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save_grib fails when era5land option True #11

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paolap opened this issue Sep 5, 2022 · 2 comments
Open

save_grib fails when era5land option True #11

paolap opened this issue Sep 5, 2022 · 2 comments

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@paolap
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paolap commented Sep 5, 2022

When running both era5_um and era5_wrf with eraland, fails when saving data to intermediary file with climtas.to_netcdf_throttled()

Example

era5grib um  --time 198106010000 --output erailand.grib --target="/scratch/e14/cp3790/cylc-run/alt-1981-constant-forcing/share/data/ancils/tasman/ERA/qrparm.mask"

Error

INFO:root:Time: Target (198106010000)
/g/data/hh5/public/apps/miniconda3/envs/analysis3-22.01/lib/python3.9/site-packages/mule/stashmaster.py:284: UserWarning: Ancillary files do not define the UM version number in the Fixed Length Header. No STASHmaster file loaded: Fields will not have STASH entries attached.
  warnings.warn(msg)
INFO:root:Latitudes: Target (-56.75:-22.25)
INFO:root:Longitudes: Target (130.25:194.75)
INFO:root:Creating intermediate file
Traceback (most recent call last):
  File "/g/data/hh5/public/apps/miniconda3/envs/analysis3-22.01/bin/era5grib", line 10, in <module>
    sys.exit(main())
  File "/g/data/hh5/public/apps/miniconda3/envs/analysis3-22.01/lib/python3.9/site-packages/era5grib/era5grib.py", line 341, in main
    func(**dargs)
  File "/g/data/hh5/public/apps/miniconda3/envs/analysis3-22.01/lib/python3.9/site-packages/era5grib/era5grib.py", line 238, in era5grib_um
    save_grib(ds, output, format=format)
  File "/g/data/hh5/public/apps/miniconda3/envs/analysis3-22.01/lib/python3.9/site-packages/era5grib/era5grib.py", line 55, in save_grib
    climtas.io.to_netcdf_throttled(ds, tmp_compressed)
  File "/home/581/pxp581/.local/lib/python3.9/site-packages/climtas-0.3.2+3.g0a4e8f1.dirty-py3.9.egg/climtas/io.py", line 132, in to_netcdf_throttled
  File "/g/data/hh5/public/apps/miniconda3/envs/analysis3-22.01/lib/python3.9/site-packages/numpy/lib/mixins.py", line 21, in func
    return ufunc(self, other)
TypeError: operand type(s) all returned NotImplemented from __array_ufunc__(<ufunc 'equal'>, '__call__', <COO: shape=(6483600,), dtype=float32, nnz=8, fill_value=0.0>, <function store_chunk at 0x14c6b785b160>): 'COO', 'function'

and the same happens with different environments and WRF.

While running the same with:
eragrib um/wrf --no-era5land ....
works.

@paolap
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paolap commented Sep 13, 2022

@ScottWales I can see this issue happens when writing the old_graph tasks to the new_graph with a dataset generated by xesmf.Regridder.
I'm also assuming it has something to do with the issue you flagged with them

pangeo-data/xESMF#127

However, their solution doesn't seem to work. Any idea of how to move this forward? For the time being we have put together a workaround that simply avoids using to_netcdf_throttled() when saving a UM file, as these are quite small that appears to work, but the WRF files are quite big, I haven't yet tested if just using to_netcdf() might be sufficient there.

Just generally if these repository and climtas are used by the wider ACCESS community we need to discuss as some stage who is responsible for them.

@paolap
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paolap commented Sep 19, 2022

I've apply the temporary fix bypassing to_netcdf_throttled to all save_grib calls with era5land True, so removed model argument and added era5land bool instead

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