Insert_size calculation bug

[PfaffS]

When in the scr-ref.bam no paired reads are mapped, the script scale-reads.pl will divide by 0.
It tries to print the mean of all paired mapped reads template lengths (TLEN 9th column in .bam). If there are no paired reads it will try to calculate it by dividing by 0.

[PfaffS]

Fixed in
https://github.com/chloroExtractorTeam/chloroExtractor/tree/fix_scr_tlen_spfaff

[greatfireball]

I would like to add a test for that bug to guarantee its fix inside the source code.
Due to I only need to test scale-reads.pl i will need some reads which just map single end. Are your reads available? I do require about 10k read pairs.

[greatfireball]

Reopened because of missing test

[greatfireball]

Are you able to provide a testset @PfaffS ?

[greatfireball]

Just bumping up the issue again @PfaffS

How about writing a test?

[greatfireball]

And once more @PfaffS