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multiStructure.R
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multiStructure.R
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##Quick script to write a shell file for batch runs of structure via slagerthreader.py
##adjust runs and k range as needed.
runs <- c(1:10)
krange <- c(2:8)
shell <- c()
for (i in krange){
for(j in runs){
randseed <- as.integer(runif(1,min=1,max=1000000))
command <- paste("structure"," -m ",paste("./mainparams","_k",i,sep="")," -D ",
paste(randseed)," -o ",paste("./output/k",i,"_run",j,sep="")," > ",
<<<<<<< HEAD
<<<<<<< HEAD
paste("./output/k",i,"_run",j,".log",sep=""),sep="")
shell <- append(shell,command)
}
}
shell <- append(c("#!/bin/sh"),shell)
write(shell,"structure.sh")
=======
paste("./output/k",i,"_run",j,".log",sep=""),"\n",sep="")
shell <- append(shell,command)
}
}
>>>>>>> 2bb06d81dcfb03e1525d1404c62090c12e63915a
=======
paste("./output/k",i,"_run",j,".log",sep=""),sep="")
shell <- append(shell,command)
}
}
shell <- append(c("#!/bin/sh"),shell)
>>>>>>> aeebc34d3720f86373cc41e7341b241969119a6d
write(shell,"structure.sh")