{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":167440342,"defaultBranch":"master","name":"monocle3","ownerLogin":"cole-trapnell-lab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2019-01-24T21:26:18.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/8060918?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1715113670.0","currentOid":""},"activityList":{"items":[{"before":"9fe2be234f9cbd070eb356b271a09c469de64d6c","after":"ce2af4b9422d4537976e9ce32913b20fcc3fb0d9","ref":"refs/heads/develop","pushedAt":"2024-09-06T02:45:40.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Update version.","shortMessageHtmlLink":"Update version."}},{"before":"a2017a2c693dd7b1882a2a023b0bf7fb4991cadb","after":"9fe2be234f9cbd070eb356b271a09c469de64d6c","ref":"refs/heads/develop","pushedAt":"2024-08-27T22:54:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"maddyduran","name":"Madeleine Duran","path":"/maddyduran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17054655?s=80&v=4"},"commit":{"message":"allow for gene_group_df with one grouping in aggregate_gene_expression","shortMessageHtmlLink":"allow for gene_group_df with one grouping in aggregate_gene_expression"}},{"before":"03f05ea4550e94c6ef0586adc3c5b080f271105f","after":"a2017a2c693dd7b1882a2a023b0bf7fb4991cadb","ref":"refs/heads/develop","pushedAt":"2024-08-02T15:39:52.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ctrapnell","name":"Cole Trapnell","path":"/ctrapnell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/294681?s=80&v=4"},"commit":{"message":"Merge branch 'develop' of github.com:cole-trapnell-lab/monocle3 into develop","shortMessageHtmlLink":"Merge branch 'develop' of github.com:cole-trapnell-lab/monocle3 into …"}},{"before":"a0532b5d411b50b48dc4b14b598de934f4780072","after":"03f05ea4550e94c6ef0586adc3c5b080f271105f","ref":"refs/heads/develop","pushedAt":"2024-07-27T00:54:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Add tar version notes to save_monocle_objects() and save_transform_models().","shortMessageHtmlLink":"Add tar version notes to save_monocle_objects() and save_transform_mo…"}},{"before":"de6f4c9ef0f92e79a65b2712ff54db0f248d8d34","after":"a0532b5d411b50b48dc4b14b598de934f4780072","ref":"refs/heads/develop","pushedAt":"2024-07-17T23:36:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rfriedman22","name":"Ryan Friedman","path":"/rfriedman22","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14191132?s=80&v=4"},"commit":{"message":"Update UMI plotting to allow for Z-score based cutoff","shortMessageHtmlLink":"Update UMI plotting to allow for Z-score based cutoff"}},{"before":"dbf4b462397eb6edb6741522dbc20149d7215fa2","after":"de6f4c9ef0f92e79a65b2712ff54db0f248d8d34","ref":"refs/heads/develop","pushedAt":"2024-06-28T23:40:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Update BPCells installation instructions.","shortMessageHtmlLink":"Update BPCells installation instructions."}},{"before":"7ad829931b723a154ba8b5b9ac4e419b67cd8b2d","after":"dbf4b462397eb6edb6741522dbc20149d7215fa2","ref":"refs/heads/develop","pushedAt":"2024-06-27T23:16:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rfriedman22","name":"Ryan Friedman","path":"/rfriedman22","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14191132?s=80&v=4"},"commit":{"message":"Drawing a cutoff in plot_cells_per_sample_and_perturbation is now optional","shortMessageHtmlLink":"Drawing a cutoff in plot_cells_per_sample_and_perturbation is now opt…"}},{"before":"eed1cd674b53e862bb689397a5f70bbe723ea7a5","after":"7ad829931b723a154ba8b5b9ac4e419b67cd8b2d","ref":"refs/heads/develop","pushedAt":"2024-06-27T23:05:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rfriedman22","name":"Ryan Friedman","path":"/rfriedman22","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14191132?s=80&v=4"},"commit":{"message":"Allow plot_cells_per_sample_and_perturbation to optionally zscore counts before plotting","shortMessageHtmlLink":"Allow plot_cells_per_sample_and_perturbation to optionally zscore cou…"}},{"before":"040397b72a3e0454feb37fa3ac09f227db4f9755","after":"eed1cd674b53e862bb689397a5f70bbe723ea7a5","ref":"refs/heads/develop","pushedAt":"2024-06-19T00:26:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Fix fix_missing_cell_labels() when no cells need fixing.","shortMessageHtmlLink":"Fix fix_missing_cell_labels() when no cells need fixing."}},{"before":"8379894af382f4b3aa5220cb146057ee0e81ac65","after":"040397b72a3e0454feb37fa3ac09f227db4f9755","ref":"refs/heads/develop","pushedAt":"2024-06-14T23:38:46.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Merge branch 'develop' of https://github.com/cole-trapnell-lab/monocle3 into develop","shortMessageHtmlLink":"Merge branch 'develop' of https://github.com/cole-trapnell-lab/monocle3…"}},{"before":"b182cb5dfcbb8cfac7034c2c3ead9c08a21871a7","after":"8379894af382f4b3aa5220cb146057ee0e81ac65","ref":"refs/heads/develop","pushedAt":"2024-05-29T23:45:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rfriedman22","name":"Ryan Friedman","path":"/rfriedman22","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14191132?s=80&v=4"},"commit":{"message":"Fix tock to always convert difftime to secs. Previous implementation was misleading if the difftime was >60s","shortMessageHtmlLink":"Fix tock to always convert difftime to secs. Previous implementation …"}},{"before":"d119ecb5a7c2f678dccf258eeb5f50aeaf2b7906","after":"b182cb5dfcbb8cfac7034c2c3ead9c08a21871a7","ref":"refs/heads/develop","pushedAt":"2024-05-24T20:27:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Another regression test update for new Docker image: 1.4.18_1.","shortMessageHtmlLink":"Another regression test update for new Docker image: 1.4.18_1."}},{"before":"c8587c50b0792b2d3ff90dfb6e7562c5e7bad16a","after":"d119ecb5a7c2f678dccf258eeb5f50aeaf2b7906","ref":"refs/heads/develop","pushedAt":"2024-05-24T20:06:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Update regression tests for new Docker image: 1.4.18_1.","shortMessageHtmlLink":"Update regression tests for new Docker image: 1.4.18_1."}},{"before":"2b35b234066639901301573dfe375967014a7592","after":"c8587c50b0792b2d3ff90dfb6e7562c5e7bad16a","ref":"refs/heads/develop","pushedAt":"2024-05-24T19:35:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Update Github Actions to use Docker image v1.4.18_1.","shortMessageHtmlLink":"Update Github Actions to use Docker image v1.4.18_1."}},{"before":"7dfc3b242ae72222fe3bc33ea90f35329745f70e","after":"2b35b234066639901301573dfe375967014a7592","ref":"refs/heads/develop","pushedAt":"2024-05-24T17:22:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Update NEWS.md.","shortMessageHtmlLink":"Update NEWS.md."}},{"before":"1619e50c93b8f1d702c47853b0d1a7cf9b2853c8","after":"7dfc3b242ae72222fe3bc33ea90f35329745f70e","ref":"refs/heads/develop","pushedAt":"2024-05-24T17:04:42.000Z","pushType":"pr_merge","commitsCount":27,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Merge pull request #723 from cole-trapnell-lab/bge.develop.add_diagnostics.20240429\n\nBge.develop.add diagnostics.20240429","shortMessageHtmlLink":"Merge pull request #723 from cole-trapnell-lab/bge.develop.add_diagno…"}},{"before":"d3f1d939e44c1627419c57cec6c3cbe3fd67d7d6","after":"70585f07704c877955bd65c2df33e9d6c1951185","ref":"refs/heads/bge.develop.add_diagnostics.20240429","pushedAt":"2024-05-24T00:47:43.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Merge branch 'develop' into bge.develop.add_diagnostics.20240429","shortMessageHtmlLink":"Merge branch 'develop' into bge.develop.add_diagnostics.20240429"}},{"before":"16e629e90f98d128b2fa2fb664025766d48456f5","after":"d3f1d939e44c1627419c57cec6c3cbe3fd67d7d6","ref":"refs/heads/bge.develop.add_diagnostics.20240429","pushedAt":"2024-05-23T23:10:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Minor code formatting.","shortMessageHtmlLink":"Minor code formatting."}},{"before":"4f762607dc0dd7632221fa9e73a35a74e16f1848","after":"16e629e90f98d128b2fa2fb664025766d48456f5","ref":"refs/heads/bge.develop.add_diagnostics.20240429","pushedAt":"2024-05-23T00:29:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Fix typo.","shortMessageHtmlLink":"Fix typo."}},{"before":"5391b9b8c2c6b7565455ca26f3a98540a3c47779","after":"4f762607dc0dd7632221fa9e73a35a74e16f1848","ref":"refs/heads/bge.develop.add_diagnostics.20240429","pushedAt":"2024-05-22T23:30:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Incremental error handling progress.","shortMessageHtmlLink":"Incremental error handling progress."}},{"before":"76a7e16d16031dfcd480da13ccb0e6bf15c030c2","after":"5391b9b8c2c6b7565455ca26f3a98540a3c47779","ref":"refs/heads/bge.develop.add_diagnostics.20240429","pushedAt":"2024-05-22T18:35:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Fix github actions script.","shortMessageHtmlLink":"Fix github actions script."}},{"before":"dede8d16aef0784b9621e56b8c0d641c91bc0e17","after":"76a7e16d16031dfcd480da13ccb0e6bf15c030c2","ref":"refs/heads/bge.develop.add_diagnostics.20240429","pushedAt":"2024-05-22T18:30:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Revert github actions docker file to 1.4.5_1 for now. Additional minor corrections.","shortMessageHtmlLink":"Revert github actions docker file to 1.4.5_1 for now. Additional mino…"}},{"before":"cd434bb74e1327fdeac406d68389297eddedd64f","after":"dede8d16aef0784b9621e56b8c0d641c91bc0e17","ref":"refs/heads/bge.develop.add_diagnostics.20240429","pushedAt":"2024-05-22T17:28:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Update github actions docker image to 1.4.18_1.","shortMessageHtmlLink":"Update github actions docker image to 1.4.18_1."}},{"before":"e075de9fc3f65da8af35c26305e28e920cb43d8e","after":"cd434bb74e1327fdeac406d68389297eddedd64f","ref":"refs/heads/bge.develop.add_diagnostics.20240429","pushedAt":"2024-05-22T16:57:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Additional regression tests and strategic garbage collection.","shortMessageHtmlLink":"Additional regression tests and strategic garbage collection."}},{"before":"c52755f4e2a5d0c91536abed9fed11b08d9a636b","after":"e075de9fc3f65da8af35c26305e28e920cb43d8e","ref":"refs/heads/bge.develop.add_diagnostics.20240429","pushedAt":"2024-05-21T22:25:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Update Roxygen documentation.","shortMessageHtmlLink":"Update Roxygen documentation."}},{"before":"d4bbe95cf099ba652d55ef4c53f51bf4818518df","after":"c52755f4e2a5d0c91536abed9fed11b08d9a636b","ref":"refs/heads/bge.develop.add_diagnostics.20240429","pushedAt":"2024-05-21T21:56:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"github actions fix.","shortMessageHtmlLink":"github actions fix."}},{"before":"44329ed9316280ad45d772771fc1dd05a2bbc6bb","after":"d4bbe95cf099ba652d55ef4c53f51bf4818518df","ref":"refs/heads/bge.develop.add_diagnostics.20240429","pushedAt":"2024-05-21T21:50:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Update github actions check_on_push.yml for BPCells checksum function.","shortMessageHtmlLink":"Update github actions check_on_push.yml for BPCells checksum function."}},{"before":"4de31d27650f506cbec6826f2a38eef013e2e7c1","after":"44329ed9316280ad45d772771fc1dd05a2bbc6bb","ref":"refs/heads/bge.develop.add_diagnostics.20240429","pushedAt":"2024-05-21T20:29:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Restore matrix_class_default to 'dgCMatrix'.","shortMessageHtmlLink":"Restore matrix_class_default to 'dgCMatrix'."}},{"before":"ee55e2884ddce763cab5b72d39182af86e4e4064","after":"4de31d27650f506cbec6826f2a38eef013e2e7c1","ref":"refs/heads/bge.develop.add_diagnostics.20240429","pushedAt":"2024-05-21T20:04:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"matrix_control refinements.","shortMessageHtmlLink":"matrix_control refinements."}},{"before":"4c260a34fd61372d83283f5f6d7f9cadc60fd92b","after":"ee55e2884ddce763cab5b72d39182af86e4e4064","ref":"refs/heads/bge.develop.add_diagnostics.20240429","pushedAt":"2024-05-21T00:22:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"brgew","name":null,"path":"/brgew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11478979?s=80&v=4"},"commit":{"message":"Improve matrix_control handling.","shortMessageHtmlLink":"Improve matrix_control handling."}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0wNlQwMjo0NTo0MC4wMDAwMDBazwAAAASuebB4","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0wNlQwMjo0NTo0MC4wMDAwMDBazwAAAASuebB4","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNS0yMVQwMDoyMjoxMS4wMDAwMDBazwAAAARPS6Dv"}},"title":"Activity · cole-trapnell-lab/monocle3"}