This repository contains the slides, exercise files, and solutions to the exercises for the Workflows with Snakemake presentation, presented by Brett Milash of the Center for High Performance Computing, University of Utah.
To complete these exercises, log in to your CHPC account (or an account on another SLURM cluster running Linux where snakemake and R are available) and clone the repository with the commands:
module load git; git clone https://github.com/CHPC-UofU/workflows-with-snakemake.git
That will create the "workflows-with-snakemake" directory, where you will find the exercise files and solutions.
Students in this course should have:
- a CHPC account.
- taken our Intro to Linux course.
- the ability to use a text editor.
- some familiarity with python.
- familiarity with SLURM commands for submitting jobs to a cluster.