alias of B.1.1.529.2.86.1.1.13.1.1.1.2, ORF1a:L2146F, C19716T
KS.1.2	Alias of B.1.1.529.2.86.1.1.13.1.1.2, S:T678I, Russia
KS.1.3	Alias of B.1.1.529.2.86.1.1.13.1.1.3, S:V642A, Dominican Republic
KS.1.4	Alias of B.1.1.529.2.86.1.1.13.1.1.4, C22414T, S:R237K
JN.1.14	Alias of B.1.1.529.2.86.1.1.14, S:R346S, after C26894T, C25680T, USA
JN.1.15	Alias of B.1.1.529.2.86.1.1.15, S:A688V
JN.1.15.1	Alias of B.1.1.529.2.86.1.1.15.1, S:F456L, ORF3a:R122S, Ecuador, from sars-cov-2-variants/lineage-proposals#1253
LU.1	Alias of B.1.1.529.2.86.1.1.15.1.1, S:R346T, after C19269T, from sars-cov-2-variants/lineage-proposals#1089
LU.2	Alias of B.1.1.529.2.86.1.1.15.1.2, S:R346T, after T20865C, from sars-cov-2-variants/lineage-proposals#1652
LU.2.1	Alias of B.1.1.529.2.86.1.1.15.1.2.1, S:L176F, Ecuador
LU.2.1.1	Alias of B.1.1.529.2.86.1.1.15.1.2.1.1, S:S60P, S:K182N, ORF1a:L204F, ORF1a:T1854I, Ecuador
LU.2.2	Alias of B.1.1.529.2.86.1.1.15.1.2.2, S:Q677P, ORF1a:T1000I, Ecuador
JN.1.16	Alias of B.1.1.529.2.86.1.1.16, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1253
JN.1.16.1	Alias of B.1.1.529.2.86.1.1.16.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089
LF.1	Alias of B.1.1.529.2.86.1.1.16.1.1, ORF1a:A1268T, ORF1a:S2103F
LF.1.1	Alias of B.1.1.529.2.86.1.1.16.1.1.1, S:P1263L, from sars-cov-2-variants/lineage-proposals#1448
LF.1.1.1	Alias of B.1.1.529.2.86.1.1.16.1.1.1.1, S:S31-, T19209C,from sars-cov-2-variants/lineage-proposals#1502
LF.2	Alias of B.1.1.529.2.86.1.1.16.1.2, ORF1a:K247R, ORF3a:Y184H, many with S:S31del, from sars-cov-2-variants/lineage-proposals#1502
LF.3	Alias of B.1.1.529.2.86.1.1.16.1.3, ORF1a:A4285V, Peru
LF.3.1	Alias of B.1.1.529.2.86.1.1.16.1.3.1, S:445P，from sars-cov-2-variants/lineage-proposals#1558
LF.3.1.1	Alias of B.1.1.529.2.86.1.1.16.1.3.1.1, S:L1143F, USA-CO, from sars-cov-2-variants/lineage-proposals#1558
LF.3.1.2	Alias of B.1.1.529.2.86.1.1.16.1.3.1.2, S:D745A, South America
LF.4	Alias of B.1.1.529.2.86.1.1.16.1.4, N:R385K, ORF1a:T4368I
LF.4.1	Alias of B.1.1.529.2.86.1.1.16.1.4.1, S:31del, ORF1a:G519S, ORF8:Q29*, from sars-cov-2-variants/lineage-proposals#1590
LF.5	Alias of B.1.1.529.2.86.1.1.16.1.5, S:T33A, S:N185D, C28660T
LF.6	Alias of B.1.1.529.2.86.1.1.16.1.6, T3172G, T17859C, Portugal/Spain, from #2589
LF.7	Alias of B.1.1.529.2.86.1.1.16.1.7, S:T22N, S:S31P, S:K182R, S:R190S, S:K444R, ORF9b:I5T, Senegal, from #2733
LF.7.1	Alias of B.1.1.529.2.86.1.1.16.1.7.1, C6310T
LF.7.1.1	Alias of B.1.1.529.2.86.1.1.16.1.7.1.1, S:Q677L
LF.7.2	Alias of B.1.1.529.2.86.1.1.16.1.7.2, T20799C
LF.7.2.1	Alias of B.1.1.529.2.86.1.1.16.1.7.2.1, S:A475V
LF.7.3	Alias of B.1.1.529.2.86.1.1.16.1.7.3, C17436T
LF.7.4	Alias of B.1.1.529.2.86.1.1.16.1.7.4, S:T961M, G25494A
LF.8	Alias of B.1.1.529.2.86.1.1.16.1.8, S:M153I, C3244T, A18432T, C27110T
LF.8.1	Alias of B.1.1.529.2.86.1.1.16.1.8.1, S:S31F
LF.8.1.1	Alias of B.1.1.529.2.86.1.1.16.1.8.1.1, S:T22N
ND.1	Alias of B.1.1.529.2.86.1.1.16.1.8.1.1.1, ORF1a:L4391F
ND.1.1	Alias of B.1.1.529.2.86.1.1.16.1.8.1.1.1.1, S:K478T
ND.2	Alias of B.1.1.529.2.86.1.1.16.1.8.1.1.2, S:K478E
ND.3	Alias of B.1.1.529.2.86.1.1.16.1.8.1.1.3, S:K478I
LF.9	Alias of B.1.1.529.2.86.1.1.16.1.9, S:S60P
LF.9.1	Alias of B.1.1.529.2.86.1.1.16.1.9.1, S:N185D
JN.1.16.2	Alias of B.1.1.529.2.86.1.1.16.2, C4777T, from sars-cov-2-variants/lineage-proposals#1253
LA.1	Alias of B.1.1.529.2.86.1.1.16.2.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1253
LA.2	Alias of B.1.1.529.2.86.1.1.16.2.2, S:R346I, from sars-cov-2-variants/lineage-proposals#1089
JN.1.16.3	Alias of B.1.1.529.2.86.1.1.16.3, S:T572I
JN.1.16.4	Alias of B.1.1.529.2.86.1.1.16.4, S:Q493E, ORF1a:G400S, ORF7a:F59K, East Asia
MT.1	Alias of B.1.1.529.2.86.1.1.16.4.1, S:S31P, N:P279S
JN.1.16.5	Alias of B.1.1.529.2.86.1.1.16.5, S:T22N, S:Q493E
JN.1.17	Alias of B.1.1.529.2.86.1.1.17, S:A222V, USA
JN.1.18	Alias of B.1.1.529.2.86.1.1.18, S:R346T, directly on JN.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089
JN.1.18.1	Alias of B.1.1.529.2.86.1.1.18.1, S:T250N, from sars-cov-2-variants/lineage-proposals#1414
LQ.1	Alias of B.1.1.529.2.86.1.1.18.1.1, S:F456L (22928C),from #2596
LQ.1.1	Alias of B.1.1.529.2.86.1.1.18.1.1.1, S:P272H,from #2596
LQ.2	Alias of B.1.1.529.2.86.1.1.18.1.2, S:N556K, China,from sars-cov-2-variants/lineage-proposals#1414
LQ.3	Alias of B.1.1.529.2.86.1.1.18.1.3, ORF1a:T1761I, Russia
JN.1.18.2	Alias of B.1.1.529.2.86.1.1.18.2, S:F59S, after C4331T, T22321C, from sars-cov-2-variants/lineage-proposals#1441
LZ.1	Alias of B.1.1.529.2.86.1.1.18.2.1, S:F456L (T22930A), N:A152T, ORF1a:I740V from #2654
LZ.1.1	Alias of B.1.1.529.2.86.1.1.18.2.1.1, S:P217S, S:N1125S from #2654
LZ.2	Alias of B.1.1.529.2.86.1.1.18.2.2, S:F456L (T22928C), ORF1a:K1226E, China
LZ.2.1	Alias of B.1.1.529.2.86.1.1.18.2.2.1, ORF10:Q29*
JN.1.18.3	Alias of B.1.1.529.2.86.1.1.18.3, S:F456V (T22928G), from sars-cov-2-variants/lineage-proposals#1253
MA.1	Alias of B.1.1.529.2.86.1.1.18.3.1, S:R190S, S:31del, from sars-cov-2-variants/lineage-proposals#1635
MA.1.1	Alias of B.1.1.529.2.86.1.1.18.3.1.1, S:E780A
MA.1.1.1	Alias of B.1.1.529.2.86.1.1.18.3.1.1.1, S:H445P
JN.1.18.4	Alias of B.1.1.529.2.86.1.1.18.4, S:F456L (T22930G), ORF6:I60T, T23036C, Ghana from #2567
LH.1	Alias of B.1.1.529.2.86.1.1.18.4.1, S:K182I from #2567
LH.2	Alias of B.1.1.529.2.86.1.1.18.4.2, S:I197V, S:P251H from #2567
JN.1.18.5	Alias of B.1.1.529.2.86.1.1.18.5, S:F456L (T22930A), from sars-cov-2-variants/lineage-proposals#1089
LS.1	Alias of B.1.1.529.2.86.1.1.18.5.1, S:Y28H, S:L189A, S:184-188del, ORF1a:E940D
JN.1.18.6	Alias of B.1.1.529.2.86.1.1.18.6, S:F456L (T22928C), S:F59S from #2623
LY.1	Alias of B.1.1.529.2.86.1.1.18.6.1, S:F65Y, S:Q183P from #2623
LY.2	Alias of B.1.1.529.2.86.1.1.18.6.2, S:Q183H, C2143T
JN.1.18.7	Alias of B.1.1.529.2.86.1.1.18.7, S:T22N, S:F59S, S:D1260Y from #2623
MN.1	Alias of B.1.1.529.2.86.1.1.18.7.1, S:D80Y, S:P174S, S:S689N, England/Wales
JN.1.18.8	Alias of B.1.1.529.2.86.1.1.18.8, S:S31del, ORF1a:A690V, ORF1b:S2339F, France
JN.1.19	Alias of B.1.1.529.2.86.1.1.19, ORF8:I71V
JN.1.20	Alias of B.1.1.529.2.86.1.1.20, S:S31F, directly on JN.1 polytomy
JN.1.21	Alias of B.1.1.529.2.86.1.1.21, S:H1058Y, from sars-cov-2-variants/lineage-proposals#1162
JN.1.22	Alias of B.1.1.529.2.86.1.1.22, ORF1a:S505F, C13019T, from #2465
JN.1.23	Alias of B.1.1.529.2.86.1.1.23, S:K444R, S:Y453F, ORF1a:A307V, ORF1a:P2144L, Brazil, from #2488
JN.1.23.1	Alias of B.1.1.529.2.86.1.1.23.1, S:V1264L, S:N137K, Brazil, from sars-cov-2-variants/lineage-proposals#1552
JN.1.24	Alias of B.1.1.529.2.86.1.1.24, S:C1243F, USA
JN.1.24.1	Alias of B.1.1.529.2.86.1.1.24.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089
JN.1.25	Alias of B.1.1.529.2.86.1.1.25, C706T, A7708T, India
JN.1.25.1	Alias of B.1.1.529.2.86.1.1.25.1, S:R346T, India
LM.1	Alias of B.1.1.529.2.86.1.1.25.1.1, S:F456L, from sars-cov-2-variants/lineage-proposals#1089
JN.1.26	Alias of B.1.1.529.2.86.1.1.26, S:R346T, after C26894T, USA, from sars-cov-2-variants/lineage-proposals#1089
JN.1.27	Alias of B.1.1.529.2.86.1.1.27, S:M153I, after C26894T, C25680T, USA, from sars-cov-2-variants/lineage-proposals#1403
JN.1.28	Alias of B.1.1.529.2.86.1.1.28, C24034T, A29700G, East Asia/Oceania
JN.1.28.1	Alias of B.1.1.529.2.86.1.1.28.1, ORF1a:P1640L, C19545T, C24370T, from sars-cov-2-variants/lineage-proposals#1244
KW.1	Alias of B.1.1.529.2.86.1.1.28.1.1, S:T572I, Australia, from sars-cov-2-variants/lineage-proposals#1244
KW.1.1	Alias of B.1.1.529.2.86.1.1.28.1.1.1, S:F456L (T22928C), ORF1b:R2009K, Australia/Japan, from sars-cov-2-variants/lineage-proposals#1244
KW.1.1.1	Alias of B.1.1.529.2.86.1.1.28.1.1.1.1, S:T95S, Australia, from sars-cov-2-variants/lineage-proposals#1504
LG.1	Alias of B.1.1.529.2.86.1.1.28.1.1.1.1.1, S:R346T, Australia, from sars-cov-2-variants/lineage-proposals#1504
KW.1.2	Alias of B.1.1.529.2.86.1.1.28.1.1.2, S:K529T, Australia
JN.1.29	Alias of B.1.1.529.2.86.1.1.29, ORF1a:T3224A, after C2644T, Brazil
JN.1.29.1	Alias of B.1.1.529.2.86.1.1.29.1, S:F456L, from sars-cov-2-variants/lineage-proposals#1253
MJ.1	Alias of B.1.1.529.2.86.1.1.29.1.1, S:R346T, S:S31P, ORF1a:E2070K
JN.1.30	Alias of B.1.1.529.2.86.1.1.30, G21255T
JN.1.30.1	Alias of B.1.1.529.2.86.1.1.30.1, S:R346T, after T7789C, India, from sars-cov-2-variants/lineage-proposals#1089
KU.1	Alias of B.1.1.529.2.86.1.1.30.1.1, S:K182Q
KU.2	Alias of B.1.1.529.2.86.1.1.30.1.2, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1089
KU.2.1	Alias of B.1.1.529.2.86.1.1.30.1.2.1, S:S60P, USA
KU.2.2	Alias of B.1.1.529.2.86.1.1.30.1.2.2, S:G213E, UK
JN.1.31	Alias of B.1.1.529.2.86.1.1.31, ORF3a:V13L, C19186T, from sars-cov-2-variants/lineage-proposals#1319
JN.1.32	Alias of B.1.1.529.2.86.1.1.32, S:T572I, directly on JN.1 polytomy
JN.1.32.1	Alias of B.1.1.529.2.86.1.1.32.1, S:Q183H, from sars-cov-2-variants/lineage-proposals#1442
JN.1.34	Alias of B.1.1.529.2.86.1.1.34, S:S704L
JN.1.35	Alias of B.1.1.529.2.86.1.1.35, S:S680Y, after T18471C, Australia/New Zealand, from sars-cov-2-variants/lineage-proposals#1362
JN.1.36	Alias of B.1.1.529.2.86.1.1.36, S:Q677H, after A29086T, from sars-cov-2-variants/lineage-proposals#1326
JN.1.36.1	Alias of B.1.1.529.2.86.1.1.36.1, S:S680F, South Korea, from sars-cov-2-variants/lineage-proposals#1326
JN.1.37	Alias of B.1.1.529.2.86.1.1.37, S:S680F
JN.1.38	Alias of B.1.1.529.2.86.1.1.38, ORF1b:R1736K, USA
JN.1.38.1	Alias of B.1.1.529.2.86.1.1.38.1, S:G35S, ORF3a:G100S, USA, from #2475
JN.1.39	Alias of B.1.1.529.2.86.1.1.39, G2782T
JN.1.39.1	Alias of B.1.1.529.2.86.1.1.39.1, S:R346T, S:F456L (T22928C), C21034T, T25631C, A16011G, T6913C, from sars-cov-2-variants/lineage-proposals#1089
JN.1.39.2	Alias of B.1.1.529.2.86.1.1.39.2, S:R346T, T111C
JN.1.39.3	Alias of B.1.1.529.2.86.1.1.39.3, S:A67V, T111C, C5512T, China from #2498 (originally known as JN.1.33)
JN.1.40	Alias of B.1.1.529.2.86.1.1.40, S:S31P, Mexico, from sars-cov-2-variants/lineage-proposals#1451
JN.1.41	Alias of B.1.1.529.2.86.1.1.41, S:S1252F, on A29086T, USA, from sars-cov-2-variants/lineage-proposals#1256
JN.1.42	Alias of B.1.1.529.2.86.1.1.42, C5581A, South America
JN.1.42.1	Alias of B.1.1.529.2.86.1.1.42.1, S:F59S, from sars-cov-2-variants/lineage-proposals#1474
JN.1.42.2	Alias of B.1.1.529.2.86.1.1.42.2, S:R346T, Peru from #2494
MS.1	Alias of B.1.1.529.2.86.1.1.42.2.1, S:31del, ORF1a:E940G, USA/Guatemala
JN.1.43	Alias of B.1.1.529.2.86.1.1.43, A25237G
JN.1.43.1	Alias of B.1.1.529.2.86.1.1.43.1, C19488T, C29218T, Brazil
JN.1.44	Alias of B.1.1.529.2.86.1.1.44, ORF6:P57L, from sars-cov-2-variants/lineage-proposals#987
JN.1.44.1	Alias of B.1.1.529.2.86.1.1.44.1, S:R346T, Cameroon/France,from sars-cov-2-variants/lineage-proposals#1089
JN.1.45	Alias of B.1.1.529.2.86.1.1.45, G18756T
JN.1.46	Alias of B.1.1.529.2.86.1.1.46, ORF1a:L3116F, T4885C
JN.1.47	Alias of B.1.1.529.2.86.1.1.47, C8074T, C7594T
JN.1.47.1	Alias of B.1.1.529.2.86.1.1.47.1, S:S221L, USA/Mexico, from sars-cov-2-variants/lineage-proposals#1318
JN.1.47.2	Alias of B.1.1.529.2.86.1.1.47.2, S:T572I, S:R683Q, USA, from sars-cov-2-variants/lineage-proposals#1097
JN.1.48	Alias of B.1.1.529.2.86.1.1.48, G29134T, after T18471C, India
JN.1.48.1	Alias of B.1.1.529.2.86.1.1.48.1, S:S60P, S:R346T, S:F456L (T22928C), after ORF3a:A99V, on T3913A, C8092T branch from #2547
LD.1	Alias of B.1.1.529.2.86.1.1.48.1.1, S:T572I from #2547
JN.1.48.2	Alias of B.1.1.529.2.86.1.1.48.2, S:R346T, ORF1a:A427V, A3829G, India, from sars-cov-2-variants/lineage-proposals#1089
JN.1.48.3	Alias of B.1.1.529.2.86.1.1.48.3, S:60P, S:R346T, S:F456L, ORF3a:S60F, ORF1a:T1761I, on T3913A, C8092T branch, South Africa
JN.1.49	Alias of B.1.1.529.2.86.1.1.49, ORF3a:T89I, India
JN.1.49.1	Alias of B.1.1.529.2.86.1.1.49.1, S:R346T
MB.1	Alias of B.1.1.529.2.86.1.1.49.1.1, S:F456V (T22928G), S:S31F
MB.1.1	Alias of B.1.1.529.2.86.1.1.49.1.1.1, S:T22N, S:K182N, from sars-cov-2-variants/lineage-proposals#1659
MB.1.1.1	Alias of B.1.1.529.2.86.1.1.49.1.1.1.1, ORF1a:T224I, India
MV.1	Alias of B.1.1.529.2.86.1.1.49.1.1.1.1.1, S:K478T, India
MV.2	Alias of B.1.1.529.2.86.1.1.49.1.1.1.1.2, S:A67V
MB.1.1.2	Alias of B.1.1.529.2.86.1.1.49.1.1.1.2, T27288A
NA.1	Alias of B.1.1.529.2.86.1.1.49.1.1.1.2.1, C19200T, A20079G
NA.1.1	Alias of B.1.1.529.2.86.1.1.49.1.1.1.2.1.1, S:K444R
MB.1.1.3	Alias of B.1.1.529.2.86.1.1.49.1.1.1.3, G10465A
JN.1.49.2	Alias of B.1.1.529.2.86.1.1.49.2, S:F456L (T22930A)
JN.1.49.3	Alias of B.1.1.529.2.86.1.1.49.3, T18471C, China
JN.1.50	Alias of B.1.1.529.2.86.1.1.50, S:A67V, S:L249F, S:H445P, S:F456L (T22930G), Europe from #2587
JN.1.50.1	Alias of B.1.1.529.2.86.1.1.50.1, S:R346T from #2587
JN.1.50.2	Alias of B.1.1.529.2.86.1.1.50.2, ORF1a:N1540S (A4884G, T4885C)
ME.1	Alias of B.1.1.529.2.86.1.1.50.2.1, S:R346K
JN.1.51	Alias of B.1.1.529.2.86.1.1.51, C4795T
JN.1.51.1	Alias of B.1.1.529.2.86.1.1.51.1, S:F456L
LJ.1	Alias of B.1.1.529.2.86.1.1.51.1.1, S:T22N
JN.1.52	Alias of B.1.1.529.2.86.1.1.52, ORF1a:K3353R
JN.1.53	Alias of B.1.1.529.2.86.1.1.53, C15720T, Senegal
JN.1.53.1	Alias of B.1.1.529.2.86.1.1.53.1, C583T
LN.1	Alias of B.1.1.529.2.86.1.1.53.1.1, S:R346T
LN.1.1	Alias of B.1.1.529.2.86.1.1.53.1.1.1, S:F456L, S:478I
JN.1.54	Alias of B.1.1.529.2.86.1.1.54, A9085G
JN.1.54.1	Alias of B.1.1.529.2.86.1.1.54.1, S:F456L, S:V407I, Spain, from #2584
JN.1.55	Alias of B.1.1.529.2.86.1.1.55, ORF1a:K399R
JN.1.55.1	Alias of B.1.1.529.2.86.1.1.55.1, S:F456L, ORF1a:T1017I, Thailand, from sars-cov-2-variants/lineage-proposals#1253
JN.1.55.2	Alias of B.1.1.529.2.86.1.1.55.2, S:F456L, ORF1b:P2321H, Brazil, from sars-cov-2-variants/lineage-proposals#1253
JN.1.56	Alias of B.1.1.529.2.86.1.1.56, Orf3a:Q213K
JN.1.56.1	Alias of B.1.1.529.2.86.1.1.56.1, S:G181R, S:R346T, S:F456V, ORF1a:T1638I, Sinapore/South Korea from #2582
JN.1.57	Alias of B.1.1.529.2.86.1.1.57, ORF1b:A1219S, A11947G
JN.1.57.1	Alias of B.1.1.529.2.86.1.1.57.1, S:S60P, Taiwan/South Korea,from sars-cov-2-variants/lineage-proposals#1460
JN.1.58	Alias of B.1.1.529.2.86.1.1.58, ORF1b:K2557R
JN.1.58.1	Alias of B.1.1.529.2.86.1.1.58.1, S:S60P
JN.1.58.2	Alias of B.1.1.529.2.86.1.1.58.2, S:R346T
LR.1	Alias of B.1.1.529.2.86.1.1.58.2.1, S:F456L (22928C)
LR.2	Alias of B.1.1.529.2.86.1.1.58.2.2, S:F456V
LR.3	Alias of B.1.1.529.2.86.1.1.58.2.3, S:F456L (22930A), USA/Puerto Rico
JN.1.58.3	Alias of B.1.1.529.2.86.1.1.58.3, S:S31F
JN.1.59	Alias of B.1.1.529.2.86.1.1.59, ORF1a:A1204S
JN.1.59.1	Alias of B.1.1.529.2.86.1.1.59.1, S:S31del, S:R190S, S:R346T, ORF1a:I841V, Americas
JN.1.60	Alias of B.1.1.529.2.86.1.1.60, C4543T
JN.1.61	Alias of B.1.1.529.2.86.1.1.61, S:K444R, Brazil
JN.1.62	Alias of B.1.1.529.2.86.1.1.62, S:F456L (22928C), S:V62F, S:R681H, from sars-cov-2-variants/lineage-proposals#1253
JN.1.63	Alias of B.1.1.529.2.86.1.1.63, ORF1b:K82R
JN.1.63.1	Alias of B.1.1.529.2.86.1.1.63.1, ORF1a:D1513E, ORF1a:A2529S, Asia
JN.1.64	Alias of B.1.1.529.2.86.1.1.64, ORF1a:N2147S (A6705G) from #2560
JN.1.64.1	Alias of B.1.1.529.2.86.1.1.64.1, S:R346T from #2560
MD.1	Alias of B.1.1.529.2.86.1.1.64.1.1, S:F456L (T22930A) from #2560
MD.1.1	Alias of B.1.1.529.2.86.1.1.64.1.1.1, S:K679R from #2560
MD.1.1.1	Alias of B.1.1.529.2.86.1.1.64.1.1.1.1, S:H445P, ORF1a:K3353R, Australia/Taiwan
MD.1.2	Alias of B.1.1.529.2.86.1.1.64.1.1.2, S:F58Y, S:F59L, Philipines
MD.2	Alias of B.1.1.529.2.86.1.1.64.1.2, S:F456V, ORF1a:T2800I from #2560
MD.3	Alias of B.1.1.529.2.86.1.1.64.1.3, C1060T, C9319T, C28657T from #2560
MD.3.1	Alias of B.1.1.529.2.86.1.1.64.1.3.1, S:F456L (T22928C), ORF3a:L106F, C10138T, South Africa from #2560
MD.3.1.1	Alias of B.1.1.529.2.86.1.1.64.1.3.1.1, ORF9b:S50L (C28432T), South Africa
MD.3.1.2	Alias of B.1.1.529.2.86.1.1.64.1.3.1.2, S:I19- (S:T19I rev + S:21- if aligned against Wuhan-Hu-1), C12049T
MD.3.1.3	Alias of B.1.1.529.2.86.1.1.64.1.3.1.3, S:K182E
MD.3.1.4	Alias of B.1.1.529.2.86.1.1.64.1.3.1.4, S:S31F
JN.1.65	Alias of B.1.1.529.2.86.1.1.65, S:T572I, after T23629C, G25647T, A5053G, Spain from #2461
JN.1.65.1	Alias of B.1.1.529.2.86.1.1.65.1, S:F456L (22928C), A10420G, C5884T, C29149T, C20483T, Spain from #2461
MF.1	Alias of B.1.1.529.2.86.1.1.65.1.1, S:R346T, T21673C, pre-22981T from #2461
MF.2	Alias of B.1.1.529.2.86.1.1.65.1.2, S:S60P, S:W64L from #2461
JN.1.66	Alias of B.1.1.529.2.86.1.1.66, S:H445P, S:F456L (T22930A), S:T1117I, ORF1a:L2146F, ORF3a:L106F, Iceland/Sweden
JN.1.67	Alias of B.1.1.529.2.86.1.1.67, M:L46F
JN.1.67.1	Alias of B.1.1.529.2.86.1.1.67.1, S:F456L, China
MZ.1	Alias of B.1.1.529.2.86.1.1.67.1.1, S:S31F
JN.2	Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America, from #2284
JN.2.1	Alias of B.1.1.529.2.86.1.2.1, S:S31F, Sweden/Australia
JN.2.2	Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands, from #2433
JN.2.2.1	Alias of B.1.1.529.2.86.1.2.2.1, S:N487D, Netherlands
JN.2.3	Alias of B.1.1.529.2.86.1.2.3, S:V193L, from #2442
JN.2.4	Alias of B.1.1.529.2.86.1.2.4, S:L242F, Sweden
JN.2.5	Alias of B.1.1.529.2.86.1.2.5, S:L455S, Canada, USA, Lithuania, from sars-cov-2-variants/lineage-proposals#1173
JN.3	Alias of B.1.1.529.2.86.1.3, ORF1a:T2087I, Europe, from sars-cov-2-variants/lineage-proposals#892
JN.3.1	Alias of B.1.1.529.2.86.1.3.1, S:L922F, ORF7a:T28I, Spain
JN.3.2	Alias of B.1.1.529.2.86.1.3.2, N:H300Y, ORF1a:P892S, from #2445
JN.3.2.1	Alias of B.1.1.529.2.86.1.3.2.1, S:F456V, N:S327L, Germany, from #2445
JN.3.3	Alias of B.1.1.529.2.86.1.3.3, A5641G, C14478T, C21676T
JN.4	Alias of B.1.1.529.2.86.1.4, S:A475V, lacking C12815T of most BA.2.86.1, Belgium/Netherlands/Denmark, from sars-cov-2-variants/lineage-proposals#1009
JN.5	Alias of B.1.1.529.2.86.1.5, N:T135I
JN.5.1	Alias of B.1.1.529.2.86.1.5.1, S:A475S, T2950A, A28052G, C29541T, England/Belgium, from sars-cov-2-variants/lineage-proposals#954
JN.6	Alias of B.1.1.529.2.86.1.6, S:V193L
JN.7	Alias of B.1.1.529.2.86.1.7, S:G594S, Denmark, from sars-cov-2-variants/lineage-proposals#856
JN.8	Alias of B.1.1.529.2.86.1.8, S:T299I, Sweden/Denmark
JN.9	Alias of B.1.1.529.2.86.1.9, S:M1229I, Netherlands
JN.10	Alias of B.1.1.529.2.86.1.10, S:A475V, on T3565C branch with JN.1, Spain/France, from sars-cov-2-variants/lineage-proposals#954
JN.11	Alias of B.1.1.529.2.86.1.11, S:V1104L, Asia, from sars-cov-2-variants/lineage-proposals#1303
JN.11.1	Alias of B.1.1.529.2.86.1.11.1, S:L455S, from sars-cov-2-variants/lineage-proposals#1303
JN.12	Alias of B.1.1.529.2.86.1.12, S:F456V, ORF1a:A498G, from sars-cov-2-variants/lineage-proposals#1102
JN.13	Alias of B.1.1.529.2.86.1.13, A14397G
JN.13.1	Alias of B.1.1.529.2.86.1.13.1, S:A475V, USA/Malaysia, from sars-cov-2-variants/lineage-proposals#1386
JN.14	Alias of B.1.1.529.2.86.1.14, C29614T, S:S680F, Thailand/Japan，from #2424
JN.15	Alias of B.1.1.529.2.86.1.15, C24319T, Japan
JN.16	Alias of B.1.1.529.2.86.1.16, ORF3a:T229I, Japan
JN.17	Alias of B.1.1.529.2.86.1.17, C12781T, Japan
JN.18	Alias of B.1.1.529.2.86.1.18, T11614C
JN.19	Alias of B.1.1.529.2.86.1.19, A14601G, Japan
BA.2.86.2	Alias of B.1.1.529.2.86.2, ORF7a:E22D, South Africa/Botswana，from sars-cov-2-variants/lineage-proposals/issues/756
BA.2.86.3	Alias of B.1.1.529.2.86.3, C222T, C1960T, T12775C, South Africa
JQ.1	Alias of B.1.1.529.2.86.3.1, S:T95I, Denmark/France/South Africa, from sars-cov-2-variants/lineage-proposals#906
JQ.2	Alias of B.1.1.529.2.86.3.2, S:R346T, G2944A, South Africa, from #2505
JQ.2.1	Alias of B.1.1.529.2.86.3.2.1, S:L455S, South Africa, from sars-cov-2-variants/lineage-proposals#1373
JQ.2.1.1	Alias of B.1.1.529.2.86.3.2.1.1, S:F456L (T22928C), South Africa, from sars-cov-2-variants/lineage-proposals#1089
JQ.2.1.2	Alias of B.1.1.529.2.86.3.2.1.2, S:T572I, ORF1b:Q813H, Southern Africa
BA.2.86.4	Alias of B.1.1.529.2.86.4, S:A222V, ORF1a:V3892A, from sars-cov-2-variants/lineage-proposals#1032
BA.2.86.5	Alias of B.1.1.529.2.86.5, S:I197V, C5575T, T6085C, T23278C
BA.2.86.6	Alias of B.1.1.529.2.86.6, C9226T
LV.1	Alias of B.1.1.529.2.86.6.1, ORF1b:D294N
LV.2	Alias of B.1.1.529.2.86.6.2, S:R346T, S:L455S, S:F456L, ORF1a:E148G, ORF1a:W630C, ORF1a:G1069R, ORF1a:G3546D, ORF1b:A520V
BA.2.86.7	Alias of B.1.1.529.2.86.7, ORF1b:Y1344H, T10819C, C28720T, South Africa
MP.1	Alias of B.1.1.529.2.86.7.1, S:N487D, Southern Africa
MP.1.1	Alias of B.1.1.529.2.86.7.1.1, S:R346T, S:A348P, Southern Africa
BA.2.87	Alias of B.1.1.529.2.87, C18744T, no C9866T
BA.2.87.1	Alias of B.1.1.529.2.87.1, saltation with 15+ spike AA mutations, South Africa, from #2484
BA.3	Alias of B.1.1.529.3, from #367
BA.3.1	Alias of B.1.1.529.3.1, mainly found in Poland, from #540
BA.4	Alias of B.1.1.529.4, from #517
BA.4.1	Alias of B.1.1.529.4.1, mainly found in South Africa, from #548
BA.4.1.1	Alias of B.1.1.529.4.1.1, mainly found in South Africa and Germany, from #667
BA.4.1.2	Alias of B.1.1.529.4.1.2, Austria lineage, from #614
BA.4.1.3	Alias of B.1.1.529.4.1.3, Israel lineage
BA.4.1.4	Alias of B.1.1.529.4.1.4, Israel lineage
BA.4.1.5	Alias of B.1.1.529.4.1.5, Israel lineage
BA.4.1.6	Alias of B.1.1.529.4.1.6, USA lineage
BA.4.1.7	Alias of B.1.1.529.4.1.7, Australia lineage
BA.4.1.8	Alias of B.1.1.529.4.1.8, mainly found in England, USA, South Africa and Mexico, from #800
BA.4.1.9	Alias of B.1.1.529.4.1.9, mainly found in Zambia, USA, England and Mexico, from #926
BA.4.1.10	Alias of B.1.1.529.4.1.10, mainly found in France, defined by S:N354D, S:R346T, from #1073
BA.4.1.11	Alias of B.1.1.529.4.1.11 found mainly in Denmark, from #1606
CS.1	Alias of B.1.1.529.4.1.10.1, Denmark, Netherlands, England, defined by S:K444R
BA.4.2	Alias of B.1.1.529.4.2, USA lineage
BA.4.3	Alias of B.1.1.529.4.3, Israel lineage
BA.4.4	Alias of B.1.1.529.4.4, USA lineage
BA.4.5	Alias of B.1.1.529.4.5, Australia lineage
BA.4.6	Alias of B.1.1.529.4.6, mainly found in USA, England and Denmark, from #741
BA.4.6.1	Alias of B.1.1.529.4.6.1, mainly found in UK, USA and Germany, from #900
BA.4.6.2	Alias of B.1.1.529.4.6.2, Dominican Republic, USA, defined by S:V445A, from #1198
BA.4.6.3	Alias of B.1.1.529.4.6.3, defined by S:444N, S:460K, S:144-, from #1195
BA.4.6.4	Alias of B.1.1.529.4.6.4, Oceania, defined by ORF7a:Q62H
BA.4.6.5	Alias of B.1.1.529.4.6.5, global, defined by ORF9b:N36S
DC.1	Alias of B.1.1.529.4.6.5.1, global, defined by S:N460S
BA.4.7	Alias of B.1.1.529.4.7, mainly found in England, South Africa and Scotland, from #777
BA.4.8	Alias of B.1.1.529.4.8, mainly South Africa and Eswatini, from #670
BA.5	Alias of B.1.1.529.5, from #517
BA.5.1	Alias of B.1.1.529.5.1, Portugal lineage
BA.5.1.1	Alias of B.1.1.529.5.1.1, USA lineage
BA.5.1.2	Alias of B.1.1.529.5.1.2, mainly found in Denmark, Portugal and Luxembourg, from #790
BA.5.1.3	Alias of B.1.1.529.5.1.3, mainly found in Germany Portugal and Spain, from #765
BA.5.1.4	Alias of B.1.1.529.5.1.4, mainly found in Denmark and England, from #801
BA.5.1.5	Alias of B.1.1.529.5.1.5, mainly found in UK, Denmark, and Belgium, from #835
BA.5.1.6	Alias of B.1.1.529.5.1.6, Mexico lineage
BA.5.1.7	Alias of B.1.1.529.5.1.7, Canada lineage
BA.5.1.8	Alias of B.1.1.529.5.1.8, Peru lineage
BA.5.1.9	Alias of B.1.1.529.5.1.9, mainly found in England, Luxembourg, Scotland and Ireland, from #786
BA.5.1.10	Alias of B.1.1.529.5.1.10, mainly found in USA, Italy and England, from #901
BK.1	Alias of B.1.1.529.5.1.10.1, mainly found in USA, and Canada, from #901
BA.5.1.11	Alias of B.1.1.529.5.1.11, mainly found in Denmark, from #908
BA.5.1.12	Alias of B.1.1.529.5.1.12, mainly found in Spain, from #902
BA.5.1.14	Alias of B.1.1.529.5.1.14, mainly found in Brazil
BA.5.1.15	Alias of B.1.1.529.5.1.15, Peru and Brazil lineage
DL.1	Alias of B.1.1.529.5.1.15.1, found mainly in Brazil and USA, from #1376
BA.5.1.16	Alias of B.1.1.529.5.1.16, Japan lineage
BA.5.1.17	Alias of B.1.1.529.5.1.17, France lineage
BA.5.1.18	Alias of B.1.1.529.5.1.18, mainly found in USA, from #930
BA.5.1.19	Alias of B.1.1.529.5.1.19, mainly found in Netherlands, Germany, USA, and England, from #999
BA.5.1.20	Alias of B.1.1.529.5.1.20, mainly found in USA and Belgium, from #1000
BA.5.1.21	Alias of B.1.1.529.5.1.21, mainly found in Gambia and Japan, from #958
BT.1	Alias of B.1.1.529.5.1.21.1, mainly found in Japan, from #958
BT.2	Alias of B.1.1.529.5.1.21.2, mainly found in Denmark, Germany and France, from #1192
BA.5.1.22	Alias of B.1.1.529.5.1.22, mainly found in Europe, defined by ORF1b:S1273L, from #1135
DH.1	Alias of B.1.1.529.5.1.22.1, found mainly in Denmark, from #1242
BA.5.1.23	Alias of B.1.1.529.5.1.23, mainly found in Spain, defined by ORF1a:S302F, from #1135
DE.1	Alias of B.1.1.529.5.1.23.1, S:A694V
DE.2	Alias of B.1.1.529.5.1.23.2, S:R346T, S:G181V, T4579A
BA.5.1.24	Alias of B.1.1.529.5.1.24, mainly found in Finland, defined by ORF1b:V1271L, from #1135
BA.5.1.25	Alias of B.1.1.529.5.1.25, mainly found in Mexico and Peru, defined by ORF7b:H42Y, from #1135
DJ.1	Alias of B.1.1.529.5.1.25.1, found mainly in Peru, from #1245
DJ.1.1	Alias of B.1.1.529.5.1.25.1.1, found in Peru, from #1245
DJ.1.1.1	Alias of B.1.1.529.5.1.25.1.1.1 found mainly in Peru and USA, from #1407
DJ.1.2	Alias of B.1.1.529.5.1.25.1.2, found mainly in Peru, from #1379
DJ.1.3	Alias of B.1.1.529.5.1.25.1.3 found mainly in Peru, Colombia and USA, from #1409
BA.5.1.26	Alias of B.1.1.529.5.1.26, mainly found in Czechia, defined by S:R346T, from #869
CU.1	Alias of B.1.1.529.5.1.26.1, Central/Eastern Europe, S:T95I, S:T547K
BA.5.1.27	Alias of B.1.1.529.5.1.27, mainly found in North America, defined by S:R346T
BA.5.1.28	Alias of B.1.1.529.5.1.28, mainly found in North America, defined by S:R346T (and A18480G)
BA.5.1.29	Alias of B.1.1.529.5.1.29, mainly found in Russia, Germany and Estonia, from #1060
CL.1	Alias of B.1.1.529.5.1.29.1, S:150E and S:460K, from #1187
CL.1.1	Alias of B.1.1.529.5.1.29.1.1, S:P1162L
CL.1.2	Alias of B.1.1.529.5.1.29.1.2, S:T883I
CL.1.3	Alias of B.1.1.529.5.1.29.1.3, S:S71F
BA.5.1.30	Alias of B.1.1.529.5.1.30, ORF6:D6G
BA.5.1.31	Alias of B.1.1.529.5.1.31, found mainly in France and Denmark, from #991
BA.5.1.32	Alias of B.1.1.529.5.1.32, found mainly in Germany and China, from #1488
BA.5.1.33	Alias of B.1.1.529.5.1.33, S:V1264L
EQ.1	Alias of B.1.1.529.5.1.33.1 S:Q14H, found mainly in Germany, France, Japan and Denmark, from #1522
BA.5.1.34	Alias of B.1.1.529.5.1.34, Denmark, S:P1162S
BA.5.1.35	Alias of B.1.1.529.5.1.35, ORF1a:I1525M
EB.1	Alias of B.1.1.529.5.1.35.1, USA, S:R346T
BA.5.1.36	Alias of B.1.1.529.5.1.36, USA, S:R346T, S:G261V
BA.5.1.37	Alias of B.1.1.529.5.1.37, S:R346T, S:Y248N
BA.5.1.38	Alias of B.1.1.529.5.1.38, Japan, ORF8:S103L, S:R346T
BA.5.2	Alias of B.1.1.529.5.2, mainly found in South Africa, England and USA, from #551
BA.5.2.1	Alias of B.1.1.529.5.2.1, mainly found in South Africa, England and USA, from #657
BF.1	Alias of B.1.1.529.5.2.1.1, mainly found in England, Denmark, Spain and Scotland, from #618
BF.1.1	Alias of B.1.1.529.5.2.1.1.1, USA lineage
BF.2	Alias of B.1.1.529.5.2.1.2, Denmark lineage
BF.3	Alias of B.1.1.529.5.2.1.3, India lineage
BF.3.1	Alias of B.1.1.529.5.2.1.3.1, mainly found India, Singapore, and USA, from #825
BF.4	Alias of B.1.1.529.5.2.1.4, mainly found in England, from #788
BF.5	Alias of B.1.1.529.5.2.1.5, Israel lineage
BF.5.1	Alias of B.1.1.529.5.2.1.5.1 found mainly in Japan and Israel, from #1475
BF.5.2	Alias of B.1.1.529.5.2.1.5.2 found mainly in Japan, from #1476
BF.5.3	Alias of B.1.1.529.5.2.1.5.3 found mainly in Japan, from #1526
BF.5.4	Alias of B.1.1.529.5.2.1.5.4 Japan, ORF1a:K3839R
BF.5.5	Alias of B.1.1.529.5.2.1.5.5 Europe, S:K147N
BF.6	Alias of B.1.1.529.5.2.1.6, mainly found in England and Scotland, from #821
BF.7	Alias of B.1.1.529.5.2.1.7, mainly found in Belgium, England and Denmark, from #827
BF.7.1	Alias of B.1.1.529.5.2.1.7.1, mainly found in Germany, S:G261V, from #1132
BF.7.2	Alias of B.1.1.529.5.2.1.7.2, Denmark, S:H1101Y and S:V486I, from #1216
BF.7.3	Alias of B.1.1.529.5.2.1.7.3, France/Czechia, S:K182E
BF.7.4	Alias of B.1.1.529.5.2.1.7.4, Europe, ORF8:H17Y
BF.7.4.1	Alias of B.1.1.529.5.2.1.7.4.1, found mainly in USA and Netherlands, from #1253
BF.7.4.2	Alias of B.1.1.529.5.2.1.7.4.2, Europe
BF.7.4.3	Alias of B.1.1.529.5.2.1.7.4.3, Japan, S:F157L, N:A90S, from #1743
BF.7.5	Alias of B.1.1.529.5.2.1.7.5, Europe, ORF1b:P1427L
BF.7.5.1	Alias of B.1.1.529.5.2.1.7.5.1, found mainly in Germany and Denmark, from #1317
BF.7.6	Alias of B.1.1.529.5.2.1.7.6, Europe, ORF3a:E239D
BF.7.7	Alias of B.1.1.529.5.2.1.7.7, Europe, S:D80G, from #1147
BF.7.8	Alias of B.1.1.529.5.2.1.7.8, Europe, S:T883I
BF.7.9	Alias of B.1.1.529.5.2.1.7.9, Europe, S:Q677H
BF.7.10	Alias of B.1.1.529.5.2.1.7.10, Europe, S:Q1201K
BF.7.11	Alias of B.1.1.529.5.2.1.7.11, Europe, S:D1260Y
BF.7.12	Alias of B.1.1.529.5.2.1.7.12, Europe, S:A942S
BF.7.13	Alias of B.1.1.529.5.2.1.7.13, Belgium, ORF1a:H388Y, ORF1a:H1160Y,
BF.7.13.1	Alias of B.1.1.529.5.2.1.7.13.1, Europe, S:T430I, S:P681Y
BF.7.13.2	Alias of B.1.1.529.5.2.1.7.13.2, Poland, S:A653V
BF.7.14	Alias of B.1.1.529.5.2.1.7.14, China, S:C1243F, from #1470
BF.7.14.1	Alias of B.1.1.529.5.2.1.7.14.1 found mainly in China and Japan, contains S:V83F branch, from #1580
BF.7.14.2	Alias of B.1.1.529.5.2.1.7.14.2 China, S:Q14H
BF.7.14.3	Alias of B.1.1.529.5.2.1.7.14.3 China, S:A626V, from #1573
BF.7.14.4	Alias of B.1.1.529.5.2.1.7.14.4 China, ORF1a:T1844I
BF.7.14.5	Alias of B.1.1.529.5.2.1.7.14.5 China, C20703T, from #1607
BF.7.14.6	Alias of B.1.1.529.5.2.1.7.14.6 China, C1973T
BF.7.14.7	Alias of B.1.1.529.5.2.1.7.14.7 found mainly in China, from #1672
BF.7.15	Alias of B.1.1.529.5.2.1.7.15, Japan, S:G257D & ORF1a:A1812V, from #1358
BF.7.16	Alias of B.1.1.529.5.2.1.7.16, ORF1a:A498V
BF.7.16.1	Alias of B.1.1.529.5.2.1.7.16.1, Canada, S:A688V
BF.7.17	Alias of B.1.1.529.5.2.1.7.17, Japan/Germany, S:A688V, S:G1167S
BF.7.18	Alias of B.1.1.529.5.2.1.7.18, South Korea, S:K97N
BF.7.19	Alias of B.1.1.529.5.2.1.7.19, ORF7a:R118S
BF.7.19.1	Alias of B.1.1.529.5.2.1.7.19.1, Japan, T7111C,C1915T,C16470T,A26219G on ORF8:T87I branch
BF.7.20	Alias of B.1.1.529.5.2.1.7.20, G15543T
BF.7.21	Alias of B.1.1.529.5.2.1.7.21, C28603T
BF.7.22	Alias of B.1.1.529.5.2.1.7.22, ORF8:V81I
BF.7.23	Alias of B.1.1.529.5.2.1.7.23, ORF1b:T239I
BF.7.24	Alias of B.1.1.529.5.2.1.7.24, T10939C
BF.7.26	Alias of B.1.1.529.5.2.1.7.26, G20679A
BF.7.27	Alias of B.1.1.529.5.2.1.7.27, C8752T, sibling of BF.7.14
BF.8	Alias of B.1.1.529.5.2.1.8, USA lineage
BF.9	Alias of B.1.1.529.5.2.1.9, Canada lineage
BF.10	Alias of B.1.1.529.5.2.1.10, USA lineage
BF.10.1	Alias of B.1.1.529.5.2.1.10.1, found mainly in USA and Mexico, from #1442
BF.11	Alias of B.1.1.529.5.2.1.11, mainly found in England, S:R346T, from #837
BF.11.1	Alias of B.1.1.529.5.2.1.11.1, England, S:S1252F
BF.11.2	Alias of B.1.1.529.5.2.1.11.2, Wales, S:K147N
BF.11.3	Alias of B.1.1.529.5.2.1.11.3, ORF1a:L122F
BF.11.4	Alias of B.1.1.529.5.2.1.11.4, England, S:S704L
BF.11.5	Alias of B.1.1.529.5.2.1.11.5, England, ORF8:I121L
BF.12	Alias of B.1.1.529.5.2.1.12, mainly found Austria, Brazil, and England, from #752
BF.13	Alias of B.1.1.529.5.2.1.13, mainly found in USA, from #883
BF.14	Alias of B.1.1.529.5.2.1.14, mainly found in Austria, from #843
BF.15	Alias of B.1.1.529.5.2.1.15, Sri Lanka lineage, from #893
BF.16	Alias of B.1.1.529.5.2.1.16, found in USA, from #942
BF.17	Alias of B.1.1.529.5.2.1.17, Australia lineage
BF.18	Alias of B.1.1.529.5.2.1.18, Australia lineage
BF.19	Alias of B.1.1.529.5.2.1.19, Greece lineage
BF.20	Alias of B.1.1.529.5.2.1.20, lineage in Kenya and other countries
BF.21	Alias of B.1.1.529.5.2.1.21, USA lineage
BF.22	Alias of B.1.1.529.5.2.1.22, mainly found in Japan, from #1010
BF.23	Alias of B.1.1.529.5.2.1.23, mainly found in Czechia, from #1036
BF.24	Alias of B.1.1.529.5.2.1.24, mainly found in Indonesia, defined by ORF1a:G683C on S:1020S branch
BF.25	Alias of B.1.1.529.5.2.1.25, USA lineage, defined by S:445A and C18657T
BF.26	Alias of B.1.1.529.5.2.1.26, North America lineage, defined by ORF1b:G376S, on C5284T branch, from #1142
BF.27	Alias of B.1.1.529.5.2.1.27, Singapore lineage, defined by ORF1a:A2784V, from #1140
BF.28	Alias of B.1.1.529.5.2.1.28, Singapore lineage, defined by ORF1a:Q44L, from #1141
BF.29	Alias of B.1.1.529.5.2.1.29, mainly found in Denmark and USA, from #1162
BF.30	Alias of B.1.1.529.5.2.1.30, South Africa/England, defined by S:R346T after C25916T, C14599T
BF.31	Alias of B.1.1.529.5.2.1.31, Chile, 23758T
BF.31.1	Alias of B.1.1.529.5.2.1.31.1, Chile, S:A701V and S:S247N/S:Y248-
BF.32	Alias of B.1.1.529.5.2.1.32, found mainly in USA, on C5284T branch, from #1250
BF.33	Alias of B.1.1.529.5.2.1.33, Brazil/France, S:R346I, S:N460K
BF.34	Alias of B.1.1.529.5.2.1.34, found mainly in UK and Canada, from #1233
BF.35	Alias of B.1.1.529.5.2.1.35, Japan/Malaysia, S:N450D, ORF1a:L730R
BF.36	Alias of B.1.1.529.5.2.1.36, ORF1a:S166G,ORF1b:S1273L,ORF1b:A1428V
BF.37	Alias of B.1.1.529.5.2.1.37, Japan, ORF1a:S944L, S:G446D, on C5284T branch
BF.38	Alias of B.1.1.529.5.2.1.38, Japan, C17304T
BF.38.1	Alias of B.1.1.529.5.2.1.38.1, Japan, S:Q1201K
BF.38.2	Alias of B.1.1.529.5.2.1.38.2, Japan, S:V445A
BF.38.3	Alias of B.1.1.529.5.2.1.38.3, Japan, S:P1162S
BF.39	Alias of B.1.1.529.5.2.1.39, S:G181V
BF.39.1	Alias of B.1.1.529.5.2.1.39.1, Chile/Peru, S:V445A, S:N450D
BF.40	Alias of B.1.1.529.5.2.1.40, S:V445A, on C5284T branch
BF.41	Alias of B.1.1.529.5.2.1.41, Brazil, ORF7b:A43V
BF.41.1	Alias of B.1.1.529.5.2.1.41.1, Brazil, S:R346T
BF.42	Alias of B.1.1.529.5.2.1.42, found in Japan, from #1855
BA.5.2.2	Alias of B.1.1.529.5.2.2, France and Martinique lineage
BA.5.2.3	Alias of B.1.1.529.5.2.3, UK lineage
BZ.1	Alias of B.1.1.529.5.2.3.1, Denmark lineage, defined by S:Q677H
BZ.2	Alias of B.1.1.529.5.2.3.2, S:N450D, ORF1a:H2794Y
BA.5.2.4	Alias of B.1.1.529.5.2.4, Australia lineage
BA.5.2.5	Alias of B.1.1.529.5.2.5, Indonesia lineage
BA.5.2.6	Alias of B.1.1.529.5.2.6, global lineage, S:R346T, from #870
CP.1	Alias of B.1.1.529.5.2.6.1, global lineage, 27360C
CP.1.1	Alias of B.1.1.529.5.2.6.1.1, Portugal, France, Denmark, UK lineage, S:V445A
CP.1.2	Alias of B.1.1.529.5.2.6.1.2, England, S:K150N
CP.1.3	Alias of B.1.1.529.5.2.6.1.3, England, S:G446S
CP.2	Alias of B.1.1.529.5.2.6.2, Bangladesh, S:N334K
CP.3	Alias of B.1.1.529.5.2.6.3, Turkey, S:N460Y
CP.4	Alias of B.1.1.529.5.2.6.4, Turkey, S:I770V
CP.5	Alias of B.1.1.529.5.2.6.5, South Africa, S:C1247F
CP.6	Alias of B.1.1.529.5.2.6.6, S:V1264L
CP.7	Alias of B.1.1.529.5.2.6.7 found mainly in Japan, from #1473
CP.8	Alias of B.1.1.529.5.2.6.8 ORF1b:D1939G, C15240T, A15486G, C28651T, from #1627
CP.8.1	Alias of B.1.1.529.5.2.6.8.1 found mainly in the Australia and Japan, from #1627
BA.5.2.7	Alias of B.1.1.529.5.2.7, global lineage, from #924
CY.1	Alias of B.1.1.529.5.2.7.1, found mainly in Belgium, Netherlands and Luxembourg, from #1247
CY.2	Alias of B.1.1.529.5.2.7.2 found in Japan, from #1474
BA.5.2.8	Alias of B.1.1.529.5.2.8, Israel lineage
BA.5.2.9	Alias of B.1.1.529.5.2.9, USA lineage
BA.5.2.10	Alias of B.1.1.529.5.2.10, Brazil lineage
BA.5.2.11	Alias of B.1.1.529.5.2.11, Philippines lineage
BA.5.2.12	Alias of B.1.1.529.5.2.12, Japan lineage
BA.5.2.13	Alias of B.1.1.529.5.2.13, mainly found in England, from #959
BA.5.2.14	Alias of B.1.1.529.5.2.14, mainly found in Denmark, Canada and Pakistan, from #1002
BA.5.2.16	Alias of B.1.1.529.5.2.16, Indonesia lineage, defined by ORF1a:A3697V, indirectly, from #1065
BU.1	Alias of B.1.1.529.5.2.16.1, defined by S:444M and S:460K, from #1065
BU.2	Alias of B.1.1.529.5.2.16.2, USA lineage, S:V445A
BU.3	Alias of B.1.1.529.5.2.16.3, Guatemala, S:K147N, S:N450D
BA.5.2.18	Alias of B.1.1.529.5.2.18, mainly Scandinavia, defined by S:K444R on ORF1b:1050N branch, from #1025
CR.1	Alias of B.1.1.529.5.2.18.1, global, S:R346T
CR.1.1	Alias of B.1.1.529.5.2.18.1.1, S:V62I
CR.1.2	Alias of B.1.1.529.5.2.18.1.2, Canada/Israel, S:V445A
CR.1.3	Alias of B.1.1.529.5.2.18.1.3, found mainly in Denmark and Japan, from #1355
CR.2	Alias of B.1.1.529.5.2.18.2, England, S:Y145H
BA.5.2.19	Alias of B.1.1.529.5.2.19, mainly Scandinavia, defined by ORF3a:T14I on ORF1b:1050N branch, from #916
BA.5.2.20	Alias of B.1.1.529.5.2.20, mainly Indonesia, defined by C23707T on ORF1b:1050N branch to reduce unspecified BA.5.2
BV.1	Alias of B.1.1.529.5.2.20.1, mainly found in Denmark, formerly BA.5.2.17, from #1019
BV.2	Alias of B.1.1.529.5.2.20.2, defined by S:K444N, from #1122
BA.5.2.21	Alias of B.1.1.529.5.2.21, mainly Indonesia, defined by C5284T on ORF1b:1050N branch to reduce unspecified BA.5.2
CN.1	Alias of B.1.1.529.5.2.21.1, S:N450D, from #1108
CN.2	Alias of B.1.1.529.5.2.21.2, S:R346T, S:Y28H, USA/Canada, from #1404
BA.5.2.22	Alias of B.1.1.529.5.2.22, mainly found in USA, Canada and Germany, from #945
BA.5.2.23	Alias of B.1.1.529.5.2.23, S:S255F, S:V445A, A4576T, T4579A, mainly found in USA, from #1090
BA.5.2.24	Alias of B.1.1.529.5.2.24, defined by S:K444N on ORF1b:1050N branch
CK.1	Alias of B.1.1.529.5.2.24.1, Pakistan, defined by S:N460K, from #1120
CK.1.1	Alias of B.1.1.529.5.2.24.1.1, found mainly in Japan, from #1452
CK.1.1.1	Alias of B.1.1.529.5.2.24.1.1.1, S:E654K, G6742T, C8782T, Japan
CK.1.1.2	Alias of B.1.1.529.5.2.24.1.1.2, S:V1264L, Japan, from #2271
CK.1.2	Alias of B.1.1.529.5.2.24.1.2, Pakistan, S:G181V, S:R346T, from #1467
CK.1.3	Alias of B.1.1.529.5.2.24.1.3, Mexico, S:F157L, S:G181V
CK.1.4	Alias of B.1.1.529.5.2.24.1.4, C10228T, C25824T, C27741T, on C25614T branch
CK.1.5	Alias of B.1.1.529.5.2.24.1.5, C9118T, C15951T, ORF1a:M3733V, on C25614T branch
CK.2	Alias of B.1.1.529.5.2.24.2, Pakistan, defined by E:V62F, from #1190
CK.2.1	Alias of B.1.1.529.5.2.24.2.1, Pakistan, defined by S:N460K, from #1125
CK.2.1.1	Alias of B.1.1.529.5.2.24.2.1.1, defined by S:S255F, from #1190
CK.3	Alias of B.1.1.529.5.2.24.3, found mainly in Singapore and USA, from #1121
DG.1	Alias of B.1.1.529.5.2.24.2.1.1.1, defined by S:G252S, from #1288
BA.5.2.25	Alias of B.1.1.529.5.2.25, mainly found in France, USA and Canada, from #1111
DB.1	Alias of B.1.1.529.5.2.25.1, France/Netherlands/Spain, S:R346T, S:N460K, from #1258
DB.2	Alias of B.1.1.529.5.2.25.2, BeNeLux, S:A262S
DB.3	Alias of B.1.1.529.5.2.25.3 found mainly in Europe, from #1613
BA.5.2.26	Alias of B.1.1.529.5.2.26, most common in Thailand, defined by ORF3a:L108V, from #1133
BA.5.2.27	Alias of B.1.1.529.5.2.27, most common in Vietnam, defined by ORF1a:I2332V, from #1133
CF.1	Alias of B.1.1.529.5.2.27.1, USA and Mexico lineage, defined by S:K97T, originally designated as BA.5.2.15, from #1054
CG.1	Alias of B.1.1.529.5.2.26.1, mainly found in Germany, Poland and Denmark, from #1126
BA.5.2.28	Alias of B.1.1.529.5.2.28, most common in Malaysia, defined by ORF1a:T1437I, from #1133
BA.5.2.29	Alias of B.1.1.529.5.2.29, mainly found in Denmark, from #1050
BA.5.2.30	Alias of B.1.1.529.5.2.30, Europe lineage, defined by S:G446D
BA.5.2.31	Alias of B.1.1.529.5.2.31, USA lineage, defined by S:L84I
CD.1	Alias of B.1.1.529.5.2.31.1, USA lineage, defined by S:G446D, S:A688T
CD.2	Alias of B.1.1.529.5.2.31.2, USA lineage, defined by S:A435S
BA.5.2.32	Alias of B.1.1.529.5.2.32, Russia lineage, defined by S:N450D after ORF8:T87I
BA.5.2.33	Alias of B.1.1.529.5.2.33, UK lineage, defined by ORF8:P93S
CE.1	Alias of B.1.1.529.5.2.33.1, UK lineage, defined by S:R346I
BA.5.2.34	Alias of B.1.1.529.5.2.34, mainly found in Israel and USA, from #992
BA.5.2.35	Alias of B.1.1.529.5.2.35, Pakistan lineage, defined by S:R346T after G28423C and C7006T
BA.5.2.36	Alias of B.1.1.529.5.2.36, India/Pakistan lineage, defined by S:K444T, from #1203
CT.1	Alias of B.1.1.529.5.2.36.1, India/Pakistan lineage, defined by S:K356T, from #1203
BA.5.2.37	Alias of B.1.1.529.5.2.37, found mainly in USA and India, from #1117
BA.5.2.38	Alias of B.1.1.529.5.2.38, S:T430I, from #1254
DA.1	Alias of B.1.1.529.5.2.38.1, Indonesia, S:R346T, from #1254
BA.5.2.39	Alias of B.1.1.529.5.2.39, USA, S:R346T, from #1279
BA.5.2.40	Alias of B.1.1.529.5.2.40, Sweden, S:N450D
BA.5.2.41	Alias of B.1.1.529.5.2.41, found mainly in Sweden, from #1328
BA.5.2.42	Alias of B.1.1.529.5.2.42, found mainly in Australia, from #1266
BA.5.2.43	Alias of B.1.1.529.5.2.43, found mainly in SouthKorea, from #1312
BA.5.2.44	Alias of B.1.1.529.5.2.44, Indonesia/Malaysia/SouthKorea/global, ORF1a:L2564F
BA.5.2.45	Alias of B.1.1.529.5.2.45, found mainly in Australia, from #1383
BA.5.2.46	Alias of B.1.1.529.5.2.46 found mainly in Japan, from #1446
BA.5.2.47	Alias of B.1.1.529.5.2.47 found mainly in Indonesia, Australia, and USA, from #1496
DQ.1	Alias of B.1.1.529.5.2.47.1 found mainly in Indonesia, Germany, and USA, from #1496
BA.5.2.48	Alias of B.1.1.529.5.2.48, China, C2710T, C8626T, T17208C, from #1471
DY.1	Alias of B.1.1.529.5.2.48.1, China, S:A570S, from #1479
DY.1.1	Alias of B.1.1.529.5.2.48.1.1 found mainly in China, from #1599
DY.2	Alias of B.1.1.529.5.2.48.2, China, N:Q241K, from #1478
DY.3	Alias of B.1.1.529.5.2.48.3, China, ORF1a:T1788M, from #1472
DY.4	Alias of B.1.1.529.5.2.48.4, China, ORF1b:T2432I
BA.5.2.49	Alias of B.1.1.529.5.2.49, China, S:T883I, A14673G, T16456C, from #1480
DZ.1	Alias of B.1.1.529.5.2.49.1, China, S:D1146Y
DZ.2	Alias of B.1.1.529.5.2.49.2, China, S:G75V
BA.5.2.50	Alias of B.1.1.529.5.2.50 China, ORF1a:S2488F after ORF1b:P1727L, from #1542
BA.5.2.51	Alias of B.1.1.529.5.2.51 Russia/Estonia, S:K444R after ORF1b:P1727L
BA.5.2.52	Alias of B.1.1.529.5.2.52 S:N450D after ORF1a:D2060N
BA.5.2.53	Alias of B.1.1.529.5.2.53 USA, S:A653V after T17928C
BA.5.2.54	Alias of B.1.1.529.5.2.54 Guatemala, S:N450D after C11020T
BA.5.2.55	Alias of B.1.1.529.5.2.55 Japan, C5548A
BA.5.2.56	Alias of B.1.1.529.5.2.56 UK, S:K444M
BA.5.2.57	Alias of B.1.1.529.5.2.57 S:R346S
BA.5.2.58	Alias of B.1.1.529.5.2.58 S:R346S after C9565T, C11479T, C12085T
BA.5.2.59	Alias of B.1.1.529.5.2.59 USA, S:V1264L
BA.5.2.60	Alias of B.1.1.529.5.2.60 Europe, S:N450D, ORF1a:K3832R after ORF1b:P1727L
BA.5.2.61	Alias of B.1.1.529.5.2.61 S:N450D, ORF1b:Q2070L
BA.5.2.62	Alias of B.1.1.529.5.2.62 S:A653V on BA.5.2 polytomy
BA.5.2.63	Alias of B.1.1.529.5.2.63 found mainly in Canada, from #1636
BA.5.3	Alias of B.1.1.529.5.3, mainly found in Germany and South Africa, from #550
BA.5.3.1	Alias of B.1.1.529.5.3.1, mainly found in South Africa, Austria, and England, from #625
BE.1	Alias of B.1.1.529.5.3.1.1, mainly found in South Africa, Austria and England, from #625
BE.1.1	Alias of B.1.1.529.5.3.1.1.1, Germany lineage
BE.1.1.1	Alias of B.1.1.529.5.3.1.1.1.1, found globally, from #931
BQ.1	Alias of B.1.1.529.5.3.1.1.1.1.1, Nigeria lineage, from #993
BQ.1.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1, found globally, defining mutations ORF1b:N1191S and S:R346T, from #993
BQ.1.1.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.1, Europe, ORF1b:V1639A
CZ.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.1.1, England/SouthKorea/Romania, S:F490I
CZ.2	Alias of B.1.1.529.5.3.1.1.1.1.1.1.1.2, S:A688V
BQ.1.1.2	Alias of B.1.1.529.5.3.1.1.1.1.1.1.2, England, S:D253G, from #1209
DU.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.2.1 found mainly in UK, from #1540
BQ.1.1.3	Alias of B.1.1.529.5.3.1.1.1.1.1.1.3, England, A15111G
DR.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.3.1, S:M153I, found mainly in USA, from #1420
DR.2	Alias of B.1.1.529.5.3.1.1.1.1.1.1.3.2, S:478R, USA
BQ.1.1.4	Alias of B.1.1.529.5.3.1.1.1.1.1.1.4, T29173C
EE.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.1, USA, N:T366I
EE.2	Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.2, ORF1b:V1538I
EE.3	Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.3, Canada/USA, C22498T
EE.4	Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.4, Europe, S:Q52H
EE.5	Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.5, USA, S:N185Y
BQ.1.1.5	Alias of B.1.1.529.5.3.1.1.1.1.1.1.5, ORF1b:P2313L, ORF1a:V3855I
DN.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1, S:K147N
DN.1.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1 found mainly in UK and Denmark, from #1463
DN.1.1.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1.1 UK, S:Y453F, from #1548
DN.1.1.2	Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1.2 UK, S:P479L
DN.1.1.3	Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1.3 S:S704L, UK
DN.1.1.4	Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1.4 S:N481S, UK
DN.2	Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.2, ORF1b:D2351N, USA
DN.3	Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.3, ORF1a:V1025L
DN.3.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.3.1, S:K182E
BQ.1.1.6	Alias of B.1.1.529.5.3.1.1.1.1.1.1.6, ORF1a:L681F
BQ.1.1.7	Alias of B.1.1.529.5.3.1.1.1.1.1.1.7, ORF1a:S216Y
DK.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.7.1, S:339N, ORF1a:A1809T
BQ.1.1.8	Alias of B.1.1.529.5.3.1.1.1.1.1.1.8, ORF1a:H374Y, ORF1a:L969F
DP.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.8.1, S:A352S, England/Belgium
BQ.1.1.9	Alias of B.1.1.529.5.3.1.1.1.1.1.1.9, S:S151I
BQ.1.1.10	Alias of B.1.1.529.5.3.1.1.1.1.1.1.10, S:Y144-, T16413C, Denmark/Germany
FA.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.10.1, S:K478R, USA
FA.2	Alias of B.1.1.529.5.3.1.1.1.1.1.1.10.2, S:T323I, Denmark
BQ.1.1.11	Alias of B.1.1.529.5.3.1.1.1.1.1.1.11, S:S494P
BQ.1.1.12	Alias of B.1.1.529.5.3.1.1.1.1.1.1.12, France/USA, S:S494P, on ORF1a:T4368I branch
BQ.1.1.13	Alias of B.1.1.529.5.3.1.1.1.1.1.1.13, Denmark/Israel/Switzerland/France, E:V62F and S:Y144-
EF.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1, C6040T
EF.1.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.1, C23086T,T7783C
EF.1.1.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.1.1, Brazil, S:F157L
EY.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.1.1.1, Brazil/USA, S:Q613H
EF.1.2	Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.2, Spain, T15492C
EF.1.3	Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.3, N:T166I
EF.2	Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.2, UK, ORF1b:V119I
EF.3	Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.2, Japan, S:S704T
BQ.1.1.14	Alias of B.1.1.529.5.3.1.1.1.1.1.1.14, England, G23608T
CW.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.14.1, England, S:G446S
BQ.1.1.15	Alias of B.1.1.529.5.3.1.1.1.1.1.1.15, Spain, T18897C
DM.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.15.1, Spain/Europe/USA, S:A348S
BQ.1.1.16	Alias of B.1.1.529.5.3.1.1.1.1.1.1.16, England, S:Q607H
BQ.1.1.17	Alias of B.1.1.529.5.3.1.1.1.1.1.1.17, France, ORF1a:S2273F
BQ.1.1.18	Alias of B.1.1.529.5.3.1.1.1.1.1.1.18, France, C6541T
ED.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.18.1, Japan, ORF3a:L108F, ORF1a:C433S
ED.2	Alias of B.1.1.529.5.3.1.1.1.1.1.1.18.2, USA, ORF1a:D928Y
ED.3	Alias of B.1.1.529.5.3.1.1.1.1.1.1.18.3, USA, S:D843N
BQ.1.1.19	Alias of B.1.1.529.5.3.1.1.1.1.1.1.19, England, N:Q380H
BQ.1.1.20	Alias of B.1.1.529.5.3.1.1.1.1.1.1.20, Denmark, S:144- and ORF3a:H204Y
BQ.1.1.21	Alias of B.1.1.529.5.3.1.1.1.1.1.1.21, Switzerland/France, S:144- and A17946G
BQ.1.1.22	Alias of B.1.1.529.5.3.1.1.1.1.1.1.22, Australia/England/Denmark, S:144- and C913A
ER.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.22.1 found mainly in UK, from #1492
ER.1.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.22.1.1 found mainly in UK, from #1715
BQ.1.1.23	Alias of B.1.1.529.5.3.1.1.1.1.1.1.23, France, ORF3a:V97I, S:Y144-, on G6421T branch
BQ.1.1.24	Alias of B.1.1.529.5.3.1.1.1.1.1.1.24, England, 11941T, S:Y144-
BQ.1.1.25	Alias of B.1.1.529.5.3.1.1.1.1.1.1.25, USA/Canada, S:F490S and S:Y144-, from #1350
BQ.1.1.26	Alias of B.1.1.529.5.3.1.1.1.1.1.1.26, S:E471Q
BQ.1.1.27	Alias of B.1.1.529.5.3.1.1.1.1.1.1.27, France/USA, S:G181R, ORF1a:F2864L, on G6421T branch
BQ.1.1.28	Alias of B.1.1.529.5.3.1.1.1.1.1.1.28, S:P251L, ORF1b:P976S, on C18828T branch
EH.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.28.1, Europe, S:S247N, S:Y248S, from #1648
BQ.1.1.29	Alias of B.1.1.529.5.3.1.1.1.1.1.1.29, S:Q613H
BQ.1.1.30	Alias of B.1.1.529.5.3.1.1.1.1.1.1.30, Canada, S:V445A
BQ.1.1.31	Alias of B.1.1.529.5.3.1.1.1.1.1.1.31, Indonesia/global, S:S256L
BQ.1.1.32	Alias of B.1.1.529.5.3.1.1.1.1.1.1.32 found mainly in USA, S:153I, S:144-, from #1402
DT.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.32.1 England, S:F494P, from #1484
DT.2	Alias of B.1.1.529.5.3.1.1.1.1.1.1.32.2 found mainly in USA, from #1612
DT.3	Alias of B.1.1.529.5.3.1.1.1.1.1.1.32.3 USA, S:L176F
BQ.1.1.34	Alias of B.1.1.529.5.3.1.1.1.1.1.1.34, England, S:144-, S:494P, from #1483
BQ.1.1.35	Alias of B.1.1.529.5.3.1.1.1.1.1.1.35, Canada, S:K147E, ORF1a:A1812T
ET.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.35.1 found mainly in UK and Belgium, from #1732
BQ.1.1.36	Alias of B.1.1.529.5.3.1.1.1.1.1.1.36, Brazil, S:T883I
BQ.1.1.37	Alias of B.1.1.529.5.3.1.1.1.1.1.1.37 Italy, ins_S:247:SAE, S:Y248D, from #1571
BQ.1.1.38	Alias of B.1.1.529.5.3.1.1.1.1.1.1.38 found mainly in South Africa and USA, from #1419
EW.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.1 South Africa/Germany, S:478R, T4579A, from #1786
EW.2	Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.2 S:A701V
EW.3	Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.3 S:A348S, South Africa
BQ.1.1.39	Alias of B.1.1.529.5.3.1.1.1.1.1.1.39 found mainly in England, Singapore and Canada, from #1385
FQ.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.39.1, found mainly in Sweden, France and Australia, from #1797
BQ.1.1.40	Alias of B.1.1.529.5.3.1.1.1.1.1.1.40 Canada, defined by N:T24I
BQ.1.1.41	Alias of B.1.1.529.5.3.1.1.1.1.1.1.41 USA, defined by S:K182I, from #1291
BQ.1.1.42	Alias of B.1.1.529.5.3.1.1.1.1.1.1.42 France, defined by S:S704L
BQ.1.1.43	Alias of B.1.1.529.5.3.1.1.1.1.1.1.43 USA, S:Q613H (G23401C), C26292T
EZ.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.43.1 Portugal, S:S247N, S:Y248S, from #1673
BQ.1.1.44	Alias of B.1.1.529.5.3.1.1.1.1.1.1.44 S:D253G
BQ.1.1.45	Alias of B.1.1.529.5.3.1.1.1.1.1.1.45 Europe, S:Y248D, from #1512
BQ.1.1.46	Alias of B.1.1.529.5.3.1.1.1.1.1.1.46 France, S:F157L
EN.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.46.1 France, S:V1264L, from #1696
EN.1.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.46.1.1 S:M153I, France
BQ.1.1.47	Alias of B.1.1.529.5.3.1.1.1.1.1.1.47 S:K147I
BQ.1.1.48	Alias of B.1.1.529.5.3.1.1.1.1.1.1.48 S:H245N
BQ.1.1.49	Alias of B.1.1.529.5.3.1.1.1.1.1.1.49 S:H1083D
BQ.1.1.50	Alias of B.1.1.529.5.3.1.1.1.1.1.1.50 found mainly in Peru, from #1577
BQ.1.1.51	Alias of B.1.1.529.5.3.1.1.1.1.1.1.51 USA, ORF3a:L101F
BQ.1.1.52	Alias of B.1.1.529.5.3.1.1.1.1.1.1.52 USA/Mexico, C7006T
EA.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.52.1 ORF8:C102F/ins_S:247:SKWL, from #1635
EA.2	Alias of B.1.1.529.5.3.1.1.1.1.1.1.52.2 S:T470I
BQ.1.1.53	Alias of B.1.1.529.5.3.1.1.1.1.1.1.53 S:N185D
FM.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.53.1 S:613H, England
FM.2	Alias of B.1.1.529.5.3.1.1.1.1.1.1.53.2 S:946R, Germany
BQ.1.1.54	Alias of B.1.1.529.5.3.1.1.1.1.1.1.54 USA, S:F186S, N:A211T
BQ.1.1.55	Alias of B.1.1.529.5.3.1.1.1.1.1.1.55 USA, S:K1149R
BQ.1.1.56	Alias of B.1.1.529.5.3.1.1.1.1.1.1.56 S:H1101Y
BQ.1.1.57	Alias of B.1.1.529.5.3.1.1.1.1.1.1.57 S:S256A
BQ.1.1.58	Alias of B.1.1.529.5.3.1.1.1.1.1.1.58 USA/England, S:I934V
BQ.1.1.59	Alias of B.1.1.529.5.3.1.1.1.1.1.1.59 France, S:T732I
BQ.1.1.60	Alias of B.1.1.529.5.3.1.1.1.1.1.1.60 Brazil, S:S691F, from #1426
BQ.1.1.61	Alias of B.1.1.529.5.3.1.1.1.1.1.1.61 USA, S:P621H
BQ.1.1.62	Alias of B.1.1.529.5.3.1.1.1.1.1.1.62 France, S:P621S
BQ.1.1.63	Alias of B.1.1.529.5.3.1.1.1.1.1.1.63 USA, S:Y248H
BQ.1.1.64	Alias of B.1.1.529.5.3.1.1.1.1.1.1.64 South Africa, S:F186S
BQ.1.1.65	Alias of B.1.1.529.5.3.1.1.1.1.1.1.65 Mexico, S:K147I, N:T135I
ES.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.65.1 found mainly in Canada and USA, from #1722
BQ.1.1.66	Alias of B.1.1.529.5.3.1.1.1.1.1.1.66 England/France, S:K147N
BQ.1.1.67	Alias of B.1.1.529.5.3.1.1.1.1.1.1.67 S:L176F
BQ.1.1.68	Alias of B.1.1.529.5.3.1.1.1.1.1.1.68 USA, ORF1a:V1211I
BQ.1.1.69	Alias of B.1.1.529.5.3.1.1.1.1.1.1.69 ORF1b:S2027L
BQ.1.1.70	Alias of B.1.1.529.5.3.1.1.1.1.1.1.70 Japan, ORF1a:A903V, M:S212G, from #1445
BQ.1.1.71	Alias of B.1.1.529.5.3.1.1.1.1.1.1.71 found in England, from #1713
EV.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.71.1 S:Y248H, England
BQ.1.1.72	Alias of B.1.1.529.5.3.1.1.1.1.1.1.72 ORF1b:D100A
FC.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.72.1 S:478R, Indonesia
BQ.1.1.73	Alias of B.1.1.529.5.3.1.1.1.1.1.1.73, found mainly in Canada and Spain, from #1740
BQ.1.1.74	Alias of B.1.1.529.5.3.1.1.1.1.1.1.74, S:182E, found mainly in Botswana and UK, from #1817
FN.1	Alias of B.1.1.529.5.3.1.1.1.1.1.1.74.1, S:478R, Botswana/England, from #1817
BQ.1.1.75	Alias of B.1.1.529.5.3.1.1.1.1.1.1.75, S:K182N, S:F456L (T22928C), Reunion
BQ.1.1.76	Alias of B.1.1.529.5.3.1.1.1.1.1.1.76, C15180T, Slovenia/Austria
BQ.1.1.77	Alias of B.1.1.529.5.3.1.1.1.1.1.1.77, C12853T, ORF1b:A1428V, USA/France
BQ.1.1.78	Alias of B.1.1.529.5.3.1.1.1.1.1.1.78, ORF1a:M315I, ORF1b:P1953L, Japan
BQ.1.1.79	Alias of B.1.1.529.5.3.1.1.1.1.1.1.79, S:Q613H, C1594T, C16362T, T24079C, Greece
BQ.1.2	Alias of B.1.1.529.5.3.1.1.1.1.1.2, found globally, defined by S:I666V, from #1082
BQ.1.2.1	Alias of B.1.1.529.5.3.1.1.1.1.1.2.1, found mainly in Japan, SouthKorea and Mongolia, from #1392
FB.1	Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.1 S:D253G, Singapore/Taiwan/Japan, from #1714
FB.2	Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.2 S:478R, USA/South Korea/Mongolia
BQ.1.2.2	Alias of B.1.1.529.5.3.1.1.1.1.1.2.2, S:K147E, S:R346T, S:V445A, West Africa, from #1861
JH.1	Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.1, S:K182E, S:486A, S:S494P, S:E554K, from #2068
JH.2	Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068, from #2068, from #2068, from #2068, from #2068, from #2068, from #2068
BQ.1.2.3	Alias of B.1.1.529.5.3.1.1.1.1.1.2.3, E:V24L, Canada
BQ.1.3	Alias of B.1.1.529.5.3.1.1.1.1.1.3, found globally, defined by S:E619Q, from #1082
BQ.1.3.1	Alias of B.1.1.529.5.3.1.1.1.1.1.3.1, C2509T, Spain
BQ.1.3.2	Alias of B.1.1.529.5.3.1.1.1.1.1.3.2, ORF1a:L1853F, USA
BQ.1.4	Alias of B.1.1.529.5.3.1.1.1.1.1.4, England and Denmark, defined by S:R190T
BQ.1.5	Alias of B.1.1.529.5.3.1.1.1.1.1.5, defined by ORF1b:T1076I
BQ.1.6	Alias of B.1.1.529.5.3.1.1.1.1.1.6, USA lineage, defined by ORF1a:G94C
BQ.1.7	Alias of B.1.1.529.5.3.1.1.1.1.1.7, defined by S:L54F
BQ.1.8	Alias of B.1.1.529.5.3.1.1.1.1.1.8, defined by ORF1a:S505F and S:Y144-, from #1202
BQ.1.8.1	Alias of B.1.1.529.5.3.1.1.1.1.1.8.1, England/Australia, S:256L
BQ.1.8.2	Alias of B.1.1.529.5.3.1.1.1.1.1.8.2, England/Scotland, S:A688V
FF.1	Alias of B.1.1.529.5.3.1.1.1.1.1.8.2.1 found mainly in the UK, from #1523
BQ.1.9	Alias of B.1.1.529.5.3.1.1.1.1.1.9, USA lineage, defined by ORF1a:V2604I followed by S:346T (independent from BQ.1.1)
BQ.1.10	Alias of B.1.1.529.5.3.1.1.1.1.1.10, international lineage, 27600T
BQ.1.10.1	Alias of B.1.1.529.5.3.1.1.1.1.1.10.1, Italy/England/Denmark, S:H146L, from #1189
EC.1	Alias of B.1.1.529.5.3.1.1.1.1.1.10.1.1, England, S:Q613H
EC.1.1	Alias of B.1.1.529.5.3.1.1.1.1.1.10.1.1.1, England, S:V445A
BQ.1.10.2	Alias of B.1.1.529.5.3.1.1.1.1.1.10.2, S:T523N
BQ.1.10.3	Alias of B.1.1.529.5.3.1.1.1.1.1.10.3, S:K147E
BQ.1.11	Alias of B.1.1.529.5.3.1.1.1.1.1.11, international lineage, 29541T
BQ.1.11.1	Alias of B.1.1.529.5.3.1.1.1.1.1.11.1 found mainly in USA and Peru, from #1581
BQ.1.12	Alias of B.1.1.529.5.3.1.1.1.1.1.12, international lineage, 28849T
BQ.1.13	Alias of B.1.1.529.5.3.1.1.1.1.1.13, international lineage, ORF1a:V627I
BQ.1.13.1	Alias of B.1.1.529.5.3.1.1.1.1.1.13.1 found mainly in USA and Europe, from #1400
BQ.1.14	Alias of B.1.1.529.5.3.1.1.1.1.1.14, international lineage, 18570A
BQ.1.15	Alias of B.1.1.529.5.3.1.1.1.1.1.15, international lineage, ORF1a:L3116F
BQ.1.15.1	Alias of B.1.1.529.5.3.1.1.1.1.1.15.1, Canada, ins_S:247:SKWL, C17745T
BQ.1.15.2	Alias of B.1.1.529.5.3.1.1.1.1.1.15.2, Canada, ins_S:247:SKWL, C6286T
BQ.1.16	Alias of B.1.1.529.5.3.1.1.1.1.1.16, international lineage, ORF1a:A540V
BQ.1.17	Alias of B.1.1.529.5.3.1.1.1.1.1.17, Denmark/Germany, S:K444T mutated further to S:444M
BQ.1.18	Alias of B.1.1.529.5.3.1.1.1.1.1.18, Denmark/Austria, E:P71S, then S:R346T and S:Y144-
BQ.1.19	Alias of B.1.1.529.5.3.1.1.1.1.1.19, S:S494P
BQ.1.20	Alias of B.1.1.529.5.3.1.1.1.1.1.20, S:A348S
BQ.1.21	Alias of B.1.1.529.5.3.1.1.1.1.1.21, England/France, S:R346S, S:Y144-
BQ.1.22	Alias of B.1.1.529.5.3.1.1.1.1.1.22, Canada, S:R346T after C26681T
BQ.1.23	Alias of B.1.1.529.5.3.1.1.1.1.1.23, Singapore/Indonesia/Australia, A2653G and S:Y144-
BQ.1.24	Alias of B.1.1.529.5.3.1.1.1.1.1.24, South Africa, S:T240I, S:R346T, from #1240
BQ.1.25	Alias of B.1.1.529.5.3.1.1.1.1.1.25, S:R346T, T8038C, T25569C, G26031A
BQ.1.25.1	Alias of B.1.1.529.5.3.1.1.1.1.1.25.1, found mainly in USA, from #1451
BQ.1.26	Alias of B.1.1.529.5.3.1.1.1.1.1.26, found mainly in Denmark, from #1315
BQ.1.26.1	Alias of B.1.1.529.5.3.1.1.1.1.1.26.1, found mainly in Denmark, from #1369
BQ.1.26.2	Alias of B.1.1.529.5.3.1.1.1.1.1.26.2, Europe, S:F157L
BQ.1.27	Alias of B.1.1.529.5.3.1.1.1.1.1.27, USA/England, S:V445A
BQ.1.28	Alias of B.1.1.529.5.3.1.1.1.1.1.28, found mainly in USA, ins:S:247SWRM, from #1415
BQ.1.29	Alias of B.1.1.529.5.3.1.1.1.1.1.29, found mainly in USA, S:E554Q
BQ.1.30	Alias of B.1.1.529.5.3.1.1.1.1.1.30, Canada, S:V445A after T8038C, T25569C, G26031A
BQ.1.31	Alias of B.1.1.529.5.3.1.1.1.1.1.31, France, S:K147E
BQ.1.32	Alias of B.1.1.529.5.3.1.1.1.1.1.32 found mainly in USA and Mexico, from #1731
BQ.1.33	Alias of B.1.1.529.5.3.1.1.1.1.1.33 S:F157L, S:K147I
BQ.2	Alias of B.1.1.529.5.3.1.1.1.1.2, international, S:A522P
BE.1.2	Alias of B.1.1.529.5.3.1.1.2, mainly found in Costa Rica and USA, from #923
BE.1.1.2	Alias of B.1.1.529.5.3.1.1.1.2, Germany lineage, defined by ORF9b:S50L
CC.1	Alias of B.1.1.529.5.3.1.1.1.2.1, Germany lineage, defined by S:N450D
BE.1.2.1	Alias of B.1.1.529.5.3.1.1.2.1, Panama, Canada, USA, defined by S:V445A, from #1095
DW.1	Alias of B.1.1.529.5.3.1.1.2.1.1 found mainly in Costa Rica, from #1564
BE.1.3	Alias of B.1.1.529.5.3.1.1.3, Finland and Estonia lineage
BE.1.4	Alias of B.1.1.529.5.3.1.1.4, America lineage, ORF1b:V1787I
BE.1.4.1	Alias of B.1.1.529.5.3.1.1.4.1, S:A701V
BE.1.4.2	Alias of B.1.1.529.5.3.1.1.4.2, S:R346T
BE.1.4.3	Alias of B.1.1.529.5.3.1.1.4.3, Mexico, S:V445A
BE.1.4.4	Alias of B.1.1.529.5.3.1.1.4.4, S:L176F
BE.2	Alias of B.1.1.529.5.3.1.2, Belgium lineage
BE.3	Alias of B.1.1.529.5.3.1.3, USA lineage, from #723
BE.4	Alias of B.1.1.529.5.3.1.4, Bangladesh, defined by ORF1a:T3308N, from #1115
BE.4.1	Alias of B.1.1.529.5.3.1.4.1, Bangladesh, defined by S:P209L, S:R346T, from #1115
BE.4.1.1	Alias of B.1.1.529.5.3.1.4.1.1, Bangladesh, defined by S:K444R, from #1115
CQ.1	Alias of B.1.1.529.5.3.1.4.1.1.1, Bangladesh, defined by S:Y144- and 11866T
CQ.1.1	Alias of B.1.1.529.5.3.1.4.1.1.1.1, Canada/England, S:A262S
CQ.2	Alias of B.1.1.529.5.3.1.4.1.1.2, Japan/USA, defined by S:V445A, from #1232
BE.4.2	Alias of B.1.1.529.5.3.1.4.2, Bangladesh, defined by S:K444N & S:N460K, from #1114
BE.5	Alias of B.1.1.529.5.3.1.5, South Africa, S:R346T, from #1281
BE.6	Alias of B.1.1.529.5.3.1.6, France, S:R346S, on 28693C, 22624C
BE.7	Alias of B.1.1.529.5.3.1.7, South Africa, S:R346T on 28693C, 22624C, from #1280
BE.8	Alias of B.1.1.529.5.3.1.8, South Africa, S:R346T on 28693C, from #1278
BE.9	Alias of B.1.1.529.5.3.1.9, S:144-, S:444T, S:460K, on 28693C, Brazil, from #1302
BE.10	Alias of B.1.1.529.5.3.1.10, S:K444T, S:N460K, mainly Brazil, from #1411
BE.11	Alias of B.1.1.529.5.3.1.11, T3049C, on 28693C
BE.12	Alias of B.1.1.529.5.3.1.12, C10834T, T18975C, A29359G, on 28693C
BE.13	Alias of B.1.1.529.5.3.1.13, S:346T, S:478R, on 28693C, South Africa
BA.5.3.2	Alias of B.1.1.529.5.3.2, mainly found in Germany, from #697
BA.5.3.3	Alias of B.1.1.529.5.3.3, UK lineage
BA.5.3.4	Alias of B.1.1.529.5.3.4, Germany lineage
BA.5.3.5	Alias of B.1.1.529.5.3.5, mainly found in South Africa, from #1042
BA.5.5	Alias of B.1.1.529.5.5, mainly found in USA, from #656
BA.5.5.1	Alias of B.1.1.529.5.5.1, mainly found in USA, from #873
BA.5.5.2	Alias of B.1.1.529.5.5.2, mainly found in USA, Canada, England and Ireland, from #938
BA.5.5.3	Alias of B.1.1.529.5.5.3, USA lineage, from #1015
BA.5.6	Alias of B.1.1.529.5.6, USA lineage, from #738
BA.5.6.1	Alias of B.1.1.529.5.6.1, Peru lineage
BA.5.6.2	Alias of B.1.1.529.5.6.2, mainly found in USA, Belgium and Mexico, from #903
BW.1	Alias of B.1.1.529.5.6.2.1, Mexico lineage, defined by S:460K, from #1059
BW.1.1	Alias of B.1.1.529.5.6.2.1.1, Mexico lineage, defined by S:V486A, from #1341
BW.1.1.1	Alias of B.1.1.529.5.6.2.1.1.1, Mexico, ORF1a:L864F
BW.1.1.2	Alias of B.1.1.529.5.6.2.1.1.2, Mexico, ORF1b:P1101S
BW.1.2	Alias of B.1.1.529.5.6.2.1.2, Mexico lineage, defined by S:R346S
BA.5.6.3	Alias of B.1.1.529.5.6.3, mainly found in England, from #1118
BA.5.6.4	Alias of B.1.1.529.5.6.4, found in USA and Europe, from #1191
BA.5.7	Alias of B.1.1.529.5.7, Australia lineage
BA.5.8	Alias of B.1.1.529.5.8, mainly found in England, USA, Denmark and Scotland, from #743
BA.5.9	Alias of B.1.1.529.5.9, mainly found in Germany, Switzerland and Denmark, from #753
BA.5.10	Alias of B.1.1.529.5.10, mainly found in Philippines, Canada, and USA, from #936
BA.5.10.1	Alias of B.1.1.529.5.10.1, mainly from Philippines, defined by S:346T, from #1031
DF.1	Alias of B.1.1.529.5.10.1.1, found mainly in UK, from #1270
DF.1.1	Alias of B.1.1.529.5.10.1.1.1 found mainly in USA, from #1494
BA.5.11	Alias of B.1.1.529.5.11, South Africa, C1627T, S:R346T, from #1277
BA.5.12	Alias of B.1.1.529.5.12 found mainly in Switzerland, France and Germany, from #1640
B.1.2	USA
B.1.3	USA lineage
B.1.6	Belgian lineage
B.1.8	Netherlands, South Africa, Denmark, USA
B.1.12	Luxembourg lineage (also England, Belgium etc.)
B.1.13	UK lineage
B.1.14	USA lineage (CA)
B.1.22	Netherlands lineage
B.1.22.1	Curacao
B.1.23	New Zealand / Australia
B.1.35	Wales lineage
B.1.36	Global many sublineages (see below)
B.1.36.1	European/Denmark
B.1.36.2	UK
B.1.36.7	UK (reassigned from Oman lineage)
B.1.36.8	Predominantly Indian lineage with global records (inc. Canada)
B.1.36.9	UK
B.1.36.10	Jordan/Saudi Arabia (single recent record from USA)
B.1.36.12	England
B.1.36.16	SE Asia
B.1.36.17	UK lineage
B.1.36.18	Canadian lineage
B.1.36.19	Oceana
B.1.36.20	Mainly Scotland
B.1.36.21	Norway lineage
B.1.36.22	Lineage with sequences majoritively from Finland
B.1.36.23	UK
B.1.36.24	England with Global records
B.1.36.25	Denmark
B.1.36.26	Canada/USA
B.1.36.28	UK
B.1.36.27	Hong Kong lineage, initially associated with travellers from Nepal. Epidemiologically and phylogenetically supported.
B.1.36.29	India
B.1.36.31	UK/Global
B.1.36.33	Denmark
B.1.36.34	UK
B.1.36.35	European/Switzerland
B.1.36.36	Canada
B.1.36.37	Canada
B.1.36.38	Canada/UK
B.1.36.39	UK
B.1.37	USA lineage
B.1.38	USA
B.1.39	Denmark
B.1.40	Scotland lineage
B.1.44	Wales lineage
B.1.67	Wales lineage
B.1.69	Scotland
B.1.70	Scotland
B.1.76	English Lineage
B.1.77	English lineage
B.1.78	Netherlands lineage
B.1.81	UK lineage
B.1.83	Belgian lineage
B.1.84	DRC lineage
B.1.91	Portuguese lineage
B.1.93	UK lineage
B.1.94	Luxembourg
B.1.96	Netherlands lineage
B.1.97	England
B.1.103	USA
B.1.104	England
B.1.105	England
B.1.106	USA
B.1.108	USA
B.1.110	Chilean/ USA and Australia lineage
B.1.110.1	Chilean/ USA lineage
B.1.110.2	UK lineage
B.1.110.3	USA lineage
B.1.111	South/ Central American lineage (mostly Trinidad and Colombia, an a small cluster from Norwich)
B.1.112	USA/UT
B.1.113	Indian lineage
B.1.115	Israel and UK
B.1.116	USA lineage
B.1.117	UK lineage
B.1.118	Danish
B.1.119	USA lineage
B.1.120	Wales lineage
B.1.124	USA/WA
B.1.126	USA (MN) lineage
B.1.127	Denmark
B.1.128	Canada, Switzerland and DRC
B.1.131	European lineage
B.1.134	USA lineage
B.1.137	USA lineage
B.1.139	USA lineage
B.1.140	South African lineage
B.1.142	Wales lineage
B.1.143	Indian lineage
B.1.145	Indian lineage
B.1.146	Swiss lineage
B.1.147	Canadian lineage
B.1.149	DRC lineage
B.1.151	UK lineage
B.1.153	English lineage with some Australian, New Zealand and European sequences
B.1.157	UK/ Spanish lineage
B.1.158	Finland lineage
B.1.159	French lineage
B.1.160	Large European lineage, sequences from BeNeLuX, Denmark, Switzerland, Hungary and UK.
B.1.160.7	English Lineage
B.1.160.8	Denmark
B.1.160.9	Switzerland
B.1.160.10	Switzerland
B.1.160.11	Switzerland
B.1.160.12	Switzerland
B.1.160.13	Netherlands lineage
B.1.160.14	Switzerland
B.1.160.15	Mostly Switzerland
B.1.160.16	Mostly Switzerland
AB.1	Alias of B.1.160.16.1, Denmark, grown out of big swiss cluster
B.1.160.17	Denmark
B.1.160.18	Mayotte
B.1.160.19	Switzerland
B.1.160.20	Switzerland
B.1.160.21	Luxembourg
B.1.160.22	Switzerland, Germany, Austria
B.1.160.23	England
B.1.160.24	Denmark
B.1.160.25	French Guiana
B.1.160.26	Mostly Switzerland, a little Europe
B.1.160.27	Mayotte
B.1.160.28	Belgium and Luxembourg
B.1.160.29	Switzerland
B.1.160.30	Switzerland
B.1.160.31	Switzerland
B.1.160.32	Switzerland
B.1.160.33	Was part of B.1.160.7 but this is now split on tree. English lineage last seen 2020-11-18 in uk, but long branch to a recent French sample sticking out
B.1.161	USA
B.1.162	USA lineage
B.1.163	USA
B.1.164	Eastern Europe
B.1.165	England
B.1.166	USA lineage
B.1.167	Canada, England
B.1.168	Scottish lineage
B.1.169	USA, some previously B.1.333.1
B.1.170	Egypt UAE
B.1.173	England
B.1.177	Major mostly European lineage, result of opening borders summer 2020
B.1.177.2	English lineage
B.1.177.3	Welsh and English lineage
B.1.177.4	UK lineage
B.1.177.5	UK, mostly Scotland
B.1.177.6	Wales lineage
B.1.177.7	Wales lineage
B.1.177.8	Wales lineage
B.1.177.9	UK lineage
B.1.177.10	England
B.1.177.11	Scotland mostly, some England
B.1.177.12	Danish
B.1.177.14	Danish/ Norway lineage
B.1.177.15	English Welsh lineage
AA.1	Alias of B.1.177.15.1, European Lineage
AA.2	Alias of B.1.177.15.2, Welsh Lineage
AA.3	Alias of B.1.177.15.3, Welsh Lineage
AA.4	Alias of B.1.177.15.4, Welsh Lineage
AA.5	Alias of B.1.177.15.5, Welsh Lineage
AA.6	Alias of B.1.177.15.6, Welsh Lineage
AA.7	Alias of B.1.177.15.7, Welsh Lineage
AA.8	Alias of B.1.177.15.8, Welsh Lineage
B.1.177.16	UK lineage
B.1.177.17	UK, merged with B.1.177.13
B.1.177.18	England, some Wales, parent is mainland Europe
B.1.177.19	England, some Wales
B.1.177.20	England
B.1.177.21	Denmark
B.1.177.23	Swiss lineage
B.1.177.24	Danish lineage, contains some previous B.1.177.1
B.1.177.25	Gibraltar lineage
B.1.177.26	UK lineage
B.1.177.27	Danish
B.1.177.28	Swiss lineage
B.1.177.29	Spain
B.1.177.30	England
B.1.177.31	Swiss lineage
B.1.177.32	Swiss and Portuguese mostly
B.1.177.33	Mostly italian, some swiss, some english
B.1.177.34	Dutch
B.1.177.35	Danish, some Israel more recently
B.1.177.36	Dutch
B.1.177.37	Belgian
B.1.177.38	Dutch
B.1.177.39	Ireland andNorthern Ireland
B.1.177.40	Dutch
B.1.177.41	Danish and swedish
B.1.177.42	Danish
B.1.177.43	Swiss, then into Germany and Austria
B.1.177.44	Swiss mostly
B.1.177.45	Iceland
B.1.177.46	Sweden and Denmark
B.1.177.47	England
B.1.177.48	UK lineage
B.1.177.49	Spanish lineage
B.1.177.50	Netherlands / Germany
Z.1	Alias of B.1.177.50.1, UK lineage
B.1.177.51	European lineage
B.1.177.52	European lineage
Y.1	Alias of B.1.177.52.1, Portuguese lineage
B.1.177.53	UK lineage
W.1	Alias of B.1.177.53.1, French and USA lineage
W.2	Alias of B.1.177.53.2, Dutch lineage
W.3	Alias of B.1.177.53.3, UK lineage
W.4	Alias of B.1.177.53.4, UK lineage
B.1.177.54	UK lineage
V.1	Alias of B.1.177.54.1, Northern Irish and Irish lineage
V.2	Alias of B.1.177.54.2, Northern Irish lineage
B.1.177.55	England and Ireland
B.1.177.56	UK lineage
B.1.177.57	UK lineage
B.1.177.58	UK
B.1.177.59	Ireland
B.1.177.60	Northern Europe, mostly Lithuania
U.1	Alias of B.1.177.60.1, England
U.2	Alias of B.1.177.60.2, Denmark
U.3	Alias of B.1.177.60.3, Norway and Latvia
B.1.177.61	Spain
B.1.177.62	Germany, Switzerland, Netherlands
B.1.177.63	Wales
B.1.177.64	Ireland
B.1.177.65	Wales
B.1.177.66	Irish lineage
B.1.177.67	Irish lineage
B.1.177.68	Irish lineage
B.1.177.69	UK lineage
B.1.177.70	Danish lineage
B.1.177.71	Swiss lineage
B.1.177.72	Portuguese lineage
B.1.177.73	Netherlands lineage
B.1.177.74	Netherlands, Spain, UK
B.1.177.75	Italian lineage
B.1.177.76	Danish
B.1.177.77	Benelux + Denmark
B.1.177.78	French lineage
B.1.177.80	Scandinavian lineage
B.1.177.81	Large European lineage
B.1.177.82	Scandinavian lineage
B.1.177.83	Italian lineage
B.1.177.84	UK lineage
B.1.177.85	Portuguese lineage
B.1.177.86	German and Danish lineage
B.1.177.87	UK lineage
B.1.177.88	Italian lineage, from #19
B.1.177.89	Switzerland lineage
B.1.178	DRC lineage
B.1.179	Denmark
B.1.180	Romanian lineage
B.1.181	USA lineage
B.1.182	Spanish lineage
B.1.184	India
B.1.187	Polish lineage
B.1.188	USA (OR) lineage
B.1.189	USA/Mexico
B.1.190	Netherlands lineage
B.1.192	Equatorial Guinea
B.1.194	USA
B.1.195	UAE
B.1.198	UK lineage
B.1.199	USA
B.1.201	UK lineage
B.1.203	Panama/Costa Rica
B.1.206	USA
B.1.205	Peruvian
B.1.208	French lineage
B.1.210	Indian lineage
B.1.211	Belgium/ Luxembourg lineage
B.1.212	South American lineage
B.1.213	Polish lineage
B.1.214	DRC/ Congo lineage
B.1.214.1	Congo/ France lineage, from #21
B.1.214.2	Lineage from Belgium with a number of key spike mutations and a 9bp spike insertion, from #20
B.1.214.3	France, Belgium and Mayotte lineage, from #20
B.1.214.4	Danish lineage, from #20
B.1.215	Scottish lineage
B.1.218	Swiss lineage
B.1.219	Suriname lineage
B.1.220	European lineage
B.1.221	European lineage
B.1.221.1	UK lineage
B.1.221.2	German lineage
B.1.221.3	Danish lineage
B.1.221.4	Belgium/ Luxembourg lineage
B.1.222	Scottish lineage
B.1.223	UK lineage
B.1.224	Austrian lineage
B.1.225	UK lineage
B.1.227	Sweden
B.1.229	UK lineage
B.1.231	UK lineage
B.1.232	USA/ Scottish lineage
B.1.233	USA lineage
B.1.234	USA lineage
B.1.235	UK
B.1.236	Swiss lineage
B.1.237	South african lineage
B.1.238	UK lineage
B.1.239	USA lineage
B.1.240	USA
B.1.240.1	Curacao and Aruba
B.1.240.2	England
B.1.241	USA lineage
B.1.243	USA lineage
B.1.243.1	Emergent lineage in Arizona with a number of defining amino acid mutations, including S:E484K and S:V213G. Described in Skidmore et al 2021. https://www.medrxiv.org/content/10.1101/2021.03.26.21254367v1.full.pdf, from #35
B.1.243.2	Mexico lineage, from #169
B.1.242	Norway lineage
B.1.245	USA/CA
B.1.247	India
B.1.249	England
B.1.248	Scotland
B.1.250	England
B.1.251	England
B.1.252	Wales
B.1.254	Scotland
B.1.256	Scottish lineage
B.1.258	UK lineage
B.1.258.2	Irish lineage (has sub-lineage G.1)
G.1	Alias of B.1.258.2.1, UK lineage
B.1.258.3	UK lineage
B.1.258.4	UK lineage
B.1.258.5	UK lineage
B.1.258.6	UK lineage
B.1.258.7	UK lineage
B.1.258.9	Danish lineage
B.1.258.10	Scottish lineage
B.1.258.11	Danish lineage
B.1.258.12	UK lineage
B.1.258.14	Italian lineage
B.1.258.15	Danish lineage
B.1.258.16	Swiss/ Danish lineage
B.1.258.17	European lineage
B.1.258.18	Netherlands lineage
B.1.258.19	Danish lineage
B.1.258.20	Luxembourg lineage
B.1.258.21	Netherlands lineage
B.1.258.22	Swedish lineage
B.1.258.23	USA (UT) lineage
B.1.258.24	Italian lineage
B.1.260	Saudi Arabian lineage
B.1.263	Danish
B.1.264	USA (UT)
B.1.264.1	Russia, Germany, Switzerland, Austria. Was B.1.412
B.1.265	USA lineage
B.1.267	USA (CA)
B.1.268	USA
B.1.270	Canadian lineage
B.1.273	French lineage
B.1.274	Utah lineage
B.1.276	USA lineage
B.1.277	European lineage
B.1.279	Canadian lineage
B.1.280	USA
B.1.281	Bahrain lineage
B.1.282	UK lineage
B.1.284	USA - Texas
B.1.285	USA - Texas
B.1.287	USA lineage
B.1.289	USA - Arizona
B.1.291	Costa Rica
B.1.292	Gambia
B.1.293	USA
B.1.294	USA - WI and MN
B.1.298	USA (north east)
B.1.301	USA , some B.1.2 merged in
B.1.302	USA, New England
B.1.304	USA
B.1.305	USA, mostly TX
B.1.306	USA lineage
B.1.308	Northern USA and Canada
B.1.309	USA lineage
B.1.310	Netherlands
B.1.311	USA lineage
B.1.313	USA (removed the polytomy at the base of the lineage)
B.1.314	North American lineage
B.1.315	USA lineage
B.1.316	Canada lineage
B.1.318	USA (FL)
B.1.319	USA and Australia
B.1.320	USA
B.1.321	Belgium, England
B.1.323	USA (NY)
B.1.324	USA
B.1.325	USA (TX)
B.1.326	USA (TX)
B.1.328	USA
B.1.329	German
B.1.330	USA (MN)
B.1.332	USA
B.1.333	USA lineage WA
B.1.334	USA lineage
B.1.335	USA lineage
B.1.336	USA lineage
B.1.337	USA lineage
B.1.338	Australia
B.1.340	USA lineage
B.1.341	USA lineage
B.1.342	Sweden
B.1.344	USA (CO)
B.1.346	USA lineage
B.1.348	USA lineage
B.1.349	USA lineage
B.1.350	Canada
B.1.350.1	England
B.1.351	Lineage of concern detected in South Africa
B.1.351.1	Sublineage of B.1.351 circulating in Botswana
B.1.351.2	Sublineage of B.1.351 circulating in Mayotte
B.1.351.3	Sublineage of B.1.351 predominantly in Bangladesh and Singapore with exports elsewhere, from #65
B.1.351.5	Sublineage of B.1.351 in Spain, from #211
B.1.343	Denmark
B.1.354	Denmark
B.1.355	USA lineage
B.1.356	European, mostly dutch and spanish, some north american
B.1.357	USA (OR,WA,HI)
B.1.358	Danish lineage
B.1.359	USA lineage
B.1.360	USA
B.1.361	USA lineage (split from whatever Chris reassigns B.1.361 to)
B.1.362	Israel lineage
B.1.362.1	UK lineage
B.1.362.2	UK lineage
B.1.363	USA lineage
B.1.366	USA lineage
B.1.367	European lineage (mostly France and England)
B.1.369	USA/ New Zealand lineage
B.1.369.1	Canada lineage
B.1.370	USA lineage, cleaned up a lot in release 2021-01-20
B.1.371	Danish/ USA lineage, previously part of B.1.21
B.1.372	Danish lineage
B.1.375	USA lineage (circulating in Connecticut with the 69-70del, which leads to SGTF. However, they express 484E and 501N in their spike proteins.)
B.1.377	USA and England
B.1.378	USA
B.1.379	UK
B.1.380	Rwanda / Uganda
B.1.381	South Africa
B.1.382	USA
B.1.383	Wales
B.1.384	USA lineage
B.1.385	USA
B.1.387	French lineage
B.1.388	Cote d'Ivoire lineage
B.1.389	England + Europe
B.1.390	USA
B.1.391	UK
B.1.393	Uganda
B.1.395	Wales
B.1.396	USA lineage
B.1.397	USA lineage
B.1.398	European lineage
B.1.399	USA
B.1.400	USA lineage
B.1.400.1	USA lineage, from #94
B.1.401	USA lineage
B.1.402	USA lineage
B.1.403	USA lineage
B.1.404	USA lineage
B.1.405	USA lineage
B.1.406	Germany/ UK lineage
B.1.407	UK lineage
B.1.408	UK/ Romanian lineage
B.1.409	USA lineage
B.1.411	Sri Lankan lineage
B.1.413	USA
B.1.415	USA
B.1.415.1	Predominantly Mexico lineage, from #157
B.1.416	Senegal/ Gambian lineage, reassigned from B.1.5.12
B.1.416.1	European lineage within diversity of B.1.416. Previously assigned E.1
B.1.417	South African lineage
B.1.418	Scottish lineage
B.1.420	Colombian lineage
B.1.421	USA lineage
B.1.422	Canada mostly
B.1.423	USA lineage
B.1.424	USA lineage
B.1.425	USA lineage
B.1.426	USA (UT) lineage
B.1.427	USA lineage (CA)
B.1.428	Danish lineage (amalgam of Danish sequences from B.1.358, B.1.288, B.1.262)
B.1.428.1	Iraq
B.1.428.2	Tunisia, England, France
B.1.428.3	UAE, Jordan
B.1.429	A lineage predominantly circulating in California but with exports to other countries. Characterised by the spike L452R mutation but also has spike:W152C orf1ab:D5584Y, and N:T205I, from #3
B.1.429.1	Colorado lineage, from #37
B.1.431	Scotland
B.1.432	USA lineage
B.1.433	USA lineage
B.1.434	Australian lineage (previously a couple part of B.1.25, B.1.295)
B.1.435	USA - UT
B.1.436	USA lineage reassigned from previous tree
B.1.437	USA - FL
B.1.438	Lineage circulating in multiple countries, from #48
B.1.438.1	Canada lineage
B.1.438.2	Mayotte and Reunion lineage
B.1.438.3	USA lineage
B.1.438.4	USA lineage
B.1.439	USA
B.1.441	Global lineage (inc. merge of B.1.274)
B.1.442	USA
B.1.443	USA lineage
B.1.444	USA Utah lineage
B.1.445	USA (AZ)
B.1.446	USA, some B.1.333
B.1.448	USA lineage
B.1.450	USA (TX)
B.1.451	USA lineage (VA), previously B.1.328 and B.1.317
B.1.452	USA (CA)
B.1.453	USA (CA and TX)
B.1.456	SE Asian (reassigned)
B.1.458	India
B.1.459	Indonesia
B.1.460	UK lineage
B.1.462	UK/Nigeria
B.1.463	Finland
B.1.465	UK, contains B.1.466 which is reassigned (see below)
B.1.466	Global lineage containing two new sublineages (see below)
B.1.466.1	USA/UAE
B.1.466.2	Indonesia, from #30
AU.1	Alias of B.1.466.2.1, predominantly Papua New Guinea with some Australia sequences
AU.2	Alias of B.1.466.2.2, Malaysia lineage
AU.3	Alias of B.1.466.2.3, predominantly Australia with some Papua New Guinea and Singapore sequences
B.1.467	Nigeria/Switzerland
B.1.468	Indonesia/Singapore. Seq names misassigned in original file
B.1.469	European (Turkey, Denmark, UK)
B.1.470	Indonesia/Singapore
B.1.471	UK with global representation
B.1.473	USA lineage
B.1.474	Denmark/ Luxembourg lineage
B.1.475	German lineage
B.1.476	West African lineage
B.1.478	USA lineage
B.1.479	USA lineage
B.1.480	England, Australia, Sweden, Norway
B.1.482	France/ West African lineage
B.1.483	USA lineage
B.1.485	USA lineage
B.1.486	USA (MA)
B.1.487	USA - TX
B.1.488	Denmark and Sweden
B.1.489	Wales and Norway
B.1.490	Finland.
B.1.491	England
B.1.492	USA - Colorado
B.1.493	USA (FL)
B.1.494	USA (Split from B.1.3)
B.1.495	USA (Split from B.1.3)
B.1.496	USA (could be dissolved - sequences jumped out, previously split from B.1.3)
B.1.497	South Korea (was B.1.3.1)
B.1.498	USA (Split from B.1.3)
B.1.499	Mostly Argentina, some Spain, NL, Hong Kong (was B.1.3.2)
B.1.499.1	USA lineage
B.1.500	USA (split from B.1.3)
B.1.501	USA (Split from B.1.3)
B.1.502	USA (Split from B.1.3)
B.1.503	USA (Split from B.1.3)
B.1.504	Israel and England (was B.1.3.3)
B.1.505	Israel and england (was B.1.3.4)
B.1.506	USA (NY, split from B.1.3)
B.1.507	USA (MI, NY, split from B.1.3)
B.1.508	USA (NY, AZ, split from B.1.3)
B.1.509	USA (split from B.1.3, mostly FL)
B.1.510	Iceland, Sweden, North America (could be dissolved)
B.1.511	USA lineage
B.1.513	Northern Europe
B.1.515	USA (Utah)
B.1.516	USA (AZ and NM)
B.1.517	USA (mostly AZ)
B.1.517.1	Australia
B.1.518	USA
B.1.520	USA, Canada, England, Germany etc. (could be dissolved / reassigned to B.1)
B.1.521	USA lineage
B.1.523	UK/Australia
B.1.524	Malaysian lineage
B.1.525	International lineage with E484K, del69-70 among other defining mutations, from #4
B.1.526	A lineage predominantly circulating in New York but with a few exports to other countries. Characterised by spike mutations T95I and D253G, plus others. The most frequent spike mutation pattern is L5F T95I D253G E484K D614G A701V, with a smaller fraction having S477N instead of E484K. Spike mutation E484K is present in about half of this lineage (as of 2021-02-10) - Very possible not all new additions carry T95I and D253G (someone should check this, e.g. for USA/NY-Wadsworth-21008455-01/2021 and Aruba/AW-RIVM-11403/2021), from #6
B.1.527	Czech Republic/ Ukraine lineage
B.1.528	Moroccan lineage
B.1.529	French lineage
B.1.530	Kenya
B.1.531	England
B.1.532	England
B.1.533	Saudi Arabia
B.1.534	Denmark
B.1.535	Australia
B.1.536	Denmark
B.1.537	India
B.1.538	India
B.1.539	USA
B.1.540	India
B.1.541	USA lineage
B.1.542	Spain
B.1.543	USA
B.1.544	Congo/ Cameroon/ USA lineage
B.1.545	New Zealand
B.1.546	USA
B.1.547	Canada
B.1.548	India
B.1.549	Kenya + England
B.1.550	USA lineage
B.1.551	USA lineage
B.1.552	North American
B.1.554	USA (UT) lineage
B.1.555	Sweden
B.1.556	USA lineage
B.1.557	Northern Ireland
B.1.558	USA/ Mexico lineage
B.1.559	Scotland
B.1.560	India
B.1.561	USA - contains previous B.1.404
B.1.562	England base, to Ireland
B.1.563	UK lineage
B.1.564	USA lineage, split out from B.1.369
B.1.564.1	Canada lineage
B.1.565	USA - contains previous B.1.139
B.1.566	USA - Arizona and Texas
B.1.567	USA lineage, formally part of B.1.2
B.1.568	USA lineage, split out from B.1.361
B.1.569	USA (CA and TX)
B.1.570	USA (CO)
B.1.571	USA lineage, split out from B.1.369
B.1.572	USA, split from B.1.325
B.1.573	Canada (BC)
B.1.574	USA lineage, split out from B.1.363
B.1.575	USA and Aruba lineage with spike mutations "S:P681H","S:S494P" and "S:T716I"
B.1.575.1	Spanish sub lineage of B.1.575 with spike mutations "S:P681H","S:S494P" and "S:T716I", from #64
B.1.575.2	Spain lineage, from #116
B.1.576	USA lineage, formally part of B.1.363
B.1.577	USA lineage, formally part of B.1.2
B.1.578	USA, formally part of B.1.313
B.1.579	USA (AZ) formally part of B.1.516
B.1.580	USA Southern (some B.1.361)
B.1.581	USA (TX)
B.1.582	USA (TX some B.1.361)
B.1.585	USA lineage
B.1.586	USA lineage (previously part of B.1.320 that jumped to a new part of the tree)
B.1.587	USA (OR) lineage
B.1.588	USA (NY/PR) lineage
B.1.588.1	Romanian lineage
B.1.589	USA lineage
B.1.590	USA lineage
B.1.591	USA lineage
B.1.592	Canadian lineage
B.1.593	USA lineage
B.1.594	USA lineage
B.1.595	USA (was B.1.2)
B.1.595.1	USA (FL into Louisiana)
B.1.595.2	USA (AZ)
B.1.595.3	USA (up the east coast)
B.1.595.4	USA (MN)
B.1.596	USA lineage
B.1.596.1	Kenyan lineage
B.1.597	France, Algeria (previously part of B.1.367 that jumped to a new part of the tree)
B.1.598	Canada (from NY)
B.1.599	USA, Canada (previously part of B.1.311 that jumped to a new part of the tree)
B.1.600	Bolivia/ Spain lineage
B.1.601	USA lineage
B.1.602	USA lineage
B.1.603	USA lineage
B.1.604	USA lineage
B.1.605	USA lineage
B.1.606	USA lineage (previously part of B.1.325 that jumped to a new part of the tree)
B.1.607	England (previously part of B.1.369 that jumped to a new part of the tree - could also be withdrawn).
B.1.609	USA/ Mexico lineage
B.1.610	UK lineage, previously part of B.1.235
B.1.611	Canada lineage
B.1.612	USA lineage, split out from B.1.361
B.1.613	Danish lineage (amalgam of Danish sequences from B.1.358, B.1.288, B.1.262), split out from B.1.428
B.1.614	Sweden
B.1.615	Canada
B.1.616	France lineage, from #31
B.1.617	Predominantly India lineage with several spike mutations, from #38
B.1.617.1	Predominantly India lineage with 484Q, from #49
B.1.617.2	Predominantly India lineage with several spike mutations, from #49
AY.1	Alias of B.1.617.2.1, in several European countries, from #95
AY.2	Alias of B.1.617.2.2, in USA with K417N, from #107
AY.3	Alias of B.1.617.2.3, USA lineage, from #121
AY.3.1	Alias of B.1.617.2.3.1, USA lineage, from #147
AY.3.2	Alias of B.1.617.2.3.2, Peru lineage, from #312
AY.3.3	Alias of B.1.617.2.3.3, USA lineage, from #365
AY.3.4	Alias of B.1.617.2.3.4, Bahrain lineage
AY.4	Alias of B.1.617.2.4, UK lineage, from #180
AY.4.1	Alias of B.1.617.2.4.1, UK lineage, from #214
AY.4.2	Alias of B.1.617.2.4.2, predominantly UK lineage, from #223
AY.4.2.1	Alias of B.1.617.2.4.2.1, predominantly UK lineage, from #248
AY.4.2.2	Alias of B.1.617.2.4.2.2, UK lineage, from #249
AY.4.2.3	Alias of B.1.617.2.4.2.3, European lineage, from #356
AY.4.2.4	Alias of B.1.617.2.4.2.4, European lineage
AY.4.2.5	Alias of B.1.617.2.4.2.5, UK lineage, from #543
AY.4.3	Alias of B.1.617.2.4.3, lineage in several countries, from #222
AY.4.4	Alias of B.1.617.2.4.4, lineage in several European countries, from #237
AY.4.5	Alias of B.1.617.2.4.5, predominantly Lithuania lineage, from #241
AY.4.6	Alias of B.1.617.2.4.6, European lineage, from #264
AY.4.7	Alias of B.1.617.2.4.7, lineage in Aruba and other countries, from #291
AY.4.8	Alias of B.1.617.2.4.8, UK lineage, from #304
AY.4.9	Alias of B.1.617.2.4.9, European lineage, from #332
AY.4.10	Alias of B.1.617.2.4.10, European lineage, from #332
AY.4.11	Alias of B.1.617.2.4.11, European lineage
AY.4.12	Alias of B.1.617.2.4.12, Canada lineage
AY.4.13	Alias of B.1.617.2.4.13, European lineage
AY.4.14	Alias of B.1.617.2.4.14, lineage in Denmark and other countries
AY.4.15	Alias of B.1.617.2.4.15, Denmark lineage
AY.4.16	Alias of B.1.617.2.4.16, Gibraltar lineage
AY.4.17	Alias of B.1.617.2.4.17, Lithuania lineage
AY.5	Alias of B.1.617.2.5, UK lineage, from #180
AY.5.1	Alias of B.1.617.2.5.1, Portugal lineage
AY.5.2	Alias of B.1.617.2.5.2, Portugal lineage
AY.5.3	Alias of B.1.617.2.5.3, USA lineage
AY.5.4	Alias of B.1.617.2.5.4, European lineage
AY.5.5	Alias of B.1.617.2.5.5, European lineage, formally AY.97, from #363
AY.5.6	Alias of B.1.617.2.5.6, lineage in Saint Vincent and the Grenadines, Grenada and other countries
AY.5.7	Alias of B.1.617.2.5.7, mainly found in Israel, from #387
AY.6	Alias of B.1.617.2.6, UK lineage, from #180
AY.7	Alias of B.1.617.2.7, UK lineage, from #180
AY.7.1	Alias of B.1.617.2.7.1, Denmark lineage
AY.7.2	Alias of B.1.617.2.7.2, predominantly Italy lineage in multiple other European countries
AY.8	Alias of B.1.617.2.8, UK lineage, from #180
AY.9	Alias of B.1.617.2.9, UK lineage, from #180
AY.9.2	Alias of B.1.617.2.9.2, European lineage
AY.9.2.1	Alias of B.1.617.2.9.2.1, Canada lineage
AY.9.2.2	Alias of B.1.617.2.9.2.2, Sweden lineage, from #284
AY.10	Alias of B.1.617.2.10, UK lineage, from #180
AY.11	Alias of B.1.617.2.11, UK lineage, from #142
AY.13	Alias of B.1.617.2.13, USA lineage, from #198
AY.14	Alias of B.1.617.2.14, USA lineage, from #198
AY.15	Alias of B.1.617.2.15, Canada lineage, from #198
AY.16	Alias of B.1.617.2.16, lineage in Kenya and multiple other countries, from #198
AY.16.1	Alias of B.1.617.2.16.1, France lineage
AY.17	Alias of B.1.617.2.17, Ireland and Northern Ireland lineage, from #198
AY.18	Alias of B.1.617.2.18, Canada lineage, from #198
AY.19	Alias of B.1.617.2.19, South Africa lineage, from #198
AY.20	Alias of B.1.617.2.20, USA and Mexico lineage, from #198
AY.20.1	Alias of B.1.617.2.20.1, Czech Republic lineage, from #318
AY.21	Alias of B.1.617.2.21, lineage predominantly in Italy and Switzerland, from #198
AY.22	Alias of B.1.617.2.22, predominantly Portugal lineage, from #198
AY.23	Alias of B.1.617.2.23, predominantly Singapore and Indonesia lineage, from #175
AY.23.1	Alias of B.1.617.2.23.1, Singapore lineage, from #237
AY.23.2	Alias of B.1.617.2.23.2, European lineage, from #265
AY.24	Alias of B.1.617.2.24, predominantly Indonesia lineage, from #175
AY.24.1	Alias of B.1.617.2.24.1, Brunei lineage
AY.25	Alias of B.1.617.2.25, USA lineage, from #181
AY.25.1	Alias of B.1.617.2.25.1, Canada and USA lineage, from #313
AY.25.1.1	Alias of B.1.617.2.25.1.1, Peru lineage, from #355
AY.25.1.2	Alias of B.1.617.2.25.1.2, Trinidad and Tobago lineage
AY.25.2	Alias of B.1.617.2.25.2, Argentina lineage
AY.25.3	Alias of B.1.617.2.25.3, Canada and USA lineage
AY.26	Alias of B.1.617.2.26, USA and Mexico lineage, from #188
AY.26.1	Alias of B.1.617.2.26.1, Peru lineage, from #278
AY.27	Alias of B.1.617.2.27, Canada lineage, from #196
AY.28	Alias of B.1.617.2.28, Sri Lanka lineage, from #199
AY.29	Alias of B.1.617.2.29, Japan lineage, from #208
AY.29.1	Alias of B.1.617.2.29.1, Japan lineage, from #224
AY.29.2	Alias of B.1.617.2.29.2, Japan lineage, from #381
AY.30	Alias of B.1.617.2.30, Thailand and Cambodia lineage, from #207
AY.31	Alias of B.1.617.2.31, lineage associated with Myanmar. At the time of designation, almost all sequences in this lineage were from Myanmar or had travel history from Myanmar, from #206
AY.32	Alias of B.1.617.2.32, South Africa lineage, from #209
AY.33	Alias of B.1.617.2.33, Lineage circulating mostly in Belgium, Denmark, France, Netherlands, Germany, from #215 and #219
AY.33.1	Alias of B.1.617.2.33.1, Reunion and France lineage, from #370
AY.33.2	Alias of B.1.617.2.33.2, mainly found in Germany, Poland, Gibraltar and Spain, from #403
AY.34	Alias of B.1.617.2.34, lineage with spike Q677H circulating in multiple countries, from #217
AY.34.1	Alias of B.1.617.2.34.1, lineage in multiple countries including Gambia, Senegal, Benin and Mali, from #255
AY.34.1.1	Alias of B.1.617.2.34.1.1, Brazil and Chile lineage, from #255
AY.34.2	Alias of B.1.617.2.34.2, lineage in multiple countries including Martinique, from #269
AY.35	Alias of B.1.617.2.35, lineage with spike E484Q circulating in USA, from #217
AY.36	Alias of B.1.617.2.36, lineage predominantly in Nigeria, UK and USA, from #225
AY.36.1	Alias of B.1.617.2.36.1, lineage in Germany and other countries, from #434
AY.37	Alias of B.1.617.2.37, lineage predominantly in Liberia, USA and France, from #228
AY.38	Alias of B.1.617.2.38, lineage predominantly in South Africa, from #229
AY.39	Alias of B.1.617.2.39, predominantly USA lineage, from #234
AY.39.1	Alias of B.1.617.2.39.1, Australia and USA lineage, from #234
AY.39.1.1	Alias of B.1.617.2.39.1.1, predominantly New Zealand lineage, from #234
AY.39.1.2	Alias of B.1.617.2.39.1.2, Australia lineage, from #307
AY.39.1.3	Alias of B.1.617.2.39.1.3, Australia lineage, from #339
AY.39.1.4	Alias of B.1.617.2.39.1.4, Australian lineage, from #438
AY.39.2	Alias of B.1.617.2.39.2, Peru lineage, from #295
AY.39.3	Alias of B.1.617.2.39.3, Trinidad and Tobago lineage
AY.40	Alias of B.1.617.2.40, Reunion lineage, from #237
AY.41	Alias of B.1.617.2.41, European lineage, from #237
AY.42	Alias of B.1.617.2.42, European lineage, from #239
AY.42.1	Alias of B.1.617.2.42.1, lineage in Bonaire, Curacao and other countries, from #331
AY.43	Alias of B.1.617.2.43, European lineage, from #240
AY.43.1	Alias of B.1.617.2.43.1, Brazil lineage, from #319
AY.43.2	Alias of B.1.617.2.43.2, Brazil lineage, from #319
AY.43.3	Alias of B.1.617.2.43.3, Chile lineage, from #337
AY.43.4	Alias of B.1.617.2.43.4, Switzerland lineage, from #317
AY.43.5	Alias of B.1.617.2.43.5, Portugal lineage, from #335
AY.43.6	Alias of B.1.617.2.43.6, Denmark lineage, from #315
AY.43.7	Alias of B.1.617.2.43.7, Brazil lineage, from #378
AY.43.8	Alias of B.1.617.2.43.8, lineage in Netherlands, Suriname and other countries
AY.43.9	Alias of B.1.617.2.43.9, Slovakia lineage
AY.44	Alias of B.1.617.2.44, USA lineage, from #242
AY.45	Alias of B.1.617.2.45, South Africa lineage, from #246
AY.46	Alias of B.1.617.2.46, Africa lineage, from #247
AY.46.1	Alias of B.1.617.2.46.1, USA lineage, from #247
AY.46.2	Alias of B.1.617.2.46.2, Germany and Turkey lineage, from #247
AY.46.3	Alias of B.1.617.2.46.3, Brazil lineage, from #247
AY.46.4	Alias of B.1.617.2.46.4, USA lineage, from #247
AY.46.5	Alias of B.1.617.2.46.5, UK lineage, from #247
AY.46.6	Alias of B.1.617.2.46.6, European lineage, from #247
AY.46.6.1	Alias of B.1.617.2.46.6.1, Italy lineage, from #369
AY.47	Alias of B.1.617.2.47, USA lineage, from #254
AY.48	Alias of B.1.617.2.48, USA lineage
AY.49	Alias of B.1.617.2.49, USA lineage
AY.50	Alias of B.1.617.2.50, Ireland lineage
AY.51	Alias of B.1.617.2.51, European lineage
AY.52	Alias of B.1.617.2.52, USA lineage
AY.53	Alias of B.1.617.2.53, European lineage
AY.54	Alias of B.1.617.2.54, USA lineage
AY.55	Alias of B.1.617.2.55, lineage in Rwanda and other countries
AY.56	Alias of B.1.617.2.56, USA lineage
AY.57	Alias of B.1.617.2.57, Vietnam lineage
AY.58	Alias of B.1.617.2.58, European lineage, from #286
AY.59	Alias of B.1.617.2.59, Malaysia lineage
AY.60	Alias of B.1.617.2.60, European lineage
AY.61	Alias of B.1.617.2.61, Italy lineage
AY.62	Alias of B.1.617.2.62, USA and Mexico lineage
AY.63	Alias of B.1.617.2.63, Norway lineage, from #286
AY.64	Alias of B.1.617.2.64, USA lineage
AY.65	Alias of B.1.617.2.65, lineage in Bahrain and other countries
AY.66	Alias of B.1.617.2.66, European lineage, from #271
AY.67	Alias of B.1.617.2.67, USA lineage
AY.68	Alias of B.1.617.2.68, European lineage
AY.69	Alias of B.1.617.2.69, South Korea lineage, from #260
AY.70	Alias of B.1.617.2.70, European lineage
AY.71	Alias of B.1.617.2.71, European lineage
AY.72	Alias of B.1.617.2.72, European lineage
AY.73	Alias of B.1.617.2.73, European lineage
AY.74	Alias of B.1.617.2.74, Canada lineage
AY.75	Alias of B.1.617.2.75, USA and European lineage
AY.75.2	Alias of B.1.617.2.75.2, Philippines lineage
AY.75.3	Alias of B.1.617.2.75.3, Japan lineage
AY.76	Alias of B.1.617.2.76, predominantly Malaysia lineage
AY.77	Alias of B.1.617.2.77, USA lineage
AY.78	Alias of B.1.617.2.78, Germany and Turkey lineage
AY.79	Alias of B.1.617.2.79, predominantly Malaysia lineage
AY.80	Alias of B.1.617.2.80, European lineage
AY.81	Alias of B.1.617.2.81, USA lineage
AY.82	Alias of B.1.617.2.82, Fiji lineage
AY.83	Alias of B.1.617.2.83, USA lineage
AY.84	Alias of B.1.617.2.84, European lineage
AY.85	Alias of B.1.617.2.85, Thailand lineage
AY.86	Alias of B.1.617.2.86, Canada and USA lineage
AY.87	Alias of B.1.617.2.87, UK lineage
AY.88	Alias of B.1.617.2.88, lineage in Ghana and other countries
AY.90	Alias of B.1.617.2.90, UK lineage
AY.91	Alias of B.1.617.2.91, lineage in South Africa, Namibia and other countries
AY.91.1	Alias of B.1.617.2.91.1, European lineage
AY.92	Alias of B.1.617.2.92, European lineage
AY.93	Alias of B.1.617.2.93, Canada lineage
AY.94	Alias of B.1.617.2.94, European lineage
AY.95	Alias of B.1.617.2.95, Maldives and European lineage
AY.98	Alias of B.1.617.2.98, UK lineage
AY.98.1	Alias of B.1.617.2.98.1, European lineage
AY.98.1.1	Alias of B.1.617.2.98.1.1, mainly found in Germany and Denmark, from #604
AY.99	Alias of B.1.617.2.99, South Africa and Nigeria lineage, from #258
AY.99.1	Alias of B.1.617.2.99.1, Brazil lineage, from #258
AY.99.2	Alias of B.1.617.2.99.2, Brazil lineage, from #258
AY.100	Alias of B.1.617.2.100, USA lineage
AY.101	Alias of B.1.617.2.101, Brazil and Chile lineage
AY.102	Alias of B.1.617.2.102, Peru and Chile lineage, from #272
AY.102.1	Alias of B.1.617.2.102.1, Peru lineage, from #325
AY.102.2	Alias of B.1.617.2.102.2, Peru lineage, from #330
AY.103	Alias of B.1.617.2.103, USA lineage
AY.103.1	Alias of B.1.617.2.103.1, Argentina lineage
AY.103.2	Alias of B.1.617.2.103.2, Canada lineage
AY.104	Alias of B.1.617.2.104, Sri Lanka lineage, from #289
AY.105	Alias of B.1.617.2.105, USA lineage
AY.106	Alias of B.1.617.2.106, lineage in Jordan and other countries, from #287
AY.107	Alias of B.1.617.2.107, USA lineage
AY.108	Alias of B.1.617.2.108, lineage in Pakistan and other countries
AY.109	Alias of B.1.617.2.109, lineage in Nigeria and other countries
AY.110	Alias of B.1.617.2.110, USA lineage
AY.111	Alias of B.1.617.2.111, UK lineage
AY.112	Alias of B.1.617.2.112, lineage in India and other countries, from #283
AY.112.1	Alias of B.1.617.2.112.1, Bahrain lineage, from #283
AY.112.2	Alias of B.1.617.2.112.2, mainly found in India, from #385
AY.112.3	Alias of B.1.617.2.112.3, mainly found in Israel, from #388
AY.113	Alias of B.1.617.2.113, USA and Mexico lineage
AY.114	Alias of B.1.617.2.114, USA lineage
AY.116	Alias of B.1.617.2.116, Africa lineage
AY.116.1	Alias of B.1.617.2.116.1, USA lineage
AY.117	Alias of B.1.617.2.117, USA lineage
AY.118	Alias of B.1.617.2.118, USA lineage
AY.119	Alias of B.1.617.2.119, USA lineage
AY.119.1	Alias of B.1.617.2.119.1, Chile and Peru lineage, from #336
AY.119.2	Alias of B.1.617.2.119.2, USA lineage, from #288
AY.120	Alias of B.1.617.2.120, UK lineage
AY.120.1	Alias of B.1.617.2.120.1, USA lineage
AY.120.2	Alias of B.1.617.2.120.2, South Africa lineage
AY.120.2.1	Alias of B.1.617.2.120.2.1, European lineage
AY.121	Alias of B.1.617.2.121, European lineage, from #301
AY.121.1	Alias of B.1.617.2.121.1, Poland and Germany lineage, from #344
AY.122	Alias of B.1.617.2.122, European lineage, from #320
AY.122.1	Alias of B.1.617.2.122.1, Israel lineage, formally AY.12 but renamed as descends from AY.122 which was designated after AY.12, from #170
AY.122.2	Alias of B.1.617.2.122.2, Finland and Estonia lineage, from #273
AY.122.3	Alias of B.1.617.2.122.3, Denmark and Sweden lineage, from #371
AY.122.4	Alias of B.1.617.2.122.4, South America and USA lineage
AY.122.5	Alias of B.1.617.2.122.5, South Korea lineage
AY.122.6	Alias of B.1.617.2.122.6, mainly found in France, from #394
AY.123	Alias of B.1.617.2.123, Predominantly Belgium and France lineage, from #306
AY.123.1	Alias of B.1.617.2.123.1, Belgium lineage, from #354
AY.124	Alias of B.1.617.2.124, lineage in Portugal and other European countries, from #281
AY.124.1	Alias of B.1.617.2.124.1, lineage in Portugal and other European countries, from #345
AY.124.1.1	Alias of B.1.617.2.124.1.1, lineage in Mauritius and other countries
AY.125	Alias of B.1.617.2.125, European lineage, from #328
AY.125.1	Alias of B.1.617.2.125.1, Australia lineage
AY.126	Alias of B.1.617.2.126, European lineage, from #253
AY.127	Alias of B.1.617.2.127, lineage in India and other countries, from #342
AY.127.1	Alias of B.1.617.2.127.1, lineage in Djibouti and other countries, from #352
AY.127.2	Alias of B.1.617.2.127.2, Qatar lineage
AY.127.3	Alias of B.1.617.2.127.3, Qatar lineage, from #525
AY.128	Alias of B.1.617.2.128, lineage in Estonia, Georgia and other countries, from #309
AY.129	Alias of B.1.617.2.129, European lineage, from #329
AY.130	Alias of B.1.617.2.130, Bahrain lineage, from #351
AY.131	Alias of B.1.617.2.131, mainly reported from Bangladesh, from #373
AY.132	Alias of B.1.617.2.132, Denmark lineage, from #379
AY.133	Alias of B.1.617.2.133, France Germany and UK lineage (with some samples from elsewhere, notably Senegal and Ghana), from #380
AY.134	Alias of B.1.617.2.134, European lineage, previously assigned AY.39.4, from #406
B.1.617.3	Predominantly India lineage with 484Q, from #49
B.1.618	India lineage in West Bengal, from #46
B.1.619	Lineage in multiple countries, potentially originated in Cameroon and introduced into Europe, from #44
B.1.619.1	South Korea lineage, from #160
B.1.620	Lineage in multiple countries, potentially originated in Cameroon and spread within Europe post-introduction, from #54
B.1.621	Lineage predominantly in Colombia with several spike mutations, from #57
B.1.621.1	Lineage in multiple countries, from #115
BB.2	Alias of B.1.621.1.2, from #232
B.1.621.2	Lineage in multiple countries, from #232
B.1.622	Reunion lineage, from #58
B.1.623	Predominantly USA lineage with mutations of interest, from #25
B.1.625	Predominantly Colombia and USA lineage, from #93
B.1.626	Europe and USA lineage, from #118
B.1.627	USA, Mexico and Honduras lineage, from #130
B.1.629	Lineage circulating in several countries, from #132
B.1.630	Lineage in several countries, from #137
B.1.631	USA and Mexico lineage, from #146
B.1.632	Predominantly Mexico lineage, from #156
B.1.633	India lineage, from #155
B.1.634	Mexico and USA lineage, from #159
B.1.635	Mexico and USA lineage, from #159
B.1.636	USA, Mexico and Honduras lineage, from #173
B.1.637	Added as B.1.526.1 15 Mar 2021, but turned out not to be a descendant of B.1.526; was folded into B.1.526 from 14 Jun - 18 Aug 2021; now a separate lineage to leave B.1.526 more congruent with Iota (Nextstrain 21F / original B.1.526), from #154
B.1.637.1	USA lineage, from #353
B.1.638	South Africa lineage, from #205
B.1.639	Lineage sequenced in USA, potentially associated with Puerto Rico, from #161
B.1.640	Lineage in Africa and Europe, from #297
B.1.640.1	Lineage in Africa and Europe, from #362
B.1.640.2	Lineage, from #362
B.1.641	Lineage in white-tailed deer, from #453
B.1.9	European wide lineage with active sublineages
B.1.9.1	Scottish Lineage
B.1.9.2	USA
B.1.9.3	Belgium
B.1.9.4	European wide lineage with active cases with activity in Switzerland
B.1.9.5	European sublineage highly represented in Turkey
B.3	A European lineage - Germany & UK predominantly
B.3.1	Welsh lineage
B.4	Iranian lineage and global exports
B.4.1	Lineage from Kazakhstan within the B.4 diversity
B.4.2	Bahrain lineage
B.4.4	USA lineage
B.4.5	Australian lineage
B.4.6	Australian lineage
B.4.7	Africa and UAE
B.4.8	Cryptic lineage in Iran? Occasional international appearances, most recently Nov 2020
B.5	Japanese lineage
B.6	Indian lineage
B.6.1	Malaysian lineage
B.6.2	Malaysian lineage
B.6.3	Singapore lineage
B.6.4	Singapore lineage
B.6.5	Australian lineage
B.6.6	Singapore lineage
B.6.8	Papua New Guinea
B.10	Northern Irish lineage
B.11	European lineage with sequences from the Netherlands, UK, Austria, Slovakia
B.12	Japanese lineage
B.13	USA lineage
B.15	UK lineage
B.18	European lineage (Iceland and England)
B.19	USA lineage
B.20	USA lineage
B.23	Lineage with representation from mainly UK sequences, but also sequences from Portugal, Iceland and Brazil
B.26	Scottish lineage
B.27	UK lineage, Curacao, Switzerland
B.28	UK lineage
B.29	Spanish/UK/ Australian lineage
B.30	Reassigned from B.2.12, USA lineage
B.31	Reassigned from B.2.5, UK/ Australia/ New Zealand lineage
B.32	Scottish lineage
B.33	UK lineage
B.34	Scottish lineage
B.35	Previously B.2.6, USA lineage
B.36	Previously B.2.11, Israel lineage
B.37	USA lineage
B.38	Belgium lineage
B.39	Previously B.2.2, USA/ UK/ Australian lineage
B.40	Previously B.2.1. Large lineage majoritively from UK and Australia with representation from Europe, Jordan, USA, India, Ghana, South Korea
B.41	Previously B.2.10, South Korean lineage
B.42	Hong Kong lineage
B.43	Hong Kong lineage
B.44	Portugal lineage
B.45	Scottish lineage
B.46	USA lineage
B.47	English lineage
B.49	Danish lineage
B.50	Indonesian lineage
B.51	USA lineage
B.52	UK lineage
B.53	Lithuanian lineage
B.55	Redesignated from B.11 (split), UK/Danish
B.56	Singapore/Malaysia/Indonesia
B.57	Largely Scottish
B.58	Largely English, UK/Canada/Australia
B.60	England
B.61	Redesignated from B.40 (split), UK
XA	Recombinant lineage with parental lineages B.1.1.7 and B.1.177, UK lineage, from #63
XB	Recombinant lineage with parental lineages B.1.634 and B.1.631, Central and North America lineage, Formally B.1.628, from #189
XC	Recombinant lineage with parental lineages AY.29 and B.1.1.7, Japan lineage, from #263
XD	Recombinant lineage of Delta and BA.1, France and Denmark lineage, from #444
XE	Recombinant lineage of BA.1 and BA.2, UK lineage, from #454
XF	Recombinant lineage of Delta and BA.1, UK lineage, from #445
XG	Recombinant lineage of BA.1 and BA.2, Denmark lineage, from #447
XH	Recombinant lineage of BA.1 and BA.2, Denmark lineage, from #448
XJ	Recombinant lineage of BA.1 and BA.2, Finland lineage, from #449
XK	Recombinant lineage of BA.1 and BA.2, Belgium lineage, from #460
XL	Recombinant lineage of BA.1 and BA.2, UK lineage, from #464
XM	Recombinant lineage of BA.1.1 and BA.2, European lineage, from #472
XN	Recombinant lineage of BA.1 and BA.2, UK lineage, from #480
XP	Recombinant lineage of BA.1.1 and BA.2, UK lineage, from #481
XQ	Recombinant lineage of BA.1.1 and BA.2, UK lineage, from #468
XR	Recombinant lineage of BA.1.1 and BA.2, UK lineage, from #469
XS	Recombinant lineage of Delta and BA.1.1, USA lineage, from #471
XT	Recombinant lineage of BA.1 and BA.2, South Africa lineage, from #478
XU	Recombinant lineage of BA.1 and BA.2, lineage in India and other countries, from #522
XV	Recombinant lineage of BA.1 and BA.2, lineage in Denmark and Italy, from #463
XW	Recombinant lineage of BA.1 and BA.2, USA, Germany, England lineage, from #591
XY	Recombinant lineage of BA.1 and BA.2, predominantly in USA, from #606
XZ	Recombinant lineage of BA.2 and BA.1, USA lineage, from #636
XAA	Recombinant lineage of BA.1 and BA.2, USA lineage, from #664
XAB	Recombinant lineage of BA.1 and BA.2, Germany lineage, from #665
XAC	Recombinant lineage of BA.1 and BA.2, Canada and USA lineage, from #590
XAD	Recombinant lineage of BA.2 and BA.1, Germany lineage, from #607
XAE	Recombinant lineage of BA.2 and BA.1, USA and Chile lineage, from #637
XAF	Recombinant lineage of BA.1 and BA.2, Costa Rica lineage, from #676
XAG	Recombinant lineage of BA.1 and BA.2, lineage in Brazil and other countries, from #709
XAH	Recombinant lineage of BA.2 and BA.1, lineage in Slovenia and other countries, from #755
XAJ	Recombinant lineage of BA.2.12.1 and BA.4, predominantly in England, from #826
XAK	Recombinant lineage of BA.1 and BA.2, Germany lineage, from #823
XAL	Recombinant lineage of BA.1 and BA.2, Germany lineage, from #757
XAM	Recombinant lineage of BA.1.1 and BA.2.9, lineage mainly found in Panama and USA, from #759
XAN	Recombinant lineage of BA.2 and BA.5.1, lineage found most often in Spain and Denmark, from #771
XAP	Recombinant lineage of BA.2* and BA.1*, USA lineage, from #789
XAQ	Recombinant lineage of BA.1* and BA.2*, lineage mainly found in Canada, from #798
XAR	Recombinant lineage of BA.1* and BA.2*, Reunion lineage, from #860
XAS	Recombinant lineage of BA.5* and BA.2*, USA lineage, from #882
XAT	Recombinant lineage of BA.2.3.13 and BA.1*, Japan lineage, from #885
XAU	Recombinant lineage of BA.1.1* and BA.2.9*, predominantly in Spain, England and France, from #894
XAV	Recombinant lineage of BA.2* and BA.5*, mainly France, USA, and Scotland lineage, from #911
XAW	Recombinant lineage of BA.2* and AY.122, Russia lineage, from #895
XAY	Recombinant lineage of BA.2 and AY.45, South Africa lineage, from #844
XAY.1	South Africa/USA lineage with 4 AA substitutions including S:D253G, from #1208
XAY.1.1	South Africa with S:R346T and ORF1a:K2108N, from #1255
XAY.1.1.1	Europe, S:D1153Y, from #1569
GL.1	Alias of XAY.1.1.1.1, Europe, S:D420N, C19441T, from #2032
GL.2	Alias of XAY.1.1.1.2, ORF1a:S723P, South Korea/Japan/HongKong
GL.3	Alias of XAY.1.1.1.3, ORF1a:P1640S, Germany
XAY.1.1.2	Germany/South Africa, C14838T
XAY.1.1.3	Germany/China/Luxembourg, C6040T, C8290T, T15153C
XAY.1.2	Europe, ORF1a:T3646I
XAY.2	South Africa/Denmark/Israel lineage with ORF1a:Y3765C
XAY.2.1	Denmark, N:T24A
XAY.2.2	Denmark, ORF1a:N447S
XAY.2.3	Denmark, ORF1a:A131V, from #1896
XAY.3	South Africa/Mauritius/Switzerland/France, ORF1b:D1869Y
XAZ	Recombinant lineage of BA.2.5, BA.5. and BA.2.5, predominantly found in France, Germany, Croatia, Denmark and USA, from #797
XBA	Recombinant lineage of perhaps AY.45 and perhaps BA.2 (with perhaps 5 breakpoints), South_Africa lineage, constellation 2, from #844
XBB	Recombinant lineage of BJ.1 and BM.1.1.1 with breakpoint in S1, found in USA and Singapore, from #1058
XBB.1	Mostly Bangladesh and Singapore, defined by S:G252V, from #1088
XBB.1.1	Singapore/Denmark, defined by ORF1a:P309L
XBB.1.2	Singapore, defined by S:S640F
XBB.1.3	Singapore, India/Italy, defined by S:A484T, pre ORF8:8*
XBB.1.4	Europe, S:T883I
XBB.1.4.1	Mainly Denmark, Norway and Sweden, defined by S:S673G, from #1352
XBB.1.4.2	S:486P, ORf1a:V3595F, Brazil, from #2031
XBB.1.5	USA, S:F486P
XBB.1.5.1	USA, S:T573I
HJ.1	Alias of XBB.1.5.1.1, S:E324K, C4543T, USA
XBB.1.5.2	USA, S:T284I, S:K147I
XBB.1.5.3	USA, S:A411S
JK.1	Alias of XBB.1.5.3.1, S:K304Q, USA, from #1798
XBB.1.5.4	USA, S:T883I directly on XBB.1.5 polytomy
KM.1	Alias of XBB.1.5.4.1, S:K478R, S:M177I, S:N185D,  N:A155V, ORF1a:T3696A, Guinea/Senegal
XBB.1.5.5	USA, S:K1181I
XBB.1.5.6	USA, S:V952I
XBB.1.5.7	USA, ORF1b:V248F
EM.1	Alias of XBB.1.5.7.1, UK, S:R214L
XBB.1.5.8	USA, N:R10Q
XBB.1.5.9	USA, N:S327L
XBB.1.5.10	S:F456L (T22928C), USA-NC, from #1614
XBB.1.5.11	ORF1a:G401S
XBB.1.5.12	S:T323I
XBB.1.5.13	T21880C, G28079T
EK.1	Alias of XBB.1.5.13.1, S:K417S, Austria, from #1638
EK.2	Alias of XBB.1.5.13.2, S:T259I, USA
EK.2.1	Alias of XBB.1.5.13.2.1, S:478R, USA/Canada/Scotland
EK.3	Alias of XBB.1.5.13.3, S:P251S, Scotland/England/Ireland, from #1684
EK.4	Alias of XBB.1.5.13.4, S:Q675K, USA/France
XBB.1.5.14	C2695T, Europe/US
EL.1	Alias of XBB.1.5.14.1, S:Q675H, Europe, from #1631
XBB.1.5.15	G15957T, USA
FD.1	Alias of XBB.1.5.15.1, ORF7b:E3*, England/Canada
FD.1.1	Alias of XBB.1.5.15.1.1, S:F456L (T22928C), Canada-QC
FD.2	Alias of XBB.1.5.15.2, S:Q146K, ORF1a:G519S, USA, from #1600
FD.2.1	Alias of XBB.1.5.15.2.1, ORF1a:D3022N, Peru
FD.3	Alias of XBB.1.5.15.3, S:A348S, T8503C, USA/Finland/Japan
FD.4	Alias of XBB.1.5.15.4, ORF1a:L4191F, USA
FD.4.1	Alias of XBB.1.5.15.4.1, ORF1a:T4355I, ORF1b:I2634F
FD.5	Alias of XBB.1.5.15.5, ORF10:A8V, Peru
FD.5.1	Alias of XBB.1.5.15.5.1, S:F456L (T22928C), S:N185D, Peru, from sars-cov-2-variants/lineage-proposals#385
XBB.1.5.16	T14766C, USA
FG.1	Alias of XBB.1.5.16.1, S:T284I, S:R403K, S:L513F, USA, from #1751
FG.2	Alias of XBB.1.5.16.2, S:D178N, USA/Europe
FG.3	Alias of XBB.1.5.16.3, S:I934V, England/Wales
XBB.1.5.17	C23635T, USA
FH.1	Alias of XBB.1.5.17.1, S:T883I, C4633T, USA
XBB.1.5.18	ORF1a:T2300I, England/Europe
XBB.1.5.19	ORF1b:R172C, USA
XBB.1.5.20	C9532T, USA
XBB.1.5.21	ORF1a:K322R, C22945T, USA
GC.1	Alias of XBB.1.5.21.1, S:T323I, Spain
GC.2	Alias of XBB.1.5.21.2, S:A352S, USA
XBB.1.5.22	ORF1a:E1498A, pre T17124C, Australia
XBB.1.5.23	ORF1a:P4220L, pre T17124C
XBB.1.5.24	C2710T, pre T17124C
GF.1	Alias of XBB.1.5.24.1, S:E748V, C19524T, from #1921
XBB.1.5.25	S:97T on T10204C branch, South Africa, from #1643
XBB.1.5.26	920T, USA, from #1688
EU.1	Alias of XBB.1.5.26.1, S:P521S, Germany/Netherlands, from #1688
EU.1.1	Alias of XBB.1.5.26.1.1, S:I410V, Germany/Netherlands, from #1688
EU.1.1.1	Alias of XBB.1.5.26.1.1.1, C21646T, Germany
EU.1.1.2	Alias of XBB.1.5.26.1.1.2, S:A1070S, Germany/Finland/Denmark/Sweden
EU.1.1.3	Alias of XBB.1.5.26.1.1.3, S:F157L, Europe, from sars-cov-2-variants/lineage-proposals#312
XBB.1.5.27	S:K478R, on T11431C branch, USA
XBB.1.5.28	S:K478R, on 17124C polytomy, USA
XBB.1.5.29	S:A348V, USA-NE
XBB.1.5.30	S:A348T, USA, from #1660
HM.1	Alias of XBB.1.5.30.1, S:N481K, Canada/Australia, from sars-cov-2-variants/lineage-proposals#59
XBB.1.5.31	T24976C, USA
XBB.1.5.32	ORF1a:T2823I, USA
XBB.1.5.33	G370A, USA
XBB.1.5.34	ORF1a:T1754I, USA
XBB.1.5.35	S:N978S, USA, from #1699
XBB.1.5.36	C9442T, USA
XBB.1.5.37	S:K1045R, Europe
XBB.1.5.38	S:I666V, ORF1a:T403I
GG.1	Alias of XBB.1.5.38.1 S:478R, Europe, from sars-cov-2-variants/lineage-proposals#48
XBB.1.5.39	ORF1a:M3684T, USA/Canada
FT.1	Alias of XBB.1.5.39.1, S:I197V, Canada, from #1745
FT.2	Alias of XBB.1.5.39.2, S:K1045N, Canada-QC/USA-NY
FT.3	Alias of XBB.1.5.39.3, S:Q52H, USA, from sars-cov-2-variants/lineage-proposals#266
FT.3.1	Alias of XBB.1.5.39.3.1, S:K478R, S:D1168H, Canada/USA, from sars-cov-2-variants/lineage-proposals#266
FT.3.1.1	Alias of XBB.1.5.39.3.1.1, S:A348S, USA, from #2140
FT.4	Alias of XBB.1.5.39.4, S:E180Q, Germany
XBB.1.5.40	S:478I, USA
XBB.1.5.41	S:V772I, S:P521T, USA, from #1941
GU.1	Alias of XBB.1.5.41.1, S:N481S, USA/Canada
XBB.1.5.42	S:E281D, Asia/USA, from #1933
GR.1	Alias of XBB.1.5.42.1, S:445S, Vietnam, from #1966
XBB.1.5.43	C18501T, pre T17124C, Singapore/Malaysia/Indonesia
XBB.1.5.44	S:K356T, S:T572I, USA, from #1907
HC.1	Alias of XBB.1.5.44.1, S:P631S, USA, from sars-cov-2-variants/lineage-proposals#106
HC.2	Alias of XBB.1.5.44.2, S:F157L, Canada, from #2202
HC.3	Alias of XBB.1.5.44.3, S:P793S, USA
HC.4	Alias of XBB.1.5.44.4, S:D1084H, ORF1a:A1352V, UK/Canada
XBB.1.5.45	S:478R, C27425T, G28079T, pre T17124C, India-GJ/MH, from #1792
XBB.1.5.46	C5770T, C15279T, Germany/France
GB.1	Alias of XBB.1.5.46.1, S:L518V, France, from #1969
GB.2	Alias of XBB.1.5.46.2, S:478R, England/China, from #1891
XBB.1.5.47	C1912T, USA/England
FZ.1	Alias of XBB.1.5.47.1, S:E583D, England/Scotland
FZ.1.1	Alias of XBB.1.5.47.1.1, S:L858I, England/Scotland
FZ.2	Alias of XBB.1.5.47.2, S:Q836R, USA
XBB.1.5.48	A24730T, USA/Canada/England
GV.1	Alias of XBB.1.5.48.1, S:478R
XBB.1.5.49	T6886C, USA
HT.1	Alias of XBB.1.5.49.1, S:148T, T4798C, Mexico
HT.2	Alias of XBB.1.5.49.2, S:T51I
XBB.1.5.50	S:621S, N:T49I, USA/Canada
XBB.1.5.51	ORF1a:D3009A, USA
XBB.1.5.52	C3589T
XBB.1.5.53	S:F140I, S:L582F, S:R403K, South Africa, from #1804
JB.1	Alias of XBB.1.5.53.1, S:N148T, South Africa
JB.1.1	Alias of XBB.1.5.53.1.1, S:K478R, South Africa
JB.2	Alias of XBB.1.5.53.2, S:K478R, South Africa/USA, from sars-cov-2-variants/lineage-proposals#209
JB.2.1	Alias of XBB.1.5.53.2.1, S:H245Y, S:E554D, South Africa, from sars-cov-2-variants/lineage-proposals#209
XBB.1.5.54	C14358T,C20016T,C29311T, Central/Eastern Europe
XBB.1.5.55	ORF1a:T3356I, USA/Canada
HP.1	Alias of XBB.1.5.55.1, N:L13F, USA/Mexico, from sars-cov-2-variants/lineage-proposals#277
HP.1.1	Alias of XBB.1.5.55.1.1, S:478R, Mexico, from sars-cov-2-variants/lineage-proposals#277
XBB.1.5.56	S:A852S, USA
XBB.1.5.57	A20379G, C28312T, pre-T17124C, probable Spike-donor of XBL, from #1973
XBB.1.5.58	S:704L, ORF1b:V1607I, ORF6:D6G, pre T17124C, Guinea, from #1860
XBB.1.5.59	S:F456L (T22928C), ORF1a:S2822P, England, from #1949
XBB.1.5.60	S:M177I, ORF1a:T2106I, S:Q146K, Netherlands/Germany
XBB.1.5.61	T11536C, USA
XBB.1.5.62	C29095T
XBB.1.5.63	C346T, Germany/Mauritius
XBB.1.5.64	G8137A, C29708T, South Korea
XBB.1.5.65	C583T, Germany
XBB.1.5.66	ORF1a:G519S, USA
XBB.1.5.67	C21691T, USA
XBB.1.5.68	S:P521T, ORF3a:L71I, C18501T, USA
HZ.1	Alias of XBB.1.5.68.1, S:K478R, 23266T, USA, from sars-cov-2-variants/lineage-proposals#514
HZ.2	Alias of XBB.1.5.68.2, ORF1a:H3580Y, USA
HZ.3	Alias of XBB.1.5.68.3, ORF1a:I3693T, USA
XBB.1.5.69	ORF1a:V2943I,C22513T, USA
XBB.1.5.70	S:L455F (G22927T), S:F456L (T22928C), ORF1a:A4068S, Brazil, from #1982
GK.1	Alias of XBB.1.5.70.1, S:S704L, Brazil, from #2025
GK.1.1	Alias of XBB.1.5.70.1.1, S:T573I, Brazil
GK.1.1.1	Alias of XBB.1.5.70.1.1.1, C28432T
GK.1.2	Alias of XBB.1.5.70.1.2, S:N185D, Brazil, from #2093
GK.1.2.1	Alias of XBB.1.5.70.1.2.1, S:A475V, ORF1a:D147G, ORF1a:D2592Y, ORF1a:T4175I, ORF1b:N1426K, Brazil/Colombia, from #2314
GK.1.3	Alias of XBB.1.5.70.1.3, ORF1a:E633A, ORF1b:D1130G, USA/Canada, from sars-cov-2-variants/lineage-proposals#179
GK.1.4	Alias of XBB.1.5.70.1.4, S:478R, S:98F, Brazil, from sars-cov-2-variants/lineage-proposals#504
GK.1.5	Alias of XBB.1.5.70.1.5, S:F186L, ORF1a:T1597I, Brazil
GK.1.6	Alias of XBB.1.5.70.1.6, ORF3a:V50I, Colombia, from sars-cov-2-variants/lineage-proposals#643
GK.1.6.1	Alias of XBB.1.5.70.1.6.1, S:A475V, ORF1a:I114V, Colombia, from sars-cov-2-variants/lineage-proposals#643
GK.1.7	Alias of XBB.1.5.70.1.7, S:F186L, T11695C, Europe
GK.1.8	Alias of XBB.1.5.70.1.8, S:E554K, S:A475V, Brazil, from sars-cov-2-variants/lineage-proposals#643
GK.1.8.1	Alias of XBB.1.5.70.1.8.1, S:K187I, S:A222P, Brazil/Paraguay, from sars-cov-2-variants/lineage-proposals#1127
GK.1.9	Alias of XBB.1.5.70.1.9, C17010T, USA
GK.1.10	Alias of XBB.1.5.70.1.10, Orf1a:I573V, Orf1a:T4129I, Orf9b:T95M, Brazil, from #2375
GK.1.10.1	Alias of XBB.1.5.70.1.10.1, S:A475V, C29668T, Brazil, from #2479
KN.1	Alias of XBB.1.5.70.1.10.1.1, S:Y200C, Brazil, from #2479
KN.1.1	Alias of XBB.1.5.70.1.10.1.1.1, S:N450D, Brazil, from #2479
GK.1.11	Alias of XBB.1.5.70.1.11, S:A475V, ORF1a:P309L, Brazil, from sars-cov-2-variants/lineage-proposals#643
GK.1.11.1	Alias of XBB.1.5.70.1.11.1, S:I68V, Brazil
GK.2	Alias of XBB.1.5.70.2, S:V511I, from sars-cov-2-variants/lineage-proposals#300
GK.2.1	Alias of XBB.1.5.70.2.1, ORF1a:L624I, ORF1a:L3641S, ORF1b:S763C
GK.2.1.1	Alias of XBB.1.5.70.2.1.1, S:P1162S, from sars-cov-2-variants/lineage-proposals#716
GK.2.2	Alias of XBB.1.5.70.2.2, S:E554D, from sars-cov-2-variants/lineage-proposals#470
GK.2.3	Alias of XBB.1.5.70.2.3, S:K356T, England, from sars-cov-2-variants/lineage-proposals#813
GK.2.4	Alias of XBB.1.5.70.2.4, S:K356T, USA-NY, from sars-cov-2-variants/lineage-proposals#823
GK.3	Alias of XBB.1.5.70.3, ORF1a:A876S, Brazil/USA/Canada
GK.3.1	Alias of XBB.1.5.70.3.1, S:A475V, USA, from sars-cov-2-variants/lineage-proposals#643
GK.3.2	Alias of XBB.1.5.70.3.2, S:T572I, USA, from #2272
GK.4	Alias of XBB.1.5.70.4, S:A475V, ORF1a:T2859I, ORF1ab:T4711I, from #2276
GK.5	Alias of XBB.1.5.70.5, S:G181V, Brazil, from sars-cov-2-variants/lineage-proposals#736
GK.5.1	Alias of XBB.1.5.70.5.1, S:E180K, from sars-cov-2-variants/lineage-proposals#736
GK.6	Alias of XBB.1.5.70.6, S:N556K, S:E583A, from sars-cov-2-variants/lineage-proposals#715
GK.7	Alias of XBB.1.5.70.7, N:D3G, from sars-cov-2-variants/lineage-proposals#907
GK.8	Alias of XBB.1.5.70.8, ORF6:E55Q, Brazil, from sars-cov-2-variants/lineage-proposals#909
GK.8.1	Alias of XBB.1.5.70.8.1, S:N185I, S:A475V, from sars-cov-2-variants/lineage-proposals#909
GK.9	Alias of XBB.1.5.70.9, S:T307S, Brazil
GK.10	Alias of XBB.1.5.70.10, S:E554G, Brazil, from sars-cov-2-variants/lineage-proposals#761
GK.11	Alias of XBB.1.5.70.11, S:T883I, Brazil
GK.12	Alias of XBB.1.5.70.12, S:T76I, S:N450D, Brazil
XBB.1.5.71	S:V511I, Spain
XBB.1.5.72	S:F456L (T22928C), ORF1a:G445S, T9823C, T10204C, South America
XBB.1.5.73	T28271C, USA/Peru
GN.1	Alias of XBB.1.5.73.1, S:F456L (T22928C), Peru/Costa Rica
GN.1.1	Alias of XBB.1.5.73.1.1, ORF1b:A1643V, Peru
GN.1.2	Alias of XBB.1.5.73.1.2, S:Q321L
GN.1.3	Alias of XBB.1.5.73.1.3, S:L455F (G22927T), from sars-cov-2-variants/lineage-proposals#816
GN.1.4	Alias of XBB.1.5.73.1.4, S:G181V, Peru, from #2349
GN.2	Alias of XBB.1.5.73.2, ORF3a:A99G, Peru
GN.3	Alias of XBB.1.5.73.3, C27143T, Peru
GN.4	Alias of XBB.1.5.73.4, ORF1a:Q3966L, Peru
GN.5	Alias of XBB.1.5.73.5, ORF1a:L1110I, ORF1a:S4135F, Peru
XBB.1.5.74	S:K462R, ORF1b:V728I, Peru, from #1998
XBB.1.5.75	C3695T, Peru/France
XBB.1.5.76	ORF1a:T3696A, Chile
XBB.1.5.77	T18732C, Colombia/USA
HR.1	Alias of XBB.1.5.77.1, S:478R, N:I292V, Costa Rica/USA, from sars-cov-2-variants/lineage-proposals#323
HR.1.1	Alias of XBB.1.5.77.1.1, S:K304N, Costa Rica, from #2372
XBB.1.5.78	ORF1a:N460D, Mexico
XBB.1.5.79	N:Q260L, Mexico/USA
XBB.1.5.80	A16812G, C21812T, USA/Romania
XBB.1.5.81	S:478R, G4657A, South Africa
XBB.1.5.82	S:K444R, Sweden/Reunion
XBB.1.5.83	A10624G, South Africa
XBB.1.5.84	S:M177I, South Africa
XBB.1.5.85	S:L176F, S:478R, Trinidad and Tobago/Hong Kong
XBB.1.5.86	ORF1a:G2868S, Brazil
HA.1	Alias of XBB.1.5.86.1, S:F456L (T22930A), Brazil/Canada
HA.2	Alias of XBB.1.5.86.2, S:P521S, Brazil
XBB.1.5.87	S:478R, ORF1a:E1633K, ORF1a:M1588K, C9763T, C20946T, pre T17124C, Indonesia
XBB.1.5.88	C2299T, South Africa
XBB.1.5.89	S:478R, S:554A, Canada/Italy/France, from sars-cov-2-variants/lineage-proposals#175
XBB.1.5.90	S:P621S, ORF1ab:S6713L, Belgium/France, from #1849
XBB.1.5.91	S:P621S, USA
XBB.1.5.92	ORF1a:T1168I, Ecuador
HQ.1	Alias of XBB.1.5.92.1, S:E554K, Ecuador, from sars-cov-2-variants/lineage-proposals#170
XBB.1.5.93	C337T, C19186T, USA, from sars-cov-2-variants/lineage-proposals#363
HD.1	Alias of XBB.1.5.93.1, S:T346I, USA/Dominican Republic, from sars-cov-2-variants/lineage-proposals#363
HD.1.1	Alias of XBB.1.5.93.1.1, S:K356T, Dominican Republic, from sars-cov-2-variants/lineage-proposals#363
XBB.1.5.94	S:Q613H, T25461C, France
XBB.1.5.95	ORF1a:A1851V
HS.1	Alias of XBB.1.5.95.1, S:478R, Mexico
HS.1.1	Alias of XBB.1.5.95.1.1, S:F456L (T22928C), USA, from #2237
XBB.1.5.96	C28603T
XBB.1.5.97	S:T941S, C7834T, New Zealand/Australia
XBB.1.5.98	S:E554K, ORF8:V32L, Ghana
XBB.1.5.99	ORF1a:V1122A, ORF1a:T2121I, Slovakia/Austria
XBB.1.5.100	S:V1122M, USA/Mexico
HY.1	Alias of XBB.1.5.100.1, S:478R, USA/Mexico, from sars-cov-2-variants/lineage-proposals#453
XBB.1.5.101	ORF7a:E3Q, C14877T, Scandinavia/Poland/Vietnam
XBB.1.5.102	C6896T, C14085T, C19488T, Brazil-Amazonas
JD.1	Alias of XBB.1.5.102.1, S:L455F (G22927T), S:F456L (T22928C), A14634G, T28282C, Brazil, from #2071
JD.1.1	Alias of XBB.1.5.102.1.1, S:A475V, Brazil/USA/Spain, from #2174
JD.1.1.1	Alias of XBB.1.5.102.1.1.1, S:Y248H, from sars-cov-2-variants/lineage-proposals#864
JD.1.1.2	Alias of XBB.1.5.102.1.1.2, S:E583D, Ireland/UK, from sars-cov-2-variants/lineage-proposals#754
JD.1.1.3	Alias of XBB.1.5.102.1.1.3, S:T470N, ORF1a:V1584M, France/Denmark, from sars-cov-2-variants/lineage-proposals#896
JD.1.1.4	Alias of XBB.1.5.102.1.1.4, S:E554G, Australia, from #2380
JD.1.1.5	Alias of XBB.1.5.102.1.1.5, S:Q677R, USA/Canada, from sars-cov-2-variants/lineage-proposals#1079
JD.1.1.6	Alias of XBB.1.5.102.1.1.6, S:M153V, Brazil
JD.1.1.7	Alias of XBB.1.5.102.1.1.7, ORF1b:R2257S
JD.1.1.8	Alias of XBB.1.5.102.1.1.8, ORF1a:N1094K, without C19185T, Brazil
KK.1	Alias of XBB.1.5.102.1.1.8.1, S:D1153H, Brazil/USA, from sars-cov-2-variants/lineage-proposals#1210
KK.2	Alias of XBB.1.5.102.1.1.8.2, S:N481K, Brazil, from sars-cov-2-variants/lineage-proposals#1277
JD.1.2	Alias of XBB.1.5.102.1.2, S:P1162S, Brazil, from sars-cov-2-variants/lineage-proposals#136
JD.1.2.1	Alias of XBB.1.5.102.1.2.1, S:E554Q, from sars-cov-2-variants/lineage-proposals#870
JD.1.2.2	Alias of XBB.1.5.102.1.2.2, S:A1078T, Brazil
JD.2	Alias of XBB.1.5.102.2, ORF1b:H2388Y, G4255A, Brazil
JD.2.1	Alias of XBB.1.5.102.2.1, S:E554K, Brazil
XBB.1.5.103	S:F456L (T22928C), S:180/184del, S:N185D, ORF1a:T1437I, ORF7b:C41W, T21357C, Argentina, from #2192
KA.1	Alias of XBB.1.5.103.1, S:E554K, Argentina/France/Spain, from sars-cov-2-variants/lineage-proposals#822
XBB.1.5.104	S:K304Q, USA, from #1798
XBB.1.5.105	S:K304N, USA/Europe
XBB.1.5.106	S:A623V, ORF1a:V28I, ORF1a:R3542H, Guatemala, from #2270
XBB.1.5.107	C24130T, Argentina/Uruguay/Bolivia
JZ.1	Alias of XBB.1.5.107.1, S:F456L (T22928C), Argentina/Brazil, from sars-cov-2-variants/lineage-proposals#224
XBB.1.5.108	S:F456L (T22930A), S:K304N , from sars-cov-2-variants/lineage-proposals#550
XBB.1.5.109	S:F456L (T22928C), ORF1a:T654A, from #2262
XBB.1.5.110	ORF1aT4129I, Mexico
XBB.1.6	USA, S:L216F, S:H146K, from #1428
XBB.1.7	USA-NY, S:V608I
XBB.1.8	Denmark, S:186insSGG, C3241T, from #1455
XBB.1.9	ORF1a:G1819S, ORF1a:T4175I, on ORF9b:I5T branch
XBB.1.9.1	S:F486P (after C11956T), Indonesia/Singapore/Malaysia/England
FL.1	Alias of XBB.1.9.1.1, S:701V, ORF1a:G993S, from #1808
FL.1.1	Alias of XBB.1.9.1.1.1, ORF1b:Q2635P, USA/Australia
FL.1.1.1	Alias of XBB.1.9.1.1.1.1, S:A688S, Australia/Mauritius
FL.1.2	Alias of XBB.1.9.1.1.2, ORF1a:T4311I, South Korea/Italy/Spain
FL.1.3	Alias of XBB.1.9.1.1.3, ORF1a:T1881I, ORF1b:M606I, South Korea
FL.1.4	Alias of XBB.1.9.1.1.4, S:478R, S:Q1208H, Vietnam, from #1985
FL.1.5	Alias of XBB.1.9.1.1.5, S:F456L (T22928C), ORF1b:K2557R, from #2036
FL.1.5.1	Alias of XBB.1.9.1.1.5.1, S:478R, from #2036
HN.1	Alias of XBB.1.9.1.1.5.1.1, S:A67S, Dominican Republic, from sars-cov-2-variants/lineage-proposals#408
HN.2	Alias of XBB.1.9.1.1.5.1.2, ORF1b:P223S, from sars-cov-2-variants/lineage-proposals#676
HN.2.1	Alias of XBB.1.9.1.1.5.1.2.1, S:Q836R, from sars-cov-2-variants/lineage-proposals#676
HN.3	Alias of XBB.1.9.1.1.5.1.3, S:S494P
HN.3.1	Alias of XBB.1.9.1.1.5.1.3.1, S:D253G, from sars-cov-2-variants/lineage-proposals#383
HN.4	Alias of XBB.1.9.1.1.5.1.4, ORF1a:T403I
HN.4.1	Alias of XBB.1.9.1.1.5.1.4.1, S:A1020S, from sars-cov-2-variants/lineage-proposals#1054
HN.4.1.1	Alias of XBB.1.9.1.1.5.1.4.1.1, S:I68T, S:L452R, S:E554K, New Zealand/Canada, from sars-cov-2-variants/lineage-proposals#1054
HN.4.2	Alias of XBB.1.9.1.1.5.1.4.2, S:Q14H, Georgia/Russia, from sars-cov-2-variants/lineage-proposals#971
HN.5	Alias of XBB.1.9.1.1.5.1.5, S:E554K, from sars-cov-2-variants/lineage-proposals#936
HN.6	Alias of XBB.1.9.1.1.5.1.6, ORF1a:D1933A
HN.7	Alias of XBB.1.9.1.1.5.1.7, C6388T, T20028C, C20115T, Europe
HN.8	Alias of XBB.1.9.1.1.5.1.8, S:ins248KRD, ORF1a:E2042D, not requiring S:494P, Haiti/USA, from #2438
FL.1.5.2	Alias of XBB.1.9.1.1.5.2, S:N481K, S:H681R, England/France/Denmark, from sars-cov-2-variants/lineage-proposals#614
KC.1	Alias of XBB.1.9.1.1.5.2.1, S:S490P, ORF1a:T4129I, ORF1a:S723F, Europe, from sars-cov-2-variants/lineage-proposals#614
KC.1.1	Alias of XBB.1.9.1.1.5.2.1.1, S:V1228L, England
FL.1.6	Alias of XBB.1.9.1.1.6, S:N481K, S:Q1208H, from sars-cov-2-variants/lineage-proposals#59
FL.1.7	Alias of XBB.1.9.1.1.7, S:478R, S:C1235F, Indonesia, from #1985
FL.1.8	Alias of XBB.1.9.1.1.8, S:K478R, S:P521T, M:I8V, Russia, from sars-cov-2-variants/lineage-proposals#1058
FL.2	Alias of XBB.1.9.1.2, T4579A
FL.2.1	Alias of XBB.1.9.1.2.1, C10228T, Germany, global
FL.2.2	Alias of XBB.1.9.1.2.2, S:T478R, Indonesia, from #1927
FL.2.2.1	Alias of XBB.1.9.1.2.2.1, S:T307I, Indonesia, from #2027
FL.2.3	Alias of XBB.1.9.1.2.3, ORF1b:K1383R, China, from #2016
FL.2.3.1	Alias of XBB.1.9.1.2.3.1, S:K356T, China
FL.2.4	Alias of XBB.1.9.1.2.4, ORF8:S67F, China
FL.2.5	Alias of XBB.1.9.1.2.5, S:Q314E, from sars-cov-2-variants/lineage-proposals#342
FL.2.6	Alias of XBB.1.9.1.2.6, S:N641K, from #2180
FL.2.7	Alias of XBB.1.9.1.2.7, ORF1a:A2618T, from sars-cov-2-variants/lineage-proposals#552
FL.2.7.1	Alias of XBB.1.9.1.2.7.1, S:K478R on ORF1a:V3718F branch, South Africa, from sars-cov-2-variants/lineage-proposals#552
FL.3	Alias of XBB.1.9.1.3, T1753C, England
FL.3.1	Alias of XBB.1.9.1.3.1, ORF1a:T2264I, England
FL.3.2	Alias of XBB.1.9.1.3.2, T8830C, England/Spain
FL.3.3	Alias of XBB.1.9.1.3.3, ORF1a:A4285V,ORF1a:V2998I,ORF1a:E772K, England
FL.3.4	Alias of XBB.1.9.1.3.4, G10642C, T26232C, England
FL.4	Alias of XBB.1.9.1.4, ORF1b:V1092F
FL.4.1	Alias of XBB.1.9.1.4.1, S:N450I
FL.4.1.1	Alias of XBB.1.9.1.4.1.1, S:K478R, ORF1a:I2286T, Indonesia/Australia, from sars-cov-2-variants/lineage-proposals#107
FL.4.2	Alias of XBB.1.9.1.4.2, ORF1a:T951I, China
FL.4.3	Alias of XBB.1.9.1.4.3, S:A766S, G7393T, Myanmar, from sars-cov-2-variants/lineage-proposals#153
FL.4.4	Alias of XBB.1.9.1.4.4, ORF1a:T1542I, T24544C, S:478T (reversion), Indonesia
FL.4.5	Alias of XBB.1.9.1.4.5, ORF8:S67F, ORF1a:D1228G, C23635T, from #2018
FL.4.6	Alias of XBB.1.9.1.4.6, T5098C, C13965T, Australia/China
FL.4.7	Alias of XBB.1.9.1.4.7, S:L452R, Singapore, from sars-cov-2-variants/lineage-proposals#92
FL.4.8	Alias of XBB.1.9.1.4.8, S:478R, Indonesia, from #2024
FL.4.9	Alias of XBB.1.9.1.4.9, S:S254P, ORF3a:D173G, from #2081
FL.4.10	Alias of XBB.1.9.1.4.10, S:V1129I, China, from #2087
FL.4.11	Alias of XBB.1.9.1.4.11, S:D1259Y, N:T334I, China/Japan，from #2074
FL.5	Alias of XBB.1.9.1.5, N:T362I
FL.5.1	Alias of XBB.1.9.1.5.1, S:M177T, from #2041
FL.6	Alias of XBB.1.9.1.6, ORF1a:I849V, Bahrain/Egypt/Oman/Austria
FL.7	Alias of XBB.1.9.1.7, S:T51I
FL.8	Alias of XBB.1.9.1.8, ORF3a:I62F, Europe
FL.9	Alias of XBB.1.9.1.9, C23707T, T29691C, England
FL.10	Alias of XBB.1.9.1.10, ORF1a:C657Y, from sars-cov-2-variants/lineage-proposals#28
FL.10.1	Alias of XBB.1.9.1.10.1, S:E554K, C4234T, 220bp deletion in ORF8, South Korea, from #2040
FL.10.2	Alias of XBB.1.9.1.10.2, S:K356T, S:T523N, Canada/USA, from #2220
FL.10.3	Alias of XBB.1.9.1.10.3, S:G181R
FL.11	Alias of XBB.1.9.1.11, ORF1a:L349F, France/French Guiana, from #1947
FL.12	Alias of XBB.1.9.1.12, ORF1a:C2210F
FL.13	Alias of XBB.1.9.1.13, G4354A
FL.13.1	Alias of XBB.1.9.1.13.1, S:A411S, ORF1a:P80S, China, from #1996
FL.13.2	Alias of XBB.1.9.1.13.2, S:K356T, China, from #2073
FL.13.2.1	Alias of XBB.1.9.1.13.2.1, S:D178H, South Korea
FL.13.3	Alias of XBB.1.9.1.13.3, T19110C
FL.13.3.1	Alias of XBB.1.9.1.13.3.1, S:E154Q, England
FL.13.4	Alias of XBB.1.9.1.13.4, S:K182E, S:F456L (T22928C), Pakistan, from sars-cov-2-variants/lineage-proposals#638
FL.13.4.1	Alias of XBB.1.9.1.13.4.1, S:Q14H, S:A484K, from sars-cov-2-variants/lineage-proposals#638
FL.13.5	Alias of XBB.1.9.1.13.5, S:F456L (T22928C), ORF1a:T1000I, ORF1a:L2527M, Chile/Argentina, from sars-cov-2-variants/lineage-proposals#692
FL.14	Alias of XBB.1.9.1.14, S:V1122M, C29311T, C22978T, Russia/Finland
FL.15	Alias of XBB.1.9.1.15, S:F456L (T22928C), ORF1a:E637K, Vietnam/China/South Korea, from #1994
FL.15.1	Alias of XBB.1.9.1.15.1, S:L455F (G22927T), ORF1a:T2007I, on ORF1a:S2185N branch, from #2293
FL.15.1.1	Alias of XBB.1.9.1.15.1.1, S:A475V, Canada/Romania/Belgium, from sars-cov-2-variants/lineage-proposals#646
KF.1	Alias of XBB.1.9.1.15.1.1.1, S:P251H, Australia/Canada, from sars-cov-2-variants/lineage-proposals#890
KF.2	Alias of XBB.1.9.1.15.1.1.2, S:E183D, England/Australia/New Zealand, from sars-cov-2-variants/lineage-proposals#1111
FL.15.2	Alias of XBB.1.9.1.15.2, S:Q14H, C1684T, China, from sars-cov-2-variants/lineage-proposals#578
FL.15.3	Alias of XBB.1.9.1.15.3, S:G181V, North America
FL.15.4	Alias of XBB.1.9.1.15.4, S:Q14H, on G6819A branch, from #2359
FL.16	Alias of XBB.1.9.1.16, S:D215V, C3511T, China, from #2001
FL.17	Alias of XBB.1.9.1.17, T3898C, C28333T
FL.17.1	Alias of XBB.1.9.1.17.1, S:N74H, South Korea
FL.17.2	Alias of XBB.1.9.1.17.2, S:L452R, ORF7a:V104L, from sars-cov-2-variants/lineage-proposals#53
FL.18	Alias of XBB.1.9.1.18, ORF1a:T2007I
FL.18.1	Alias of XBB.1.9.1.18.1, N:T166I, A27507C, from #2019
FL.18.1.1	Alias of XBB.1.9.1.18.1.1, S:Y200C, S:478R, Australia/Indonesia, from #2019
FL.19	Alias of XBB.1.9.1.19, T2377C, C17502T, T24505G, South Korea
FL.19.1	Alias of XBB.1.9.1.19.1, S:F456L (T22928C), ORF1b:A1877V, Spain/Italy/Puerto Rico, from #2138
FL.20	Alias of XBB.1.9.1.20, S:F456L (T22928C), S:Q52H, Spain, from #2072
FL.20.1	Alias of XBB.1.9.1.20.1, S:L455W, Northern Ireland/England, from #2145
FL.20.2	Alias of XBB.1.9.1.20.2, S:478R, from sars-cov-2-variants/lineage-proposals#571
FL.21	Alias of XBB.1.9.1.21, A10564T
FL.21.1	Alias of XBB.1.9.1.21.1, S:D1084N, South Korea, from #2143
FL.21.2	Alias of XBB.1.9.1.21.2, ORF1a:V1019F, ORF1a:I2873M, China, from sars-cov-2-variants/lineage-proposals#187
FL.22	Alias of XBB.1.9.1.22, ORF1b:I1416V, T24184C
FL.23	Alias of XBB.1.9.1.23, ORF1b:V1132I, Philippines
FL.23.1	Alias of XBB.1.9.1.23.1, ORF1a:A2584V, C23185T, C8311T
FL.23.2	Alias of XBB.1.9.1.23.2, S:S494P, ORF1a:P2256S, Philippines, from sars-cov-2-variants/lineage-proposals#381
FL.23.2.1	Alias of XBB.1.9.1.23.2.1, S:P521T, Philippines
FL.24	Alias of XBB.1.9.1.24, S:Q613H, S:A688V, from sars-cov-2-variants/lineage-proposals#284
FL.24.1	Alias of XBB.1.9.1.24.1, S:478R, T9139C, C24919T, Russia, from sars-cov-2-variants/lineage-proposals#789
FL.25	Alias of XBB.1.9.1.25, S:E554K, USA/England, from #2040
FL.26	Alias of XBB.1.9.1.26, C22264T
FL.26.1	Alias of XBB.1.9.1.26.1, S:493L, Sweden
FL.27	Alias of XBB.1.9.1.27, ORF1a:V3747I
FL.28	Alias of XBB.1.9.1.28, S:K478R, ORF1a:S1520F, ORF3a:R68I, Spain
FL.29	Alias of XBB.1.9.1.29, S:490S, ORF1b:I2331V, from #2030
FL.30	Alias of XBB.1.9.1.30, S:484K, Greece, from #2206
FL.30.1	Alias of XBB.1.9.1.30.1, S:A852S, Greece
FL.31	Alias of XBB.1.9.1.31, ORF1b:M657I
FL.31.1	Alias of XBB.1.9.1.31.1, S:478R, S:D80H, S:Q613H, Morocco/Europe/US/Canada, from sars-cov-2-variants/lineage-proposals#836
FL.32	Alias of XBB.1.9.1.32, S:E554Q, S:V6L, from sars-cov-2-variants/lineage-proposals#719
FL.32.1	Alias of XBB.1.9.1.32.1, S:F456L (T22928C), USA, from sars-cov-2-variants/lineage-proposals#719
FL.33	Alias of XBB.1.9.1.33, ORF1b:A1377V
FL.33.1	Alias of XBB.1.9.1.33.1, S:478R, Georgia, from sars-cov-2-variants/lineage-proposals#828
FL.34	Alias of XBB.1.9.1.34, S:D1118Y
FL.35	Alias of XBB.1.9.1.35, ORF8:S103L, South Africa
FL.35.1	Alias of XBB.1.9.1.35.1, S:478R, South Africa
FL.36	Alias of XBB.1.9.1.36, S:76I, S:190S, S:356T, S:572I, S:899S, S:1070T, England/US/Denmark, sars-cov-2-variants/lineage-proposals#805
FL.37	Alias of XBB.1.9.1.37, C547T, C29614T
FL.38	Alias of XBB.1.9.1.38, S:K478R, S:Q613H, C25482T, Russia, from sars-cov-2-variants/lineage-proposals#1001
FL.39	Alias of XBB.1.9.1.39, ORF1a:E633K, Russia
FL.39.1	Alias of XBB.1.9.1.39.1, S:K478R, S:P521S, Russia
FL.40	Alias of XBB.1.9.1.40, ORF1a:I3758V, Russia
XBB.1.9.2	S:F486P (after A27507C, A16878T), Indonesia/Singapore, from #1602
EG.1	Alias of XBB.1.9.2.1, S:Q613H on N:L219F branch, from #1664 and jmcbroome/auto-pango-designation#193
EG.1.1	Alias of XBB.1.9.2.1.1, S:V70F and ORF1a:T403I, Luxembourg/Belgium/France
EG.1.2	Alias of XBB.1.9.2.1.2, ORF7b:H42Y, mostly Austria, from #1711
EG.1.3	Alias of XBB.1.9.2.1.3, C3784T, A6613G, Europe
EG.1.4	Alias of XBB.1.9.2.1.4, ORF1a:S2500F, Europe
EG.1.4.1	Alias of XBB.1.9.2.1.4.1, S:P217L, South Korea
EG.1.5	Alias of XBB.1.9.2.1.5, S:S98F, Europe
EG.1.6	Alias of XBB.1.9.2.1.6, G26235T
EG.1.7	Alias of XBB.1.9.2.1.7, S:E156V, Europe
EG.1.8	Alias of XBB.1.9.2.1.8, S:S640F, ORF1b:D161G, ORF1b:P2321L, China
EG.2	Alias of XBB.1.9.2.2, S:478R, Indonesia
EG.2.1	Alias of XBB.1.9.2.2.1, S:F456L (T22930A), S:V327I, Indonesia
EG.2.2	Alias of XBB.1.9.2.2.2, S:K304N, Indonesia/Japan, from sars-cov-2-variants/lineage-proposals#517
EG.2.3	Alias of XBB.1.9.2.2.3, S:I742V, Indonesia/Singapore, from sars-cov-2-variants/lineage-proposals#587
EG.2.4	Alias of XBB.1.9.2.2.4, S:K356T, ORF1a:G2265D, Singapore, from sars-cov-2-variants/lineage-proposals#586
EG.2.5	Alias of XBB.1.9.2.2.4, S:Q675H, Indonesia, from sars-cov-2-variants/lineage-proposals#445
EG.3	Alias of XBB.1.9.2.3, ORF1a:L2778F on N:L219F branch
EG.4	Alias of XBB.1.9.2.4, C28651T
EG.4.1	Alias of XBB.1.9.2.4.1, S:I870V, N:A119S
EG.4.2	Alias of XBB.1.9.2.4.2, S:A623V, T14652C, China, from sars-cov-2-variants/lineage-proposals#46
EG.4.3	Alias of XBB.1.9.2.4.3, S:Q613H (G23401C)
EG.4.4	Alias of XBB.1.9.2.4.4, ORF1a:Y1465C, ORF1b:H873Y, Germany/Austria
EG.4.5	Alias of XBB.1.9.2.4.5, S:478R, Indonesia/France
EG.5	Alias of XBB.1.9.2.5, S:F456L (T22930A), ORF1a:A690V, ORF1a:A3143V, Indonesia, from #1918
EG.5.1	Alias of XBB.1.9.2.5.1, S:Q52H
EG.5.1.1	Alias of XBB.1.9.2.5.1.1, China, from #2020
HK.1	Alias of XBB.1.9.2.5.1.1.1, S:G257V, China, from sars-cov-2-variants/lineage-proposals#359
HK.1.2	Alias of XBB.1.9.2.5.1.1.1.2, S:L455F (G22927C), S:T307I, China/New Zealand , from sars-cov-2-variants/lineage-proposals#631
HK.2	Alias of XBB.1.9.2.5.1.1.2, S:Q14H, China, from sars-cov-2-variants/lineage-proposals#432
HK.2.1	Alias of XBB.1.9.2.5.1.1.2.1, S:L455F (G22927T), Singapore, from sars-cov-2-variants/lineage-proposals#537
HK.3	Alias of XBB.1.9.2.5.1.1.3, S:L455F (G22927T), China, from sars-cov-2-variants/lineage-proposals#414
HK.3.1	Alias of XBB.1.9.2.5.1.1.3.1, S:F157L, China, from #2193
HK.3.2	Alias of XBB.1.9.2.5.1.1.3.2, S:Q14K, C853T, China，from sars-cov-2-variants/lineage-proposals#730
HK.3.2.1	Alias of XBB.1.9.2.5.1.1.3.2.1, S:Q677H, Canada, from #2362
HK.3.2.2	Alias of XBB.1.9.2.5.1.1.3.2.2, ORF8:M1L, S:N185D, China/Australia, from sars-cov-2-variants/lineage-proposals#867
HK.3.3	Alias of XBB.1.9.2.5.1.1.3.3, S:S256L, N:P364L, China/Singapore, from sars-cov-2-variants/lineage-proposals#744
HK.3.4	Alias of XBB.1.9.2.5.1.1.3.4, S:P809S, from sars-cov-2-variants/lineage-proposals#764
HK.3.5	Alias of XBB.1.9.2.5.1.1.3.5, S:P174S, Singapore, from sars-cov-2-variants/lineage-proposals#865
HK.3.6	Alias of XBB.1.9.2.5.1.1.3.6, S:G181R, China, from sars-cov-2-variants/lineage-proposals#809
HK.3.7	Alias of XBB.1.9.2.5.1.1.3.7, S:V171I, Singapore/China, from sars-cov-2-variants/lineage-proposals#793
HK.3.8	Alias of XBB.1.9.2.5.1.1.3.8, S:E554K, China/Sweden, from #2377
HK.3.9	Alias of XBB.1.9.2.5.1.1.3.9, S:T732I, Australia, from sars-cov-2-variants/lineage-proposals#1092
HK.3.10	Alias of XBB.1.9.2.5.1.1.3.10, S:A1078S, from sars-cov-2-variants/lineage-proposals#1055
HK.3.11	Alias of XBB.1.9.2.5.1.1.3.11, S:F186S, China
HK.3.12	Alias of XBB.1.9.2.5.1.1.3.12, S:A688T, USA, from sars-cov-2-variants/lineage-proposals#886
HK.3.13	Alias of XBB.1.9.2.5.1.1.3.13, S:Q14R, China, from sars-cov-2-variants/lineage-proposals#601
HK.3.14	Alias of XBB.1.9.2.5.1.1.3.14, S:A475V, ORF1b:2378T, England/Australia, from sars-cov-2-variants/lineage-proposals#978
HK.4	Alias of XBB.1.9.2.5.1.1.4, S:T883I, China
HK.5	Alias of XBB.1.9.2.5.1.1.5, S:Q677H, China
HK.6	Alias of XBB.1.9.2.5.1.1.6, S:D253G, ORF1a:A1923T, on T14988C branch UK/USA, from #2184
HK.7	Alias of XBB.1.9.2.5.1.1.7, S:N148T, China
HK.8	Alias of XBB.1.9.2.5.1.1.8, S:L455F (G22927T), on C11779T branch, China, from #2230
HK.8.1	Alias of XBB.1.9.2.5.1.1.8.1, S:D1153Y, China, from #2356
HK.9	Alias of XBB.1.9.2.5.1.1.9, S:R190K, on C11779T branch, England, from sars-cov-2-variants/lineage-proposals#564
HK.11	Alias of XBB.1.9.2.5.1.1.11, S:G184S, China/England/SouthKorea, from #2255
HK.11.1	Alias of XBB.1.9.2.5.1.1.11.1, S:L455F (G22927T), from sars-cov-2-variants/lineage-proposals#537
HK.12	Alias of XBB.1.9.2.5.1.1.12, S:K356T, China/Singapore
HK.13	Alias of XBB.1.9.2.5.1.1.13, S:L455F (G22927C), China, from sars-cov-2-variants/lineage-proposals#537
HK.13.1	Alias of XBB.1.9.2.5.1.1.13.1, C13378T, A24604G
HK.13.2	Alias of XBB.1.9.2.5.1.1.13.2, S:F797L, S:D1153H, from sars-cov-2-variants/lineage-proposals#943
HK.13.2.1	Alias of XBB.1.9.2.5.1.1.13.2.1, S:T250I, N:T379I, Greece, from #2480
HK.14	Alias of XBB.1.9.2.5.1.1.14, S:L455F (G22927C), on C11779T branch, China, from sars-cov-2-variants/lineage-proposals#537
HK.15	Alias of XBB.1.9.2.5.1.1.15, S:A262T, on C11779T branch, from sars-cov-2-variants/lineage-proposals#588
HK.16	Alias of XBB.1.9.2.5.1.1.16, N:P67S, S:A684V, S:V1264L, from sars-cov-2-variants/lineage-proposals#841
HK.17	Alias of XBB.1.9.2.5.1.1.17, S:S494P, China
HK.18	Alias of XBB.1.9.2.5.1.1.18, S:L452R, from sars-cov-2-variants/lineage-proposals#800
HK.19	Alias of XBB.1.9.2.5.1.1.19, S:F157L
HK.20	Alias of XBB.1.9.2.5.1.1.20, S:L455F (G22927T), on ORF1a:P2144S branch, China, from sars-cov-2-variants/lineage-proposals#537
HK.20.1	Alias of XBB.1.9.2.5.1.1.20.1, S:G482R, from sars-cov-2-variants/lineage-proposals#537
HK.21	Alias of XBB.1.9.2.5.1.1.21, S:T470N, S:796H, from #2367
HK.22	Alias of XBB.1.9.2.5.1.1.22, S:L452Q, S:L455F (G22927T), Australia/China, from #2357
HK.23	Alias of XBB.1.9.2.5.1.1.23, ORF8:A65V
HK.23.1	Alias of XBB.1.9.2.5.1.1.23.1, S:L455F (G22927T), ORF1a:T2906N, from sars-cov-2-variants/lineage-proposals#537
HK.23.1.1	Alias of XBB.1.9.2.5.1.1.23.1.1, S:A348S, China/Canada, from sars-cov-2-variants/lineage-proposals#537
HK.24	Alias of XBB.1.9.2.5.1.1.24, S:E654K
HK.24.1	Alias of XBB.1.9.2.5.1.1.24.1, S:L455F (G22927T), Australia, from sars-cov-2-variants/lineage-proposals#537
HK.25	Alias of XBB.1.9.2.5.1.1.25, S:K356T, S:H681R, N:P365L, and 10 more nucs, Germany/Austria/France/US, from #2327 and sars-cov-2-variants/lineage-proposals#986
HK.26	Alias of XBB.1.9.2.5.1.1.26, S:L455F (G22927T), ORF3a:L52I, on 14988C branch, Finland, from sars-cov-2-variants/lineage-proposals#763
HK.26.1	Alias of XBB.1.9.2.5.1.1.26.1, S:A475V, Finland, formerly HK.3.11, from sars-cov-2-variants/lineage-proposals#763
HK.27	Alias of XBB.1.9.2.5.1.1.27, ORF1a:T1589I, China
HK.27.1	Alias of XBB.1.9.2.5.1.1.27.1, S:L455F (G22927T), China, from sars-cov-2-variants/lineage-proposals#525
HK.27.1.1	Alias of XBB.1.9.2.5.1.1.27.1.1, S:Q14H, China
HK.28	Alias of XBB.1.9.2.5.1.1.28, C19170T, China
HK.29	Alias of XBB.1.9.2.5.1.1.29, ORF1a:G2509D, North America
HK.30	Alias of XBB.1.9.2.5.1.1.30, T26609C, China
HK.31	Alias of XBB.1.9.2.5.1.1.31, ORF1a:G604S
HK.32	Alias of XBB.1.9.2.5.1.1.32, S:Q14R, ORF1a:S2193F, China, from sars-cov-2-variants/lineage-proposals#601
HK.33	Alias of XBB.1.9.2.5.1.1.33, S:L455F (G22927T) on C2644T branch, North America, from sars-cov-2-variants/lineage-proposals#537
HK.34	Alias of XBB.1.9.2.5.1.1.34, S:F186S, ORF1a:V3660M, on C2644T branch, Singapore, from sars-cov-2-variants/lineage-proposals#905
HK.34.1	Alias of XBB.1.9.2.5.1.1.34.1, S:K356T, Singapore, from sars-cov-2-variants/lineage-proposals#1048
EG.5.1.2	Alias of XBB.1.9.2.5.1.2, Japan, ORF1b:V1644I, from sars-cov-2-variants/lineage-proposals#301
EG.5.1.3	Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T, from sars-cov-2-variants/lineage-proposals#222
JG.1	Alias of XBB.1.9.2.5.1.3.1, S:T732I, France, from #2218
JG.2	Alias of XBB.1.9.2.5.1.3.2, S:G75V, Europe, from #2249
JG.3	Alias of XBB.1.9.2.5.1.3.3, S:L455F (G22927T), S:S704L, Europe, from #2231
JG.3.1	Alias of XBB.1.9.2.5.1.3.3.1, S:T307I, from sars-cov-2-variants/lineage-proposals#829
JG.3.2	Alias of XBB.1.9.2.5.1.3.3.2, S:N450D, Canada, from #2376
JG.3.3	Alias of XBB.1.9.2.5.1.3.3.3, S:A83S, Belgium, from #2363
JG.3.4	Alias of XBB.1.9.2.5.1.3.3.4, S:478R, USA, from sars-cov-2-variants/lineage-proposals#1081
JG.4	Alias of XBB.1.9.2.5.1.3.4, C1684T, Europe
EG.5.1.4	Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R, from #2117
JJ.1	Alias of XBB.1.9.2.5.1.4.1, S:L455F (G22927T), ORF3a:I47V, China/Japan, from #2208
EG.5.1.5	Alias of XBB.1.9.2.5.1.5, ORF1a:L3293I, ORF1b:T1274I, ORF1b:L2349V, Portugal
EG.5.1.6	Alias of XBB.1.9.2.5.1.6, S:F157L, ORF1a:S1857L, USA, from sars-cov-2-variants/lineage-proposals#394
HV.1	Alias of XBB.1.9.2.5.1.6.1, S:L452R, USA
HV.1.1	Alias of XBB.1.9.2.5.1.6.1.1, S:K444T, on ORF1a:T4083M branch, USA, from sars-cov-2-variants/lineage-proposals#866
HV.1.2	Alias of XBB.1.9.2.5.1.6.1.2, S:S514F, on ORF1a:T4083M branch, USA, from sars-cov-2-variants/lineage-proposals#957
HV.1.3	Alias of XBB.1.9.2.5.1.6.1.3, S:493L, USA, from sars-cov-2-variants/lineage-proposals#924
HV.1.4	Alias of XBB.1.9.2.5.1.6.1.4, S:A1078S, USA, from sars-cov-2-variants/lineage-proposals#957
HV.1.5	Alias of XBB.1.9.2.5.1.6.1.5, S:L1265F, USA/Canada, from sars-cov-2-variants/lineage-proposals#957
HV.1.6	Alias of XBB.1.9.2.5.1.6.1.6, ORF1a:T1794I, ORF1a:P2018S, Canada/USA
HV.1.6.1	Alias of XBB.1.9.2.5.1.6.1.6.1, S:S704L, Canada, from sars-cov-2-variants/lineage-proposals#957
KL.1	Alias of XBB.1.9.2.5.1.6.1.6.1.1, S:K444N, Canada, from sars-cov-2-variants/lineage-proposals#1174
KL.1.1	Alias of XBB.1.9.2.5.1.6.1.6.1.1.1, S:H1101Y, Canada
HV.1.7	Alias of XBB.1.9.2.5.1.6.1.7, S:S221L, Canada, from sars-cov-2-variants/lineage-proposals#957
HV.1.8	Alias of XBB.1.9.2.5.1.6.1.8, S:T208M, USA, from #2432
HV.1.9	Alias of XBB.1.9.2.5.1.6.1.9, S:N211I, S:T1117I, New Zealand, from sars-cov-2-variants/lineage-proposals#957
HV.1.10	Alias of XBB.1.9.2.5.1.6.1.10, S:R452W, USA, from sars-cov-2-variants/lineage-proposals#1044
HV.1.11	Alias of XBB.1.9.2.5.1.6.1.11, S:N450D, USA
HV.2	Alias of XBB.1.9.2.5.1.6.2, S:L455F (G22927T), Canada, from sars-cov-2-variants/lineage-proposals#537
EG.5.1.7	Alias of XBB.1.9.2.5.1.7, S:K278N
EG.5.1.8	Alias of XBB.1.9.2.5.1.8, S:L455F (G22927T), China, on C29762T branch, from sars-cov-2-variants/lineage-proposals#537
KB.1	Alias of XBB.1.9.2.5.1.8.1, S:E654V, China, from #2347
KB.2	Alias of XBB.1.9.2.5.1.8.2, S:R214H
KB.3	Alias of XBB.1.9.2.5.1.8.2, S:A83T, from sars-cov-2-variants/lineage-proposals#1052
KB.4	Alias of XBB.1.9.2.5.1.8.2, S:T95I, from sars-cov-2-variants/lineage-proposals#891
EG.5.1.9	Alias of XBB.1.9.2.5.1.9, S:L176F (on ORF1a:D982G branch)
EG.5.1.10	Alias of XBB.1.9.2.5.1.10, ORF1a:I3758V, Portugal/Spain
EG.5.1.11	Alias of XBB.1.9.2.5.1.11, S:K182Q, Indonesia
JR.1	Alias of XBB.1.9.2.5.1.11.1, S:478R, ORF3a:Y91C, Indonesia
JR.1.1	Alias of XBB.1.9.2.5.1.11.1.1, S:L455F (G22927C), from sars-cov-2-variants/lineage-proposals#537
JR.1.1.1	Alias of XBB.1.9.2.5.1.11.1.1.1, S:K356Q, Thailand, from sars-cov-2-variants/lineage-proposals#1015
EG.5.1.12	Alias of XBB.1.9.2.5.1.12, T26972C, C28909T
EG.5.1.13	Alias of XBB.1.9.2.5.1.13, C12439T
EG.5.1.14	Alias of XBB.1.9.2.5.1.14, C16017T, C19524T
EG.5.1.15	Alias of XBB.1.9.2.5.1.15, ORF1a:T753I
EG.5.1.16	Alias of XBB.1.9.2.5.1.16, ORF1b:A2431V, from sars-cov-2-variants/lineage-proposals#899
EG.5.1.17	Alias of XBB.1.9.2.5.1.17, S:L455F (G22927C), China, from sars-cov-2-variants/lineage-proposals#537
EG.5.1.18	Alias of XBB.1.9.2.5.1.18, ORF1a:G3002S, ORF3a:S220I
EG.5.1.19	Alias of XBB.1.9.2.5.1.19, S:L455F (G22927T), ORF1b:K1383R, ORF3a:M260K, from sars-cov-2-variants/lineage-proposals#537
EG.5.2	Alias of XBB.1.9.2.5.2, N:L161F
EG.5.2.1	Alias of XBB.1.9.2.5.2.1, S:S704L, USA, from sars-cov-2-variants/lineage-proposals#189
EG.5.2.2	Alias of XBB.1.9.2.5.2.2, ORF1b:T239I, China
EG.5.2.3	Alias of XBB.1.9.2.5.2.3, S:S704L, S:N1178D, Austria/USA, from sars-cov-2-variants/lineage-proposals#353
EG.5.2.4	Alias of XBB.1.9.2.5.2.4, S:K679R, on ORF3a:I118V branch, from sars-cov-2-variants/lineage-proposals#770
EG.6	Alias of XBB.1.9.2.6, C1684T, Israel
EG.6.1	Alias of XBB.1.9.2.6.1, S:F456L (T22928C), Israel/Japan/Canada, from #1950
EG.6.1.1	Alias of XBB.1.9.2.6.1.1, S:484K, S:L242I, from sars-cov-2-variants/lineage-proposals#546
EG.6.1.2	Alias of XBB.1.9.2.6.1.2, S:V705I, Israel, from sars-cov-2-variants/lineage-proposals#826
EG.7	Alias of XBB.1.9.2.7, S:R403K, S:L513F, ORF1a:N2531S, Germany/England, from sars-cov-2-variants/lineage-proposals#56
EG.8	Alias of XBB.1.9.2.8, ORF1a:S2303F, Europe
EG.9	Alias of XBB.1.9.2.9, S:403K, ORF1a:T1474I, ORF1b:N969S, from sars-cov-2-variants/lineage-proposals#280
EG.9.1	Alias of XBB.1.9.2.9.1, S:A344T, C13767T, from sars-cov-2-variants/lineage-proposals#57
EG.10	Alias of XBB.1.9.2.10, S:A344T, S:R403K, Germany/Austria, from sars-cov-2-variants/lineage-proposals#346
EG.10.1	Alias of XBB.1.9.2.10.1, S:S494P, S:A701V, from sars-cov-2-variants/lineage-proposals#346
EG.10.1.1	Alias of XBB.1.9.2.10.1.1, ORF1a:V2703L, ORF1a:V3683I, ORF1b:P1570S
EG.11	Alias of XBB.1.9.2.11, S:E554K, A26319G, Malaysia, from sars-cov-2-variants/lineage-proposals#523
EG.12	Alias of XBB.1.9.2.12, S:E554K, N:R195T, ORF1a:T4159I, Oman/Austria/Brunei/India
EG.13	Alias of XBB.1.9.2.13, ORF1a:K798N
EG.14	Alias of XBB.1.9.2.14, Orf1b:K1383R, from #2274
XBB.1.9.3	ORF1b:G2005S, ORF1b:G1568C, Europe, from jmcbroome/auto-pango-designation#193
GD.1	Alias of XBB.1.9.3.1, S:Y453F, Mexico/USA, from #1897
GD.2	Alias of XBB.1.9.3.2, S:L212S, Philippines
GD.3	Alias of XBB.1.9.3.3, S:F59L, Russia
XBB.1.9.4	28603T, Europe
XBB.1.9.5	ORF1a:D629E, Russia
XBB.1.9.6	S:403K, S:570T, Indonesia
XBB.1.9.7	S:486P, S:478R, ORF1a:P1018T, Indonesia
XBB.1.10	USA/Japan, S:A852V, S:R403K, pre ORF8:8*
XBB.1.11	Indonesia/Malaysia/Singapore/USA, C13968A and G16377A, from #1490
XBB.1.11.1	Indonesia/Malaysia/Singapore, S:S486P, from #1490
FP.1	Alias of XBB.1.11.1.1, A6616G, C21642T, following ORF1a:T2016I, Singapore, from #1847
FP.2	Alias of XBB.1.11.1.2, S:F186S, ORF1a:V3078I, Indonesia/Malaysia/Singapore, from sars-cov-2-variants/lineage-proposals#31
FP.2.1	Alias of XBB.1.11.1.2.1, S:478R, ORF1a:I693T, ORF1a:T951A, ORF3a:W149C, Indonesia, from #2012
FP.2.1.1	Alias of XBB.1.11.1.2.1.1, S:L452Q, USA/Austria, from sars-cov-2-variants/lineage-proposals#329
FP.2.1.2	Alias of XBB.1.11.1.2.1.2, S:P521S, Indonesia
FP.3	Alias of XBB.1.11.1.3, S:478R, Indonesia/Malaysia, from #2021
FP.4	Alias of XBB.1.11.1.4, C3241T, C2536T, Vietnam/South Korea/Japan
XBB.1.12	Spain/Sweden/Germany, S:Y453F, ORF1a:S216F, ORF1a:A2832V
XBB.1.12.1	S:Q613H, S:E1202Q, Argentina/Chile/Spain, from sars-cov-2-variants/lineage-proposals#336
XBB.1.13	S:S490P, from #1487
XBB.1.13.1	S:Q564E, S:N856K, Czechia
XBB.1.14	S:G75V, S:E554K
XBB.1.14.1	S:N148T, N:A211S, Russia
XBB.1.15	ORF1a:A540V on ORF8:G8* polytomy, Colombia, USA, Guatemala, and Mexico. Automatically inferred by https://github.com/jmcbroome/autolin.
XBB.1.15.1	S:486P, A19464G, C9803T, Brazil/Chile/USA
XBB.1.16	Defined by S:E180V, S:478R, found in India, USA, Singapore, and Europe, from #1723
XBB.1.16.1	Defined by S:T547I, from #1772
FU.1	Alias of XBB.1.16.1.1, T3802C
FU.1.1	Alias of XBB.1.16.1.1.1, S:K1266R
FU.1.1.1	Alias of XBB.1.16.1.1.1.1, S:N74S, USA
FU.2	Alias of XBB.1.16.1.2, C8692T
FU.2.1	Alias of XBB.1.16.1.2.1, S:E619Q, Vietnam
FU.3	Alias of XBB.1.16.1.3, C11665T, India-RJ
FU.3.1	Alias of XBB.1.16.1.3.1, S:G184S
FU.4	Alias of XBB.1.16.1.4, S:Y453F, T29410C, from #1832
FU.5	Alias of XBB.1.16.1.5, S:K97E, ORF1a:R542C, Bangladesh, from #2137
XBB.1.16.2	Defined by ORF3a:V13L, ORF1a:P926H, India, from #1802
GY.1	Alias of XBB.1.16.2.1, S:L84I, ORF1a:A4068S, China, from #2066
GY.1.1	Alias of XBB.1.16.2.1.1, S:L455F (G22927T), S:F456L (T22928C), China, from sars-cov-2-variants/lineage-proposals#804
GY.1.1.1	Alias of XBB.1.16.2.1.1.1, S:A475V, Thailand, from sars-cov-2-variants/lineage-proposals#804
GY.2	Alias of XBB.1.16.2.2, S:T883I
GY.2.1	Alias of XBB.1.16.2.2.1, S:S255F, South Korea
GY.3	Alias of XBB.1.16.2.3, S:M177I, Thailand
GY.4	Alias of XBB.1.16.2.4, S:N450K, C29095T, Laos, from sars-cov-2-variants/lineage-proposals#345
GY.5	Alias of XBB.1.16.2.5, G9190C
GY.6	Alias of XBB.1.16.2.6, ORF1a:V1765I, from sars-cov-2-variants/lineage-proposals#308
GY.7	Alias of XBB.1.16.2.7, ORF1a:G3617C, G5515T, Thailand/Laos
GY.8	Alias of XBB.1.16.2.8, S:F456L (T22928C), C25452T, Japan, from #2148
GY.9	Alias of XBB.1.16.2.9, S:F186S, Europe
XBB.1.16.3	Defined by A2893C, India
XBB.1.16.4	Defined by S:T678I, India, from #1903
XBB.1.16.5	Defined by T9991C,C16332T, India, from #1983
XBB.1.16.6	S:F456L (T22930A), A12397G, USA/Canada/China/Malaysia
JF.1	Alias of XBB.1.16.6.1, S:L455F (G22927T), USA, from #2207
JF.1.1	Alias of XBB.1.16.6.1.1, ORF1a:S2030L
JF.1.1.1	Alias of XBB.1.16.6.1.1.1, S:A475V, ORF1a:P2005S, Canada, from sars-cov-2-variants/lineage-proposals#643
JF.1.1.2	Alias of XBB.1.16.6.1.1.2, S:V1264L
JF.2	Alias of XBB.1.16.6.2, S:Q675H, USA/Wales, from sars-cov-2-variants/lineage-proposals#457
JF.3	Alias of XBB.1.16.6.3, S:Q14H, S:L455F (G22927T), S:S810L, USA/Australia, from sars-cov-2-variants/lineage-proposals#976
JF.4	Alias of XBB.1.16.6.4, ORF1a:S212L, ORF8:A15V
XBB.1.16.7	S:T732I after T12214C, Singapore/Japan/SouthKorea
XBB.1.16.8	S:T732I after C28531T, India/USA/China/Australia
XBB.1.16.9	S:F456L (T22930G), ORF1a:S2500F, Canada/Sweden/SouthKorea/USA
XBB.1.16.10	N:G25D, from #1984
XBB.1.16.11	S:P521T, India
XBB.1.16.12	S:Q52H, South Korea
XBB.1.16.13	ORF1a:G519S, ORF1a:G1101D, India
HF.1	Alias of XBB.1.16.13.1, S:K304N, South Korea/Japan, from #2083
HF.1.1	Alias of XBB.1.16.13.1.1, S:H1101Y, on N:A35T branch, South Korea/USA/Canada, from sars-cov-2-variants/lineage-proposals#521
HF.1.2	Alias of XBB.1.16.13.1.2, S:A688V, on ORF1a:P1158S branch, USA
XBB.1.16.14	S:L452Q, after A11782G, India/France/Canada, from sars-cov-2-variants/lineage-proposals#329
XBB.1.16.15	S:K147N, S:P521S, T10756C, T14067C, on C27513T branch, from #2092
JM.1	Alias of XBB.1.16.15.1, S:Q52H, England/Wales, from sars-cov-2-variants/lineage-proposals#569
JM.2	Alias of XBB.1.16.15.2, S:R78S, Europe/North America
XBB.1.16.16	S:Q613H, S:S412N, India-GJ/USA/Pakistan, from sars-cov-2-variants/lineage-proposals#54
XBB.1.16.17	S:E554K, mainly in NZ, from sars-cov-2-variants/lineage-proposals#354
XBB.1.16.18	ORF7a:T39I, from sars-cov-2-variants/lineage-proposals#276
XBB.1.16.19	ORF1b:V839I
XBB.1.16.20	ORF7b:S31L
XBB.1.16.21	ORF1a:V4072I
XBB.1.16.22	ORF3a:E242Q, from #1893
XBB.1.16.23	S:K304Q, India/USA/Japan/Singapore, from #2187
XBB.1.16.24	S:K182E, S:V551I, S:E554K, on A25410G branch, India, from #2223
XBB.1.16.25	ORF1a:K510E, C16611T, A29221G
XBB.1.16.26	S:L455F (G22927T), S:F456L (T22928C), China, from sars-cov-2-variants/lineage-proposals#685
XBB.1.16.27	S:F456L (T22928C), S:E554K, ORF1a:A3889T, France, from #2345
XBB.1.16.28	S:V1230A, S:Q613H, S:Q675K, Russia, from sars-cov-2-variants/lineage-proposals#1000
XBB.1.16.29	S:T883I, on C7765T branch, TrinidadTobago, from sars-cov-2-variants/lineage-proposals#524
XBB.1.16.30	S:E554Q, on C7765T branch, USA/Germany, from sars-cov-2-variants/lineage-proposals#554
XBB.1.16.31	T9004C, on C7765T branch
XBB.1.16.32	S:S490P, South Africa/USA
KJ.1	Alias of XBB.1.16.32.1, S:T573I, ORF1a:P1659L, South Africa
XBB.1.17	Defined by T27995C and ORF1a:L469F, from #1712
XBB.1.17.1	Defined by S:215H, S:S486P, from #1712
GA.1	Alias of XBB.1.17.1.1, ORF1a:G728C
GA.2	Alias of XBB.1.17.1.2, ORF3a:I179F, T6640C, Africa
GA.2.1	Alias of XBB.1.17.1.2.1, S:E554K
GA.2.1.1	Alias of XBB.1.17.1.2.1.1, S:N450D, S:K478R
GA.3	Alias of XBB.1.17.1.3, ORF1b:A186V, Ghana
GA.4	Alias of XBB.1.17.1.4, S:K356T, ORF1a:N1080D, ORF1a:S2553F, Nigeria, from sars-cov-2-variants/lineage-proposals#265
GA.4.1	Alias of XBB.1.17.1.4.1, S:K478R, S:S704L, S:E554K, USA/Qatar, from sars-cov-2-variants/lineage-proposals#661
GA.4.1.1	Alias of XBB.1.17.1.4.1.1, S:Q675H
GA.4.1.2	Alias of XBB.1.17.1.4.1.2, S:T572I, England
GA.4.1.3	Alias of XBB.1.17.1.4.1.3, S:185insLAG, S:F186D, N:K370N, ORF1a:V1339I, from sars-cov-2-variants/lineage-proposals#968
GA.4.2	Alias of XBB.1.17.1.4.2, S:K558N, S:G1124S, England/Italy
GA.4.3	Alias of XBB.1.17.1.4.3, S:F186L, S:L585F, Greece/Romania, from sars-cov-2-variants/lineage-proposals#908
GA.5	Alias of XBB.1.17.1.5, T23797C
GA.6	Alias of XBB.1.17.1.6, ORF1a:I2138V, G8785A, Ghana
GA.6.1	Alias of XBB.1.17.1.6.1, S:478R, A19767G, C29642T
GA.7	Alias of XBB.1.17.1.7, ORF1a:T1429I, Cote d'Ivoire
GA.7.1	Alias of XBB.1.17.1.7.1, S:P521S, S:N148T, S:S494P, S:Q218R, from sars-cov-2-variants/lineage-proposals#755
GA.7.2	Alias of XBB.1.17.1.7.2, S:H245Y
GA.8	Alias of XBB.1.17.1.8, C3619T, C27389T, Congo
GA.8.1	Alias of XBB.1.17.1.8.1, S:K182E, S:S494P, S:E554K, France/Belgium
GA.9	Alias of XBB.1.17.1.9, ORF3a:K67N,T7534C,C29719A
GA.10	Alias of XBB.1.17.1.10, ORF1a:V4520I, Mali
GA.10.1	Alias of XBB.1.17.1.10.1, S:L455F (G22927T), S:F456L (T22928C), S:K478R, ORF1a:A776V, ORF1a:F1214S, ORF1b:K1947R, from sars-cov-2-variants/lineage-proposals#919
XBB.1.17.2	Defined by ORF1a:A698S, Russia, from #1712
XBB.1.18	Defined by A8001G, Brazil
XBB.1.18.1	Defined by S:F486P, Brazil
FE.1	Alias of XBB.1.18.1.1, S:F456L (T22928C), Brazil/Chile
FE.1.1	Alias of XBB.1.18.1.1.1, ORF8:S67F, T4579A
FE.1.1.1	Alias of XBB.1.18.1.1.1.1, ORF1a:T999I, North America
HE.1	Alias of XBB.1.18.1.1.1.1.1, S:V622I, ORF8:A55V, USA/Puerto Rico, from #2067
HE.2	Alias of XBB.1.18.1.1.1.1.2, S:H1058Y, USA
FE.1.1.2	Alias of XBB.1.18.1.1.1.2, S:K1086R, Brazil/USA
FE.1.1.3	Alias of XBB.1.18.1.1.1.3, A24775G, on G28371T (N:G33V, ORF9b:V30L) branch, China
FE.1.1.4	Alias of XBB.1.18.1.1.1.4, A4336G, T24073C, Brazil
FE.1.1.5	Alias of XBB.1.18.1.1.1.5, S:E554K, Brazil, from sars-cov-2-variants/lineage-proposals#556
FE.1.2	Alias of XBB.1.18.1.1.2, A5488G
XBB.1.19	Defined by S:486P, A10042G, T21363C, on C541T, pre ORF8:8* branch, Pakistan, from #1680
XBB.1.19.1	Defined by S:E554K, Pakistan, from #1765
GW.1	Alias of XBB.1.19.1.1, ORF1a:D264N, N:M322V, China, from sars-cov-2-variants/lineage-proposals#157
GW.1.1	Alias of XBB.1.19.1.1.1, S:F456L (T22928C), China/Japan/Singapore, from sars-cov-2-variants/lineage-proposals#355
GW.2	Alias of XBB.1.19.1.2, S:D936G, USA
GW.3	Alias of XBB.1.19.1.3, ORF1a:S100N, ORF1a:N3537S
GW.4	Alias of XBB.1.19.1.4, ORF1a:M3280I
GW.5	Alias of XBB.1.19.1.5, S:L455F (G22927T), S:F456L (T22928C), S:K478I, Pakistan, from #2142
GW.5.1	Alias of XBB.1.19.1.5.1, ORF3a:W149C, Pakistan
GW.5.1.1	Alias of XBB.1.19.1.5.1.1, S:A475V, S:F79S, Pakistan, from #2277
KE.1	Alias of XBB.1.19.1.5.1.1.1, S:F186S, England/Wales
KE.2	Alias of XBB.1.19.1.5.1.1.2, S:S704L, UK, from sars-cov-2-variants/lineage-proposals#945
KE.3	Alias of XBB.1.19.1.5.1.1.3, ORF1a:L3641S, ORF1a:T5131I, ORF7a:M1K, UK
GW.5.2	Alias of XBB.1.19.1.5.2, N:T379I
GW.5.3	Alias of XBB.1.19.1.5.3, T20310C, C28519T, from sars-cov-2-variants/lineage-proposals#815
GW.5.3.1	Alias of XBB.1.19.1.5.3.1, S:A475V, S:G184A, from sars-cov-2-variants/lineage-proposals#815
XBB.1.19.2	Defined by S:P521S, Pakistan, from sars-cov-2-variants/lineage-proposals#233
XBB.1.20	Defined by ORF3a:A72V, ORF1a:P4312T on C541T, pre ORF8:8* branch, Malaysia
XBB.1.21	Defined by S:486A, ORF1a:K1247R, Turkey, from #1646
XBB.1.22	Defined by S:486P, on ORF9b:I5T branch, from #1704
XBB.1.22.1	Defined by S:Y200C, from #1704
FY.1	Alias of XBB.1.22.1.1, Defined by ORF1b:D1782N
FY.1.1	Alias of XBB.1.22.1.1.1, S:A83S, Malaysia/Japan
FY.1.2	Alias of XBB.1.22.1.1.2, S:T572I, ORF1b:P218L, Europe
FY.1.2.1	Alias of XBB.1.22.1.1.2.1, S:W64L, from sars-cov-2-variants/lineage-proposals#863
FY.1.2.2	Alias of XBB.1.22.1.1.2.2, S:V1129I
FY.1.2.3	Alias of XBB.1.22.1.1.2.3, S:D215H
FY.1.3	Alias of XBB.1.22.1.1.3, S:E583D, South Korea
FY.1.4	Alias of XBB.1.22.1.1.4, S:478R, S:D1084G, USA, from sars-cov-2-variants/lineage-proposals#165
FY.1.4.1	Alias of XBB.1.22.1.1.4.1, S:I569T, S:N185S, USA
FY.2	Alias of XBB.1.22.1.2, S:I197T, ORF1b:S997P, Indonesia, from #1859
FY.2.1	Alias of XBB.1.22.1.2.1, S:A684V, from #2080
FY.3	Alias of XBB.1.22.1.3, ORF1a:E750K, C23191T, China
FY.3.1	Alias of XBB.1.22.1.3.1, S:I210T, China, from #2009
FY.3.2	Alias of XBB.1.22.1.3.2, ORF1a:E3764G, China, from #2000
FY.3.3	Alias of XBB.1.22.1.3.3, ORF3a:V48F, China
FY.4	Alias of XBB.1.22.1.4, S:Y451H, A8374G, C25517T, Kenya, from #1979
FY.4.1	Alias of XBB.1.22.1.4.1, S:S494P, Kenya, from #1979
FY.4.1.1	Alias of XBB.1.22.1.4.1.1, S:S704L, from sars-cov-2-variants/lineage-proposals#302
FY.4.1.2	Alias of XBB.1.22.1.4.1.2, ORF1a:S2926F, Kenya
FY.4.2	Alias of XBB.1.22.1.4.2, ORF1a:Y2171F, ORF1b:V2287I, Kenya/USA/Japan, from sars-cov-2-variants/lineage-proposals#487
FY.5	Alias of XBB.1.22.1.5, S:478R, Indonesia, from #1965
FY.5.1	Alias of XBB.1.22.1.5.1, S:T572I, from sars-cov-2-variants/lineage-proposals#929
FY.5.1.1	Alias of XBB.1.22.1.5.1.1, S:M153I, S:F186S, S:S247N, from sars-cov-2-variants/lineage-proposals#790
FY.5.2	Alias of XBB.1.22.1.5.2, S:L176F, Indonesia, on A6019G branch, from sars-cov-2-variants/lineage-proposals#267
FY.5.3	Alias of XBB.1.22.1.5.3, S:A222V, Singapore/Japan, on A6019G branch
FY.5.4	Alias of XBB.1.22.1.5.4, S:T572I, ORF1a:D3009N, ORF1a:Y4077C on A6019G branch, from sars-cov-2-variants/lineage-proposals#929
FY.5.5	Alias of XBB.1.22.1.5.5, ORF1a:M2796I
FY.5.5.1	Alias of XBB.1.22.1.5.5.1, S:T572I, from sars-cov-2-variants/lineage-proposals#929
FY.6	Alias of XBB.1.22.1.6, ORF1a:A591V
FY.6.1	Alias of XBB.1.22.1.6.1, S:S939F, Japan
FY.6.2	Alias of XBB.1.22.1.6.2, ORF1a:A3143V, ins_S:216:SLQGN, Japan, from sars-cov-2-variants/lineage-proposals#637
FY.7	Alias of XBB.1.22.1.7, S:G769A, S:D1168E, from sars-cov-2-variants/lineage-proposals#257
FY.8	Alias of XBB.1.22.1.8, S:T572I, from sars-cov-2-variants/lineage-proposals#635
FY.8.1	Alias of XBB.1.22.1.8.1, S:478R, T4579A, from sars-cov-2-variants/lineage-proposals#1002
FY.8.1.1	Alias of XBB.1.22.1.8.1.1, S:P521Q, ORF1b:V1149L, from sars-cov-2-variants/lineage-proposals#1002
FY.9	Alias of XBB.1.22.1.9, S:Q675K, ORF1a:D220E, ORF1a:C667Y, Indonesia from #2053
XBB.1.22.2	Defined by ORF1a:L3829F, C15237T
HU.1	Alias of XBB.1.22.2.1, S:K529N, France, from #2136
HU.1.1	Alias of XBB.1.22.2.1.1, S:E471Q, S:Y28H, France/USA, from #2136
HU.2	Alias of XBB.1.22.2.2, S:T76I, ORF1a:R24H, ORF1b:A1428V, Australia/New Zealand, from sars-cov-2-variants/lineage-proposals#364
XBB.1.22.3	Defined by ORF1a:P3504L, ORF1b:H1838N, Japan
XBB.1.23	Defined by E:S68F, on ORF9b:I5T branch, South East Asia
XBB.1.24	Defined by S:F486P, on T13704C branch, South East Asia, from #1654
XBB.1.24.1	S:L518Q, Singapore
XBB.1.24.2	S:R158S, after ORF1a:K261N, N:A35T, Singapore/Malaysia
XBB.1.24.3	S:S256L, after ORF1a:K261N, Malaysia/Japan
XBB.1.25	Defined by C673T, G487T, on ORF9b:I5T branch
XBB.1.26	Defined by T10663C, on ORF9b:I5T branch, Canada
XBB.1.27	Defined by S:478R, S:A890V, Mexico/USA/India, from #1654
XBB.1.28	Defined by S:403K, Europe, from #1757
XBB.1.28.1	Defined by S:356T, Indonesia, global
FW.1	Alias of XBB.1.28.1.1, S:A701V, Indonesia, Europe
FW.1.1	Alias of XBB.1.28.1.1.1, S:N148T, UK
FW.1.1.1	Alias of XBB.1.28.1.1.1.1, S:A684T, ORF1a:S2285F, ORF1a:K3353R, UK, from sars-cov-2-variants/lineage-proposals#1242
FW.2	Alias of XBB.1.28.1.2, ORF1a:G2258C, France
FW.3	Alias of XBB.1.28.1.3, ORF1a:D2627N
XBB.1.29	Defined by ORF1a:L3829F, S:A292S, Europe
XBB.1.30	Defined by ORF1b:K2557R, South East Asia
XBB.1.31	Defined by S:453F and S:478R, Indonesia/Singapore, from #1837
XBB.1.31.1	S:E554K, Indonesia, from sars-cov-2-variants/lineage-proposals#141
XBB.1.31.2	ORF1a:A1049V, Indonesia
XBB.1.32	Defined by ORF1a:E148D, Philippines, from #1827
XBB.1.32.1	S:Y453F, ORF1a:L642F, ORF1b:L2497I, Philippines/Thailand, from #1908
XBB.1.33	Defined by S:A376Trev, on ORF1b:L1061I, A27965G, pre ORF8:8* branch, found mainly in Italy, from #1879
XBB.1.34	S:486P, S:681R, N:A50V, Uganda/Sudan, from #1621
XBB.1.34.1	S:E554K, ORF1b:P970L
XBB.1.34.2	S:K182I, ORF8:C90F, ORF1a:G989C
HB.1	Alias of XBB.1.34.2.1, S:F456L (T22928C), USA/China/Canada, from sars-cov-2-variants/lineage-proposals#217
XBB.1.35	ORF1a:V89A, Indonesia
XBB.1.36	Defined by S:S490P, found mainly in Malaysia, Indonesia and Singapore, from #1781
XBB.1.37	Defined by A5371G, Indonesia/Russia, from #1929
XBB.1.37.1	Defined by S:486P, A1846G, G7459T, T27285C, Russia/South Korea, from #1929
XBB.1.38	Defined by S:T732I, Russia
XBB.1.38.1	S:T883I, Russia
XBB.1.39	ORF1a:V2866M, Singapore/Malaysia
XBB.1.40	S:Y453F, ORF1a:G519S, ORF1a:L2609F, ORF3a:P104S, Malaysia
XBB.1.41	S:L335S, S:R403K, S:486P, possibly common in Central/West Africa, from #1997
XBB.1.41.1	S:478R, Africa, from sars-cov-2-variants/lineage-proposals#150
JC.1	Alias of XBB.1.41.1.1, S:K77R, Japan/Hawaii
JC.2	Alias of XBB.1.41.1.2, S:D339R, ORF1a:V1056L, Greece, from sars-cov-2-variants/lineage-proposals#961
JC.3	Alias of XBB.1.41.1.3, S:N703I, South Africa
JC.4	Alias of XBB.1.41.1.4, S:N148S
JC.5	Alias of XBB.1.41.1.5, ORF1a:P1220L, N:H300Y, from sars-cov-2-variants/lineage-proposals#629
JC.5.1	Alias of XBB.1.41.1.5.1, S:Q173K, USA
JC.6	Alias of XBB.1.41.1.6, S:I1227V, South Africa
XBB.1.41.2	S:S494P, USA, from sars-cov-2-variants/lineage-proposals#389
XBB.1.41.3	C17850T, C25276T, C29416G, Africa
JW.1	Alias of XBB.1.41.3.1, S:K478R, ORF1a:L397F, South Africa/DRC
JW.1.1	Alias of XBB.1.41.3.1.1, S:Q14K, South Africa
XBB.1.42	S:486P, S:Q613H, on ORF1a:T4175I branch with XBB.1.9, Indonesia/Malaysia/China, from #1954
XBB.1.42.1	S:478R, from sars-cov-2-variants/lineage-proposals#198
XBB.1.42.2	C6040T, G9049A
HL.1	Alias of XBB.1.42.2.1, S:E583D, from sars-cov-2-variants/lineage-proposals#352
HL.2	Alias of XBB.1.42.2.2, S:S929N, China
XBB.1.43	G11071A, Indonesia, from #2015
XBB.1.43.1	S:486P, ORF1a:A2621V, A20713C, from #2015
XBB.1.44	S:T747I, Russia
XBB.1.44.1	S:486P, ORF3a:S195F, Russia/China, from #2043
XBB.1.45	T21000C, USA/Singapore/Malaysia
XBB.1.45.1	S:486P, A3139G, A19137G, C28291T, USA/Portugal, from #1937
XBB.1.46	ORF1a:C1114F, Singapore/Malaysia
XBB.1.47	ORF1a:T1761I, ORF1a:C2180Y, ORF1a:I2854V, Philippines/Singapore/Japan
XBB.1.47.1	S:486P, S:A260V, S:V1122G, Japan/USA/Australia/Germany
XBB.1.48	S:L455F (G22927T), S:F456L (T22928C), C2509T, on C541T, pre ORF8:8* branch, Pakistan, from #1681
XBB.1.49	S:346S, S:486P, on ORF1b:L1061I, A27965G, pre ORF8:8* branch with XBB.1.33, Somalia, from sars-cov-2-variants/lineage-proposals#208
XBB.2	Defined by S:D253G, from #1173
XBB.2.1	Defined by S:N764R (C23853G), two step mutation on top of C23854A (S:N764K defining of all Omicrons)
XBB.2.2	Defined by S:Q613H
XBB.2.3	Defined by S:P521S and S:S486P, India/Indonesia/Singapore/USA, from #1603 and #1535
XBB.2.3.1	S:D80Y, England/Sweden/India, from #1775
XBB.2.3.2	S:G184V, ORF1a:R2159W, India, from #1776
HH.1	Alias of XBB.2.3.2.1, ORF1a:T2977I, T20697C
HH.1.1	Alias of XBB.2.3.2.1.1, S:G181A, from sars-cov-2-variants/lineage-proposals#183
HH.2	Alias of XBB.2.3.2.2, ORF1a:D48Y
HH.2.1	Alias of XBB.2.3.2.2.1, S:K478R, England/France, from sars-cov-2-variants/lineage-proposals#236
HH.3	Alias of XBB.2.3.2.3, S:D1260Y, Japan
HH.4	Alias of XBB.2.3.2.4, S:A845S, India
HH.5	Alias of XBB.2.3.2.5, S:K147N, India, from sars-cov-2-variants/lineage-proposals#438
HH.6	Alias of XBB.2.3.2.6, S:K478R, ORF1a:D935E, India, from sars-cov-2-variants/lineage-proposals#236
HH.7	Alias of XBB.2.3.2.7, ORF1a:T1788M, India from #1962
HH.8	Alias of XBB.2.3.2.8, S:Q607R
HH.8.1	Alias of XBB.2.3.2.8.1, S:K478R, from sars-cov-2-variants/lineage-proposals#236
XBB.2.3.3	S:182N, India/USA, from #1810
GJ.1	Alias of XBB.2.3.3.1, found mainly in China and USA, from #2005
GJ.1.1	Alias of XBB.2.3.3.1.1, S:A222V, N:R319H, ORF1a:V1915I, from sars-cov-2-variants/lineage-proposals#109
GJ.1.2	Alias of XBB.2.3.3.1.2, ORF1b:V1110I, from #2059
GJ.1.2.1	Alias of XBB.2.3.3.1.2.1, S:N450D, Singapore/Thailand/South Korea/USA/Spain, from sars-cov-2-variants/lineage-proposals#446
JE.1	Alias of XBB.2.3.3.1.2.1.1, S:478R, Singapore/SouthKorea/USA, from sars-cov-2-variants/lineage-proposals#597
JE.1.1	Alias of XBB.2.3.3.1.2.1.1.1, S:Q52R, from sars-cov-2-variants/lineage-proposals#827
JE.1.1.1	Alias of XBB.2.3.3.1.2.1.1.1.1, S:V1122A, from #2390
KH.1	Alias of XBB.2.3.3.1.2.1.1.1.1.1, S:E554K, on N:L13F, ORF1a:R135S (reversion) branch, from #2390
GJ.1.2.2	Alias of XBB.2.3.3.1.2.2, S:478R, Europe/USA/Australia
GJ.1.2.3	Alias of XBB.2.3.3.1.2.3, S:T76I, Japan, on ORF1b:S997P branch
GJ.1.2.4	Alias of XBB.2.3.3.1.2.4, S:S255F, on ORF1a:H919Y branch, Japan/USA/South Korea
GJ.1.2.5	Alias of XBB.2.3.3.1.2.5, S:I834V, Singapore/South Korea/USA，on ORF1b:S997P branch, from sars-cov-2-variants/lineage-proposals#628
GJ.1.2.6	Alias of XBB.2.3.3.1.2.6, S:478R, on ORF1b:S997P branch, from sars-cov-2-variants/lineage-proposals#726
GJ.1.2.7	Alias of XBB.2.3.3.1.2.7, S:478R, T6511C, on ORF1a:H919Y branch, from sars-cov-2-variants/lineage-proposals#726
GJ.1.2.8	Alias of XBB.2.3.3.1.2.8, S:T747I, USA
GJ.2	Alias of XBB.2.3.3.2, S:I1114S, Europe
GJ.3	Alias of XBB.2.3.3.3, ORF1a:P971S, ORF1b:V2371L
GJ.4	Alias of XBB.2.3.3.4, S:M153I, from #1902
GJ.5	Alias of XBB.2.3.3.5, S:478R, A11794G, C13138T, from sars-cov-2-variants/lineage-proposals#429
GJ.5.1	Alias of XBB.2.3.3.5.1, S:S255F, ORF1a:A540V, ORF1a:A3963V, from sars-cov-2-variants/lineage-proposals#429
GJ.6	Alias of XBB.2.3.3.6, S:F456L (T22930A), M:G6S, India, from sars-cov-2-variants/lineage-proposals#675
GJ.7	Alias of XBB.2.3.3.7, S:E183K, Australia/NewZealand, from sars-cov-2-variants/lineage-proposals#439
XBB.2.3.4	S:478Q, India, from #1822
GZ.1	Alias of XBB.2.3.4.1, S:F186L, India-GJ
XBB.2.3.5	S:K478N, found mainly in USA and India, from #1846
XBB.2.3.6	N:T166I, mainly Singapore
GM.1	Alias of XBB.2.3.6.1, S:P621S, Singapore
GM.2	Alias of XBB.2.3.6.2, S:G181R, Singapore
GM.3	Alias of XBB.2.3.6.3, ORF1a:R4017K, Singapore
GM.3.1	Alias of XBB.2.3.6.3.1, S:N388K, Japan, from sars-cov-2-variants/lineage-proposals#450
XBB.2.3.7	ORF1a:T4087I
XBB.2.3.8	C2013T, T16389C, S:478R, Singapore/SouthKorea, from #1866
HG.1	Alias of XBB.2.3.8.1, S:S98F, South Korea
HG.1.1	Alias of XBB.2.3.8.1.1, S:A1190S, South Korea
HG.2	Alias of XBB.2.3.8.2, S:T259I, South Korea/USA, from sars-cov-2-variants/lineage-proposals#652
HG.3	Alias of XBB.2.3.8.3, S:S255F, South Korea
XBB.2.3.9	S:S98F, C18744T, C19200T, India
XBB.2.3.10	T5947C, India
GE.1	Alias of XBB.2.3.10.1, S:K478R, from #1866
GE.1.1	Alias of XBB.2.3.10.1.1, S:E554K, Bangladesh/Singapore, from sars-cov-2-variants/lineage-proposals#367
GE.1.2	Alias of XBB.2.3.10.1.2, S:N148T, Kenya, from sars-cov-2-variants/lineage-proposals#200
GE.1.2.1	Alias of XBB.2.3.10.1.2.1, S:478T, S:A376S, ORF7a-ORF8 possibly completely deleted, from sars-cov-2-variants/lineage-proposals#1103
KT.1	Alias of XBB.2.3.10.1.2.1.1, S:K77R, US/UK
KT.1.1	Alias of XBB.2.3.10.1.2.1.1.1, C683T, G15957A, USA
KT.1.2	Alias of XBB.2.3.10.1.2.1.1.2, ORF1b:N2328S, C583T
GE.1.2.2	Alias of XBB.2.3.10.1.2.2, S:S408N, ORF1b:A517V, ORF1b:D1899E, ORF7a-ORF8 possibly completed deleted, Kenya, from sars-cov-2-variants/lineage-proposals#1340
GE.1.3	Alias of XBB.2.3.10.1.3, S:T732I, from sars-cov-2-variants/lineage-proposals#102
GE.1.4	Alias of XBB.2.3.10.1.4, ORF1a:P3359S
GE.1.5	Alias of XBB.2.3.10.1.5, G6352A, C11653T, T16242A
GE.1.6	Alias of XBB.2.3.10.1.6, S:L118I
XBB.2.3.11	S:K478R, India, from #1866
GS.1	Alias of XBB.2.3.11.1, S:213D, C4582T, C25075T, Australia, from #2023
GS.2	Alias of XBB.2.3.11.2, S:T470N, Singapore/Brunei, from sars-cov-2-variants/lineage-proposals#93
GS.3	Alias of XBB.2.3.11.3, S:R190S, USA/UK, from sars-cov-2-variants/lineage-proposals#669
GS.4	Alias of XBB.2.3.11.4, M:A104V, ORF1a:A181T, France, from sars-cov-2-variants/lineage-proposals#668
GS.4.1	Alias of XBB.2.3.11.4.1, S:N185D, ORF3a:G172C, France, from sars-cov-2-variants/lineage-proposals#668
GS.4.1.1	Alias of XBB.2.3.11.4.1.1, S:P561S, France
GS.5	Alias of XBB.2.3.11.5, M:A104V, S:Q218H, from sars-cov-2-variants/lineage-proposals#768
GS.6	Alias of XBB.2.3.11.6, S:A845S, Wales
GS.7	Alias of XBB.2.3.11.7, ORF1a:L204I, C14925T
GS.7.1	Alias of XBB.2.3.11.7.1, S:E180Q, Tunisia
GS.8	Alias of XBB.2.3.11.8, ORF3a:I179V, Vietnam
XBB.2.3.12	S:S494P, from #2029
JU.1	Alias of XBB.2.3.12.1, S:N148T, S:Q218R, S:N450D, Georgia/Russia
XBB.2.3.13	ORF1a:T1822I, Spain
JA.1	Alias of XBB.2.3.13.1, S:F456L (T22928C), Spain/England/France, from sars-cov-2-variants/lineage-proposals#240
XBB.2.3.14	ORF1a:Q998H
XBB.2.3.15	ORF1a:I4308V, from sars-cov-2-variants/lineage-proposals#722
JS.1	Alias of XBB.2.3.15.1, S:S256T
JS.2	Alias of XBB.2.3.15.2, S:T323I, from sars-cov-2-variants/lineage-proposals#722
XBB.2.3.16	S:K478N, USA
XBB.2.3.17	S:N450D, USA
XBB.2.3.18	S:F456L (T22930A), S:N450D, S:1231A, India, from sars-cov-2-variants/lineage-proposals#738
XBB.2.3.19	S:G184V, ORF1a:P1786L, India
JY.1	Alias of XBB.2.3.19.1, S:E654K, S:K478T (rev), India, from sars-cov-2-variants/lineage-proposals#731
JY.1.1	Alias of XBB.2.3.19.1.1, S:T1117K
XBB.2.3.20	N:A267S, S:210del, Bangladesh, from sars-cov-2-variants/lineage-proposals#328
XBB.2.3.21	S:T883I, ORF1a:D3042N, 670T reversion, Japan, from sars-cov-2-variants/lineage-proposals#281
XBB.2.3.22	S:S937T, ORF8:K94T, Romania/Bulgaria
XBB.2.4	Defined by S:S486P, Spain/Denmark/Germany, from #1603 and #1518
XBB.2.5	S:Q613H, from jmcbroome/auto-pango-designation#193
XBB.2.6	Mostly Peru, C5144T, T5731A
XBB.2.6.1	S:P521S, Peru, from #1869
GH.1	Alias of XBB.2.6.1.1, ORF9b:P51Q, T6895C, T9148C, A15192C, Peru, from #1869
XBB.2.6.2	S:T19L, Peru
XBB.2.6.3	S:T883I, C25587T, Peru
XBB.2.7	ORF1a:R3662H, parent of lineage proposed in #1725
XBB.2.7.1	S:Y453F, S:K478Q, Singapore, from #1725
XBB.2.8	C6968T, Brunei
XBB.2.9	Defined by ORF1a:V2027I and S:F486P, found mainly in Russia, from #1877
XBB.2.10	S:Q52H, Latvia/Poland
XBB.2.11	C18129T
XBB.2.11.1	C4084T, C9559T, T16521C, USA
XBB.2.12	S:Q613H (G23401C), C4090T, T24194C, India
XBB.3	ORF1b:I1988V, on ORF1a:D82G branch
XBB.3.1	S:Q677R, after T1993C, India-TN/Singapore, from #1241
XBB.3.2	S:M177T
XBB.3.3	S:V1122L, after T1993C, USA
XBB.3.4	S:E990D
XBB.3.5	ORF1a:T4083M, Mozambique, from #1778
XBB.4	S:K444R, on ORF1a:D82G branch, from #1239
XBB.4.1	England/Austria, S:L5F, S:T470N
XBB.5	S:A653V, after G5518A, on ORF1a:D82G branch, India-TN, Singapore, Australia
XBB.6	C14178T, on ORF1a:D82G branch, USA/India/England
XBB.6.1	S:F486P, USA, from #1459
XBB.7	S:Q613H, after G5518A, on ORF1a:D82G branch, Malaysia
XBB.8	T14574C, on ORF1a:D82G branch, India/Malaysia/Brunei
XBB.8.1	S:486P, ORF1a:K634N, ORF1a:K3353R, Malaysia
XBB.8.2	S:486P, ORF1a:A2529V, Reunion/Mayotte/Mauritius, from #1995
XBB.9	N:T49I, on ORF1a:D82G branch, Philippines
XBC	Recombinant lineage of BA.2 and B.1.617.2(21I), predominantly in Philippines, from #1100
XBC.1	Mostly Philippines, South Korea, USA, Singapore, defined by S:L452M, from #1130
XBC.1.1	Mostly Australia, ORF1a:I3619T, ORF8:V114L
XBC.1.1.1	Australia, S:G476S
XBC.1.1.2	ORF7b:L32F, Australia
XBC.1.2	Philippines/Netherlands/Denmark, T11269C
XBC.1.2.1	Denmark, ORF1b:T132I
XBC.1.3	Philippines/Australia, C25614T
XBC.1.3.1	ORF1a:Q455K, ORF1a:T4174I, ORF1a:V2061A, ORF1b:S759N, Australia/New Zealand, from sars-cov-2-variants/lineage-proposals#542
KD.1	Alias of XBC.1.3.1.1, S:R346S, Australia, from sars-cov-2-variants/lineage-proposals#673
KD.2	Alias of XBC.1.3.1.2, ORF1a:M3661L, ORF1a:M3934I, Australia/New Zealand
KD.3	Alias of XBC.1.3.1.3, C10519T, C19524T, New Zealand
KD.4	Alias of XBC.1.3.1.4, ORF1a:K394R, ORF1a:L730F, ORF1a:T965I, Australia/Japan
XBC.1.4	Australia, S:G184S, from #1622
XBC.1.5	Philippines/South Korea/Japan, ORF1a:T708I after A10042C, from #1671
XBC.1.6	S:346S, S:M452R, found in Australia, from #1755
XBC.1.6.1	ORF8:P36L, Australia
GT.1	Alias of XBC.1.6.1.1, S:I105V, C28333T, Australia
XBC.1.6.2	ORF1a:D827N, Australia
XBC.1.6.3	N:A173V, Australia
HW.1	Alias of XBC.1.6.3.1, ORF1a:T1597I, ORF1a:A2123V, Australia, from sars-cov-2-variants/lineage-proposals#71
HW.1.1	Alias of XBC.1.6.3.1.1, S:N460H, T16242A, C22120T, USA/Ireland, from sars-cov-2-variants/lineage-proposals#452
HW.1.2	Alias of XBC.1.6.3.1.2, G15957A, Australia
HW.1.3	Alias of XBC.1.6.3.1.3, N:T391I, Australia
XBC.1.6.4	ORF1a:V1117I, T20286C, Australia
XBC.1.6.5	ORF7a:Q90*, C1594T, C15601T, Australia, from sars-cov-2-variants/lineage-proposals#479
XBC.1.6.6	T8707C, C26735T, Australia
JT.1	Alias of XBC.1.6.6.1, S:V445A, from sars-cov-2-variants/lineage-proposals#203
XBC.1.7	S:478R, S:444T, Philippines/Australia/Hong Kong, from sars-cov-2-variants/lineage-proposals#110
XBC.1.7.1	S:N185S, Philiippines
XBC.1.7.2	S:T299I, Australia
XBC.2	Mostly Philippines, defined by S:K97R
XBC.2.1	S:K444T, Australia, from #1538
XBD	Recombinant lineage of BA.2.75.2 and BF.5, India and world, from #1137
XBE	Recombinant lineage of BA.5.2 and BE.4.1, predominantly in USA and England, from #1246
XBF	Recombinant lineage of BA.5.2* and CJ.1, Australia, from #1259
XBF.1	Australia/England, S:S939F
XBF.1.1	England, S:P621S, from #1651
XBF.2	Australia, ORF8:V62A
XBF.3	Australia, ORF1a:V274I
XBF.4	Europe, ORF1a:H417Y, from jmcbroome/auto-pango-designation#193
XBF.5	Australia, C2455T
XBF.6	Australia, ORF1a:V3986A
XBF.7	Global, N:T379I (not on ORF1a:K120N branch)
XBF.7.1	S:T323I
XBF.8	Australia, T9931C, C12970T
XBF.8.1	Australia, S:P621S, from #1651
XBF.9	Europe, ORF1b:S1003G
XBF.10	Australia, S:M153I
XBG	Recombinant lineage of BA.2.76 and BA.5.2, predominantly in UK, from #896
XBH	Recombinant lineage of BA.2.3.17 and BA.2.75.2, predominantly in Brunei, from #1229
XBJ	Recombinant lineage of BA.2.3.20 and BA.5.2, possibly Philippines, from #1268
XBJ.1	A16011G, from #1591
XBJ.1.1	S:G485D, N:R195K, from #1591
XBJ.2	C22006T, Europe
XBJ.3	ORF1a:K2928N, Europe
XBJ.4	S:G485D, Japan/Thailand
XBK	Recombinant lineage of BA.5.2 and CJ.1, Denmark/Europe, from #1418
XBK.1	S:P1162S, from #1551 and jmcbroome/auto-pango-designation#193
XBL	Recombinant lineage of XBB.1.5.57-BA.2.75* (short segment from ~1k-~5k)-XBB.1.5.57, Malaysia, from #1532
XBL.1	S:V635I, T2461C
XBL.2	A1393G
XBL.3	C11824T, G14400T
XBL.3.1	S:I726V, C10252T, G29702A, Singapore/South Korea/Thailand, from sars-cov-2-variants/lineage-proposals#44
XBM	Recombinant lineage of BA.2.76 and BF.3, India/USA/Canada, from #1441
XBN	Recombinant lineage of BA.2.75 and XBB.3, mainly found in USA, from #1296
XBP	Recombinant lineage of BA.2.75* and BQ.1*, predominantly in England and Canada, from #1393
XBQ	Recombinant lineage of BA.5.2 and CJ.1, defined by ORF1b:M454I, England and Canada, from #1440 and autolin
XBR	Recombinant lineage of BA.2.75* and BQ.1 (with S:R346T), England, Canada, USA, from #1637
XBS	Recombinant lineage of BA.2.75* and BQ.1 (with S:R346T), England, from #1567
XBT	Recombinant lineage of BA.5.2.34, BA.2.75, BA.5.2.34, Germany, from #1576
XBU	Recombinant lineage of BA.2.75.3, BQ.1, BA.2.75.3, from #1425
XBV	Recombinant lineage of CR.1, XBB.1, from #1460
XBW	Recombinant lineage of XBB.1.5, BQ.1.14, from #1505
XBY	Recombinant lineage of BR.2.1, XBF, from #1669
XBZ	Recombinant lineage of BA.5.2* and EF.1.3, predominantly in Denmark, Germany and Austria, from #1666
XCA	Recombinant lineage of BA.2.75* and BQ.1*, predominantly in UK, from #1752
XCB	Recombinant lineage of BF.31.1 and BQ.1.10*, predominantly in Chile, from #1668
XCC	Recombinant lineage of CH.1.1.1 and XBB.1.9.1, predominantly Pakistan, Australia, from #1876
XCD	Recombinant lineage of XBB.1* and BQ.1.1.25*, with S:R214H, S:478I, Indonesia, from #2042
XCE	Recombinant lineage of BQ.1* and FY.1 (XBB.1.22.1.1), Indonesia, South Korea, France, from sars-cov-2-variants/lineage-proposals#123
XCF	Recombinant lineage of XBB* and FE.1 (XBB.1.18.1.1), possibly South America, from sars-cov-2-variants/lineage-proposals#2
XCF.1	S:F157L, USA, from sars-cov-2-variants/lineage-proposals#274
XCF.2	S:S929I, Canada
XCF.3	S:R78M
XCG	Recombinant lineage of BA.5.2* and XBB.1, Mexico
XCH	Recombinant lineage of GK.1.3 and XBB.1.9 (or XBB.1.16), GK.1.3 Spike with ORF9b:I5T from donor, from #2173
XCH.1	S:T573I, from #2173
XCJ	Recombinant lineage of GM.2 with a little FP.1 (XBB.1.11.1.1) sandwich inserted in ORF1ab, from sars-cov-2-variants/lineage-proposals#609
XCK	Recombinant lineage of FL.1.5.1 (5' up to and including S:701) and BQ.1.2.2, from #2215
XCL	Recombinant lineage of XBB (possibly XBB.1.5.68 or FY.4) from 5' up to 12468-15754, GK.2.1 onwards, Europe, from #2227
XCM	Recombinant lineage of XBB.2.3 and DV.7.1 (breakpoint between 22017-22031), Spain/Italy, from sars-cov-2-variants/lineage-proposals#674
XCN	Recombinant lineage of FR.1.1 and EG.5.1.1 (breakpoint between 22630-22663), China (Anhui/Shanghai), from sars-cov-2-variants/lineage-proposals#842
XCP	Recombinant lineage of EG.5.1.10 and JD.1.1 (breakpoint between 14190-14633), France/Denmark/England, from sars-cov-2-variants/lineage-proposals#772
XCQ	Recombinant lineage of XBB.2.3 and XBB.1.5 (breakpoint between 23123-27431), Guatemala, from #2289
XCR	Recombinant lineage of GK.1.1.1 and FU.1.1.1 (breakpoint between 23674-24372), USA, from #2323
XCS	Recombinant lineage of GK.1.9 and XBB.1.16.25 (breakpoint between 223674-25044), USA, from #2311
XCT	Recombinant lineage of JG.4, DV.7.1, JG.4 (breakpoints at 18430-19885 and 25960-27506), Europe, from sars-cov-2-variants/lineage-proposals#811
XCT.1	S:S704L, from #2358
XCU	Recombinant lineage of XBC.1.7.1 and FL.23.2.1 (breakpoint 22329-22577), Philippines, from sars-cov-2-variants/lineage-proposals#935
XCV	Recombinant lineage of XBB.1.16.19, EG.5.1.3, XBB.1.16.19 (breakpoints 9694-11749 and 22996-27064), USA/Canada, from #2210
XCW	Recombinant lineage of XBB.2.3.20, XBB.1.16.15 (breakpoint 22996-27430), India/USA from #2260
XCY	Recombinant lineage of EG.5.1.3, GK.4 (or GK.3.1) (breakpoint 21719-22569), France, from sars-cov-2-variants/lineage-proposals#887
XCZ	Recombinant lineage of EG.5.1.1, GK.1.1 (breakpoint 18492-21718), France/Italy/England, from sars-cov-2-variants/lineage-proposals#839
XDA	Recombinant lineage of XBB.1.16, HN.5 (breakpoint 22102-22927), from sars-cov-2-variants/lineage-proposals#862
XDA.1	S:L176F, from sars-cov-2-variants/lineage-proposals#1031
XDB	Recombinant lineage of XBB.1.16.19, non-XBB.1.16/EG.5/XBB.2.3 XBB (breakpoint ~28000, depending on donor), Indonesia, from sars-cov-2-variants/lineage-proposals#969
XDC	Recombinant lineage of HK.3, XBB.1.16 (breakpoint 22996-27506), China/Singapore, from sars-cov-2-variants/lineage-proposals#902
XDD	Recombinant lineage of EG.5.1.1, JN.1, EG.5.1.1 (breakpoints at 6541-7842 and 25416-26270), USA/France/Spain, from sars-cov-2-variants/lineage-proposals#1024
XDD.1	S:S704L, from sars-cov-2-variants/lineage-proposals#1203
XDD.1.1	S:I584V, from sars-cov-2-variants/lineage-proposals#1203
XDD.1.1.1	S:R346T, from sars-cov-2-variants/lineage-proposals#1450
XDD.2	S:T307I, from sars-cov-2-variants/lineage-proposals#1176
XDD.3	S:T572I, S:F456L (T22928C), G12268A, T17574G, France/Europe
XDE	Recombinant lineage of GW.5.1 and FL.13.4 (breakpoint at 24034-24046), Pakistan, from #2352
XDF	Recombinant lineage of XBB* (with C335T) and EG.5.1.3 (breakpoint around 2335-9692), from sars-cov-2-variants/lineage-proposals#1088
XDG	Recombinant lineage of FL.37 and EG.5.2.4 (breakpoint at 6729-9693), from #2348
XDH	Recombinant lineage of BN.1.2.8 and XBB.1.9.1 (or XBB.1.22) (breakpoint between 22630-22663), Lithuania/Belarus, from sars-cov-2-variants/lineage-proposals#128
XDJ	Recombinant lineage of XBB.1.16.6 and HK.3.1 (breakpoint between 14857 and 16877), France, from sars-cov-2-variants/lineage-proposals#997
XDK	Recombinant lineage of XBB.1.16.11 (likely) and JN.1.1.1 (breakpoint between 5315 and 6182), France, from #2415
XDK.1	S:R346T, S:G213E, G11596A, from sars-cov-2-variants/lineage-proposals#1407
XDK.1.1	S:K182R, S:E213G reversion, India, from sars-cov-2-variants/lineage-proposals#1490
XDK.1.2	S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1407
XDK.2	S:K679R, T4996A, C11173T, A23598G, C27297T, from sars-cov-2-variants/lineage-proposals#1385
XDK.3	S:F456L (T22928C), ORF1a:F3397L, from sars-cov-2-variants/lineage-proposals#1511
XDK.4	C25626T
XDK.4.1	S:F456L, France/Luxembourg, from sars-cov-2-variants/lineage-proposals#1467
XDK.5	S:F456L, C22388T, Spain from #2611
XDK.6	S:F456L, S:R237K, S:Q1201K, England, from sars-cov-2-variants/lineage-proposals#1572
XDL	Recombinant lineage of EG.5.1.1 and non-EG.5 (breakpoint between 25573-29624) with S:I1114T, most with S:L455F(G22927T), China, from #2351
XDM	Recombinant lineage of XDA, GW.5, XDA (breakpoints between 22107-22926 and 24047-25838), from sars-cov-2-variants/lineage-proposals#1163
XDN	Recombinant lineage of JN.1.1 and JD.1 (breakpoint between 24379 and 24989), from #2448
XDP	Recombinant lineage of JN.1.4+T18453C and FL.15 (breakpoint between 26834 and 27809), from #2451
XDP.1	S:E1092D, after ORF1a:L397P, ORF1a:H388Y, from sars-cov-2-variants/lineage-proposals#1358
XDP.2	S:E309Q, Brazil/Canada, from sars-cov-2-variants/lineage-proposals#1432
XDP.3	S:S255F, USA
XDQ	Recombinant lineage of BA.2.86.1 and FL.15.1.1 (breakpoint between 23605 and 24377), most with T22846C, Vietnam/Japan/South Korea, from #2481
XDQ.1	S:A475V, Japan/South Korea, from #2497
XDQ.1.1	S:S60P, C1594T, Japan, from sars-cov-2-variants/lineage-proposals#1523
XDQ.2	S:N487D, Vietnam, from sars-cov-2-variants/lineage-proposals#1408
XDQ.3	S:681H, Indonesia, from sars-cov-2-variants/lineage-proposals#1508
XDR	Recombinant lineage of JD.1.1.1 and JN.1.1 (breakpoint between 11043 and 11726), Brazil, from #2477
XDR.1	S:F59S, G6077T, A14031G, C26801T, Brazil/Peru, from sars-cov-2-variants/lineage-proposals#1542
XDR.1.1	S:F456L, ORF1a:A2142V, ORF1b:A2480D, ORF8:E92K
XDR.1.2	ORF1a:L3754F, ORF1b:L1890F
XDS	Recombinant lineage of EG.5.1.3, JN.3.2.1, EG.5.1.3 (breakpoints at 8294-8392 and 26834-27506), from sars-cov-2-variants/lineage-proposals#1267
XDT	Recombinant lineage of BA.2.86.4, GK.1 (breakpoint between 23673-24378), Ireland/UK, from #2485
XDU	Recombinant lineage of BA.2.86.1, XBB.1.16  (breakpoint between 11957-12729), Japan, from #2502
XDV	Recombinant lineage of XDE, JN.1, XDE, JN.1 (breakpoints between 19327-21608, 27916-28296, 28959-29534), USA/China, from #2402
XDV.1	S:F456L (T22930A), on C11572T branch, Hong Kong
XDV.1.1	S:S60P, T4579A, T9208G, China
XDV.1.2	S:R346T, N:I292T, ORF1a:L3116F, China
XDV.1.2.1	S:K462R, ORF1a:L3829F
XDV.1.3	S:T572I
XDV.1.4	S:I1114T
XDV.1.5	S:G184S, S:K478I, China
XDV.1.5.1	ORF1a:H1141Y, ORF1a:A1473V, ORF3a:R134H, China
NB.1	Alias of XDV.1.5.1.1, S:T22N, S:F59S, ORF1a:I2709V, ORF1a:P4197S, China
XDV.1.6	S:K478T, S:A263T, ORF1a:V1783I, ORF1a:E1209D
XDV.1.7	ORF1a:D2980N, C8950T, China
XDV.1.7.1	S:T22N, S:V62F
XDV.1.8	T2551C, T9892G
XDV.1.9	ORF1a:T2197I
XDV.1.9.1	S:A435S
XDV.1.10	ORF1a:T4175I, S:G181V, China-Hubei
XDV.1.11	T4057C
XDW	Recombinant lineage of JN.2 (T1030C branch), XDA (breakpoint between 23424-23603), Japan, from sars-cov-2-variants/lineage-proposals#1471
XDY	Recombinant lineage of LB.1.2.1 and KP.3.2 (breakpoint between 22131-22599), Sweden/Spain, from sars-cov-2-variants/lineage-proposals#1559
XDZ	Recombinant lineage of JG.3 and JN.1.1.10 (breakpoint between 11043-12788), Europe/North America, from sars-cov-2-variants/lineage-proposals#1356
XEA	Recombinant lineage of JN.1.63.1 and EG.5 (breakpoint between 27057-27915), East Asia
XEB	Recombinant lineage of FL.15, JN.1.4+T18453C, FL.15 (breakpoints at 774-896 and 26834-27809), USA, from sars-cov-2-variants/lineage-proposals#1290
XEC	Recombinant lineage of KS.1.1 (JN.1.13.1.1.1) and KP.3.3 (breakpoint 21738-22599), Europe (Germany), from #2717
XEC.1	S:K182R, ORF1a:L4182F, on ORF1a:A599T branch, France/Ireland/Canada
XEC.2	ORF1a:I1367L, lacking ORF1a:A599T
XED	Recombinant lineage of JN.1.4 and LF.1.1.1 (breakpoint 19210-21652), from #2691
XEE	Recombinant lineage of KP.2.3.7 and JN.1* (breakpoint 24873-25592), from #2721
XEF	Recombinant lineage of LB.1.4 and KP.3 (breakpoint 22600-23038), from sars-cov-2-variants/lineage-proposals#1855
XEG	Recombinant lineage of JN.3.2.1, GJ.1.2, JN.3.2.1, GJ.1.2 (breakpoints: 2940-3430, 11043-12788, 28210-28957), from sars-cov-2-variants/lineage-proposals#1428
XEH	Recombinant lineage of KP.1.1.3, KP.3 (breakpoint: 22599-23039), from #2790
XEJ	Recombinant lineage of JN.1, LF.1.1.1 (breakpoint: 6574-16550), from #2786
XEK	Recombinant lineage of KP.2.3, XEC (breakpoint: 9286-15402), from #2774
XEL	Recombinant lineage of KS.1.1.2, JN.1 (breakpoint: 22929-24820), from #2751
*A.2.1	Withdrawn: Lineage with sequences predominantly from Panama
*A.8	Withdrawn: Indian lineage merged with A.9
*A.10	Withdrawn: Spanish lineage reassigned to A.5
*A.13	Withdrawn: Cote d'Ivoire lineage
*A.14	Withdrawn: Cote d'Ivoire lineage
*A.20	Withdrawn: UAE lineage
*B.1.1.2	Withdrawn: UK and Australia
*B.1.1.6	Withdrawn: USA (TX)
*B.1.1.20	Withdrawn: UK lineage
*B.1.1.32	Withdrawn: Indian lineage
*B.1.1.35	Withdrawn: UK lineage
*B.1.1.36	Withdrawn: USA
*B.1.1.60	Withdrawn: Northern Ireland lineage
*B.1.1.64	Withdrawn: UK lineage
*B.1.1.65	Withdrawn: USA lineage
*B.1.1.66	Withdrawn: South African lineage
*B.1.1.73	Withdrawn: Reassigned lineage
*B.1.1.76	Withdrawn: USA lineage
*B.1.1.78	Withdrawn: Russian lineage
*B.1.1.79	Withdrawn: Russian lineage
*B.1.1.80	Withdrawn: Bangladesh lineage
*B.1.1.81	Withdrawn: Northern Ireland lineage
*B.1.1.85	Withdrawn: USA lineage
*B.1.1.94	Withdrawn: Brazil lineage
*B.1.1.96	Withdrawn: Saudi Arabia/ Russia lineage
*B.1.1.102	Withdrawn: Latvian lineage
*B.1.1.103	Withdrawn: Bangladesh lineage
*B.1.1.104	Withdrawn: Netherlands/ Europe lineage
*B.1.1.105	Withdrawn: Turkish lineage
*B.1.1.106	Withdrawn: UK lineage
*B.1.1.108	Withdrawn: UK lineage
*B.1.1.124	Withdrawn: UK/ Switzerland lineage
*B.1.1.126	Withdrawn: USA lineage
*B.1.1.131	Withdrawn: UK lineage
*B.1.1.140	Withdrawn: Russian lineage
*B.1.1.143	Withdrawn: Brazilian lineage, merged into lineage B.1.1.28
*B.1.1.146	Withdrawn: UK lineage
*B.1.1.150	Withdrawn: UK lineage
*B.1.1.151	Withdrawn: UK lineage
*B.1.1.156	Withdrawn: South African lineage
*B.1.1.167	Withdrawn: Denmark/ E European lineage
*B.1.1.173	Withdrawn: UK lineage
*B.1.1.179	Withdrawn: Indian (split from B.1.1.32)
*B.1.1.183	Withdrawn: South Korea
*B.1.1.195	Withdrawn: UK lineage
*B.1.1.199	Withdrawn: UK (split from B.1.1.64)
*B.1.1.206	Withdrawn: South Africa (mostly from B.1.1.54)
*B.1.1.211	Withdrawn: French, swiss, UK, Belgian
*B.1.1.212	Withdrawn: Indian (split from B.1.1.32)
*B.1.1.215	Withdrawn: England with a spanish base
*B.1.1.223	Withdrawn: USA, NZ, England, one Russia
*B.1.1.233	Withdrawn: USA (WA)
*B.1.1.235	Withdrawn: merged with B.1.1.115
*B.1.1.238	Withdrawn: UK and New Zealand (split from B.1.1.7)
*B.1.1.245	Withdrawn: Northern Ireland lineage, previously B.1.1.60 (split)
*B.1.1.246	Withdrawn: Russia
*B.1.1.247	Withdrawn: Northern Europe (UK, NL, Switzerland) and Northern Africa (Egypt and Morocco), Gambia (some B.1.1.55)
*B.1.1.248	Withdrawn: Brazilian lineage reassigned B.1.1.28
*B.1.1.250	Withdrawn: UK lineage
*B.1.1.252	Withdrawn: South Africa (formerly B.1.1.66)
*B.1.1.259	Withdrawn: UK (split from B.1.1.64)
*B.1.1.260	Withdrawn: UK (split from B.1.1.64)
*B.1.1.264	Withdrawn: Wales lineage, previously part of B.1.1.30
*B.1.1.276	Withdrawn: Previously part of B.1.1.55, USA lineage
*B.1.1.278	Withdrawn: UK lineage
*B.1.1.281	Withdrawn: Indian lineage, previously part of B.1.1.32
*B.1.1.287	Withdrawn: USA lineage
*B.1.1.292	Withdrawn: UK lineage
*B.1.1.293	Withdrawn: Gambian lineage
*B.1.1.295	Withdrawn: UK/Australia lineage
*B.1.1.313	Withdrawn: English lineage
*B.1.1.314	Withdrawn: Brazilian lineage, previously part of B.1.1.33
*B.1.1.439	Withdrawn: Wales lineage, reassigned to B.1.1.29
*B.1.1.527	Withdrawn: Lineage in multiple countries, reassigned to C.38, from #150
*BA.1.11	Withdrawn: Does not have a reliable defining mutation
*BA.2.3.3	Withdrawn: Does not have a reliable defining mutation, from #524
*BA.2.36.1	Withdrawn: Redesignated as BA.2.82
*BA.2.84	Withdrawn: Redesignated as BA.2.31.1
*BA.5.1.13	Withdrawn: Defined solely by Artic v3 artefacts, from #1029
*BF.7.25	Withdrawn: Invisible to pangolin as positions C29708T is part of masked regions 1-255 and 29674-29903. Alias of B.1.1.529.5.2.1.7.25, C29708T
*BA.5.2.15	Withdrawn: Redesignated as CF.1, being a child of BA.5.2.27, B.1.1.529.5.2.15, found in USA and Mexico, from #1054
*BA.5.2.17	Withdrawn: Redesignated as BV.1, being a child of BA.5.2.20
*BQ.1.1.33	Withdrawn: Alias of B.1.1.529.5.3.1.1.1.1.1.1.33, USA lineage, child of BQ.1.1.3
*BA.5.4	Withdrawn: England, Denmark, Spain and Scotland. Sublineage of BA.5.2.1 (with G11837T (ORF1a:V3858L) (nsp6:V289L)), from #618
*B.1.3.1	Withdrawn: South Korean lineage
*B.1.3.2	Withdrawn: Argentinian lineage
*B.1.3.3	Withdrawn: Israel lineage
*B.1.3.4	Withdrawn: Israel/ UK lineage
*B.1.5	Withdrawn: Reassigned to B.1 and additional sublineages as this lineage has lost monophyletic status and split into multiple parts of the B.1 tree. Previously had a Spanish base, European lineage/ lots of Spanish sequences towards the basal end of the subtree and exports around the globe.
*B.1.5.2	Withdrawn: Reassigned B.1.190, Netherlands lineage
*B.1.5.5	Withdrawn: Reassigned B.1.225
*B.1.5.6	Withdrawn: UK lineage reassigned B.1.223
*B.1.5.11	Withdrawn: Reassigned B.1.189, USA/ Mexico lineage
*B.1.5.12	Withdrawn: Reassigned to B.1.416, Senegal/ Gambia lineage
*B.1.5.13	Withdrawn: Reassigned B.1.180, Romanian lineage
*B.1.5.15	Withdrawn: Reassigned B.1.185, USA lineage
*B.1.5.17	Withdrawn: Reassigned B.1.181, USA lineage
*B.1.5.16	Withdrawn: South African lineage, reassigned to B.1.237
*B.1.5.18	Withdrawn: Reassigned B.1.256
*B.1.5.19	Withdrawn: South African lineage reassigned to B.1.381
*B.1.5.21	Withdrawn: Reassigned B.1.418, Scottish lineage
*B.1.5.25	Withdrawn: Reassigned B.1.229
*B.1.5.26	Withdrawn: Reassigned B.1.232
*B.1.5.27	Withdrawn: USA lineage (CA), reassigned to B.1.243
*B.1.5.28	Withdrawn: Reassigned B.1.231
*B.1.5.29	Withdrawn: USA lineage (WI/ IL) reassigned to B.1.415
*B.1.5.30	Withdrawn: UK lineage
*B.1.5.31	Withdrawn: South African lineage, reassigned B.1.417
*B.1.5.32	Withdrawn: Colombian lineage, reassigned B.1.420
*B.1.5.33	Withdrawn: Split up in current tree, reassigned to B.1. UK lineage
*B.1.5.34	Withdrawn: Reassigned to B.1.222, reassigned Scottish lineage
*B.1.5.35	Withdrawn: Indian lineage reassigned B.1, lacks any structure in current tree
*B.1.5.36	Withdrawn: Indian lineage reassigned to B.1.136
*B.1.8.2	Withdrawn: Reassigned in the current tree. USA lineage (CA)
*B.1.9.6	Withdrawn: North Macedonia, Switzerland
*B.1.11	Withdrawn: UK lineage, reassigned B.1- broken up in current tree
*B.1.19	Withdrawn: USA lineage (WI), reassigned B.1- broken up in current tree
*B.1.21	Withdrawn: Split up Washington (USA), reassigned mostly to B.1.371
*B.1.25	Withdrawn: Australian lineage
*B.1.26	Withdrawn: USA/Gambia lineage
*B.1.34	Withdrawn: English lineage, reassigned B.1
*B.1.36.3	Withdrawn: Danish lineage
*B.1.36.4	Withdrawn: Netherlands lineage
*B.1.36.5	Withdrawn: Saudi Arabia lineage, reassigned to parent lineage B.1.36
*B.1.36.6	Withdrawn: Norway lineage
*B.1.36.11	Withdrawn: Netherlands lineage
*B.1.36.13	Withdrawn: Irish lineage
*B.1.36.14	Withdrawn: Danish lineage
*B.1.36.15	Withdrawn: Saudi Arabia lineage
*B.1.74	Withdrawn: Spanish lineage
*B.1.75	Withdrawn: Reassigned in the current tree. English lineage
*B.1.79	Withdrawn: UK lineage, some now reassigned to B.1.5
*B.1.80	Withdrawn: Reassigned in the current tree. Indian lineage
*B.1.82	Withdrawn: Reassigned in the current tree. UK lineage
*B.1.88	Withdrawn: Scottish lineage
*B.1.89	Withdrawn: Reassigned in the current tree. UK lineage
*B.1.90	Withdrawn: Reassigned in the current tree. Scottish lineage
*B.1.95	Withdrawn: Indian lineage
*B.1.98	Withdrawn: UK lineage
*B.1.102	Withdrawn: Reassigned in the current tree. Iceland lineage
*B.1.107	Withdrawn: Reassigned in the current tree. Danish lineage, with USA and UK sequences
*B.1.109	Withdrawn: Luxembourg lineage
*B.1.114	Withdrawn: Reassigned in the current tree. Canadian lineage
*B.1.133	Withdrawn: Reassigned in the current tree. USA lineage (WA)
*B.1.135	Withdrawn: Reassigned in the current tree. Small Portuguese lineage
*B.1.136	Withdrawn: Reassigned in the current tree. Indian lineage, split up and reassigned to B.1
*B.1.138	Withdrawn: Reassigned in the current tree. Small Australian lineage
*B.1.141	Withdrawn: Reassigned in the current tree. Scottish lineage, first wave of N439K
*B.1.144	Withdrawn: South African lineage
*B.1.150	Withdrawn: Reassigned lineage
*B.1.152	Withdrawn: English lineage
*B.1.154	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.156	Withdrawn: Reassigned in the current tree. Scottish lineage
*B.1.160.1	Withdrawn: Reassigned B.1.523 English lineage
*B.1.160.2	Withdrawn: Reassigned B.1.523 English lineage
*B.1.160.3	Withdrawn: Indonesian lineage (now B.1.470)
*B.1.160.4	Withdrawn: English lineage (now B.1.471)
*B.1.160.5	Withdrawn: Danish lineage
*B.1.160.6	Withdrawn: Danish lineage, reassigned B.1.160 lack of resolution in current tree
*B.1.177.1	Withdrawn: Denmark
*B.1.177.13	Withdrawn: now part of B.1.177.17
*B.1.177.22	Withdrawn: UK lineage
*B.1.177.79	Withdrawn: Latvian lineage. Did not have a defining mutation within the coding region. Therefore merged into B.1.177.60
*B.1.183	Withdrawn: Reassigned in the current tree. Canadian lineage
*B.1.185	Withdrawn: Reassigned in the current tree. USA lineage (previously B.1.5.15)
*B.1.186	Withdrawn: Saudi-arabian/ Indian lineage (now B.1.260)
*B.1.191	Withdrawn: Reassigned in the current tree. Previously B.1.5.21, Scottish lineage
*B.1.193	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.196	Withdrawn: USA lineage
*B.1.197	Withdrawn: Australian/ New Zealand lineage
*B.1.200	Withdrawn: Reassigned in the current tree. Previously part of B.1.98, reassigned UK lineage
*B.1.202	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.204	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.207	Withdrawn: USA lineage (TX)
*B.1.209	Withdrawn: Small Scottish lineage
*B.1.216	Withdrawn: USA lineage
*B.1.217	Withdrawn: Reassigned in the current tree. Indian lineage Reassigned from B.1.80, split this assignment
*B.1.226	Withdrawn: Reassigned in the current tree. Equatorial Guinea lineage
*B.1.228	Withdrawn: Reassigned in the current tree. USA lineage, reassigned from B.1.5.27 split
*B.1.230	Withdrawn: Reassigned in the current tree. USA lineage, reassigned from B.1.5.27 split
*B.1.244	Withdrawn: Reassigned in the current tree. Saudi Arabian lineage that previously was part of B.1.160
*B.1.246	Withdrawn: Reassigned in the current tree. Saudi Arabian lineage, previously some assigned B.1.160
*B.1.253	Withdrawn: Reassigned in the current tree. UK lineage
*B.1.255	Withdrawn: North American lineage, with other global diversity (Now all over tree)
*B.1.257	Withdrawn: Reassigned in the current tree. UK lineage
*B.1.258.1	Withdrawn: French lineage
*B.1.258.8	Withdrawn: Danish lineage
*B.1.258.13	Withdrawn: Reassigned in the current tree. Danish lineage
*B.1.259	Withdrawn: Saudi Arabia/ India lineage (now in B.1.260)
*B.1.261	Withdrawn: Saudi Arabian lineage (now in B.1.260)
*B.1.262	Withdrawn: Reassigned in the current tree. Danish lineage
*B.1.266	Withdrawn: Reassigned in the current tree. Austrian lineage
*B.1.269	Withdrawn: Reassigned in the current tree. Slovenian lineage
*B.1.271	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.272	Withdrawn: Reassigned in the current tree. France/ Australian lineage
*B.1.275	Withdrawn: France lineage
*B.1.278	Withdrawn: Reassigned in the current tree. UK/ Australia lineage, previously part of B.1.13
*B.1.283	Withdrawn: USA lineage
*B.1.286	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.288	Withdrawn: Reassigned in the current tree. Denmark lineage
*B.1.290	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.295	Withdrawn: Reassigned in the current tree. Australian lineage
*B.1.296	Withdrawn: Reassigned in the current tree. USA/ Australian lineage
*B.1.297	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.297.1	Withdrawn: Reassigned in the current tree. Canadian lineage
*B.1.299	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.300	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.303	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.307	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.312	Withdrawn: USA lineage
*B.1.317	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.322	Withdrawn: USA lineage, reassigned B.1
*B.1.327	Withdrawn: Reassigned in the current tree. Danish lineage
*B.1.331	Withdrawn: USA lineage
*B.1.333.1	Withdrawn: USA lineage (WA) (all B.1.169)
*B.1.339	Withdrawn: Reassigned in the current tree. Irish lineage
*B.1.345	Withdrawn: Reassigned in the current tree. Canadian lineage
*B.1.347	Withdrawn: Reassigned in the current tree. Canadian lineage, previously part of B.1.114 lineage
*B.1.351.4	Withdrawn: Potential contaminant lineage from mixture of B.1.351 and Delta, from #134. Sequences from Botswana, do not have E484K or N501Y but have L452R and T478K
*B.1.352	Withdrawn: Reassigned in the current tree. USA lineage (CA)
*B.1.353	Withdrawn: Reassigned in the current tree. European lineage
*B.1.364	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.365	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.368	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.373	Withdrawn: Reassigned in the current tree. Swedish lineage
*B.1.374	Withdrawn: Reassigned in the current tree. European lineage
*B.1.374.1	Withdrawn: Reassigned in the current tree. Bangladesh lineage
*B.1.376	Withdrawn: Wales lineage
*B.1.386	Withdrawn: Reassigned in the current tree. USA lineage
*B.1.392	Withdrawn: UK lineage
*B.1.394	Withdrawn: North Macedonian lineage
*B.1.410	Withdrawn: Reassigned in the current tree. Danish lineage
*B.1.412	Withdrawn: Russian lineage
*B.1.414	Withdrawn: Netherlands lineage
*B.1.419	Withdrawn: Iceland lineage
*B.1.440	Withdrawn: USA lineage (All NM, one AZ)
*B.1.447	Withdrawn: Saudi Arabian lineage
*B.1.449	Withdrawn: Saudi Arabia (mixture of B.1.260 and B.1.160)
*B.1.454	Withdrawn: India (was part of B.1.160)
*B.1.455	Withdrawn: Saudi Arabia (was part of B.1.247)
*B.1.457	Withdrawn: UK, Norway, South Korea, Denmark (mostly B.1.160)
*B.1.457.1	Withdrawn: USA (MI) plus England (was B.1.247, B.1.160)
*B.1.461	Withdrawn: India (from B.1.247)
*B.1.464	Withdrawn: India and Nepal
*B.1.472	Withdrawn: England and Denmark (was part of B.1.160)
*B.1.477	Withdrawn: England (all were B.1.275)
*B.1.481	Withdrawn: DRC and Senegal base, into Switzerland
*B.1.484	Withdrawn: France and USA (MI)
*B.1.512	Withdrawn: UK, Australia, USA
*B.1.514	Withdrawn: USA (TX) split from B.1.2
*B.1.519	Withdrawn: England, split from B.1.117
*B.1.526.1	Withdrawn: Issue 45. New York. Sublineage of B.1.526 (with spike mutations T95I and D253G) that appears to have several more unique mutations.
*B.1.526.2	Withdrawn: Issue 45. New York. Sublineage of B.1.526 (with spike mutations T95I and D253G) that appears to have several more unique mutations.
*B.1.526.3	Withdrawn: Issue 45. Belgium and Luxembourg lineage
*BA.5.2.64	Withdrawn: Reassigned BA.5.12 Switzerland lineage
*BB.1	Withdrawn: Redesignated as B.1.621.2
*AY.9.1	Withdrawn: Merged into AY.9.2 as these lineages likely form a single clade
*AY.12	Withdrawn: Reassigned to AY.122.1
*AY.39.4	Withdrawn: Reassigned AY.134. Denmark lineage, from #406
*AY.75.1	Withdrawn: Did not have a defining mutation within the coding region so was merged into AY.75
*AY.89	Withdrawn: Merged into AY.4, from #398
*AY.96	Withdrawn: Based on discussion in, from #435
*AY.97	Withdrawn: Reassigned to AY.5.5
*AY.115	Withdrawn: Merged into AY.116 as these lineages likely form a single clade
*B.1.624	Withdrawn: India lineage, from #91. Redesignated as B.1.1.526
*B.1.628	Withdrawn: Identified as a recombinant lineage and therefore renamed XB, from #189
*B.2.1	Withdrawn: Reassigned to B.40
*B.2.6	Withdrawn: Reassigned to B.35
*B.2.10	Withdrawn: Reassigned to B.41
*B.2.11	Withdrawn: Reassigned to B.36
*B.2.12	Withdrawn: Reassigned to B.30
*B.6.7	Withdrawn: USA/Texas
*B.14	Withdrawn: USA lineage
*B.48	Withdrawn: Reassigned to B.23
*B.54	Withdrawn: Distributed amongst other lineages
*B.59	Withdrawn: Originally Latvian & Ireland, no longer monophyletic
*C.15	Withdrawn: Alias of B.1.1.1.15, Denmark lineage
*E.1	Withdrawn: Reassigned B.1.416.1. French lineage within the diversity of a Senegal/ Gambia lineage
*F.1	Withdrawn: Alias of B.1.36.17.1, New Zealand lineage
*H.1	Withdrawn: Alias of B.1.1.67.1, South African lineage, split from B.1.1.10
*I.1	Withdrawn: Alias of B.1.1.217.1, Latvian lineage, split from B.1.1.25
*J.1	Withdrawn: Alias of B.1.1.250.1, Australian lineage
*HK.1.1	Withdrawn as smaller than thought (only 6 sequences have 257V and G22927T): Alias of XBB.1.9.2.5.1.1.1.1, S:L455F (G22927T), China (now considered as an HK.3+S:G257D branch being misplaced with HK.1+S:L455F)
*HK.10	Withdrawn unless lineage grows: Alias of XBB.1.9.2.5.1.1.10, S:L455F (G22927T), on C19983T branch, China (now considered as HK.3 with homoplastic C19983T)
*HK.3.11	Withdrawn, as part of 14988C sublineage of EG.5.1.1, not HK.3: Alias of XBB.1.9.2.5.1.1.3.11, S:A475V, Finland/Denmark/Sweden
*JN.1.33	Redesignated as JN.1.39.3, Alias of B.1.1.529.2.86.1.1.33, S:A67V, G2782T, C5512T, China from #2498
*KD.5	Withdrawn: Alias of XBC.1.3.1.5, S:L244F, Australia, indel artefact caused false S:L244F (#2405)
*KR.2	Redesignated as LT.1 (JN.1.1.3.1) due to lack of C9142T
*KP.2.14.1	Redesignated as KP.2.14: there's no good evidence for KP.2.14 lacking S:T22N in any sequences. Hence make KP.2.14.1 -> KP.2.14 and require S:T22N