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Integration in MicroManager

To install CLIJx-Assistant to MicroManager, download a recent MicroManager gamma nightly build, clij2-imagej, clij-legacy, clij-clearcl, clij-coremem, clijx_ and clijx-assistant. Remove the number by the end of the filename, so that they are all end with .jar. Copy the .jar files to you MicroManager installation folder /plugins/Micro-Manager/. Within this folder, please delete older versions such as clij-clearcl-0.10.0 and clij-coremem-0.6.0.

Afterwards, start MicroManger and its multi-dimensional acquisition tool. As soon as you started acquisition, execute these two menus: * *

<iframe src="images/incubator_generate_macro.mp4" width="540" height="260"></iframe> [Download video](images/incubator_generate_macro.mp4) [Image data source: Daniela Vorkel, Myers lab, CSBD / MPI CBG]

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