In gfaestus
an "overlay" is a color scheme that gives each node in
the graph a color based on some property, or set of properties, of the
node.
Some examples are coloring each node based on a hash of its sequence, a hash of the paths on the node, or from an external data source such as a BED file.
Overlays are added to gfaestus
at runtime with
Rhai scripts.