Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

How to merge BMMC and HSPC #2

Open
danielee0707 opened this issue Mar 31, 2024 · 1 comment
Open

How to merge BMMC and HSPC #2

danielee0707 opened this issue Mar 31, 2024 · 1 comment

Comments

@danielee0707
Copy link

danielee0707 commented Mar 31, 2024 •
edited
Loading

Hi, thank you for sharing the reproducibility notebook! May I ask how the RDS at /data/Multiome/DN4_BMMC_HSPC_Multiome_wrapper.filtered.anno in Note-4 was generated from individual datasets? I may have missed this part in the notebooks, and if so please point me to the right one. The Get_Started notebook only shows steps for one dataset. How did you merge the processed results for HSPC with BMMC, or were they concatenated first before running RedeemR? I also noticed that the number of cells in the provided Seurat multi-omic annotated object is slightly different from the sum of the RedeemR outputs for the two datasets, so was one further filtered towards the other one?
@chenweng1991
Copy link
Owner

Thank you @danielee0707, please refer to chenweng1991/redeemR#5
Best
Chen

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@danielee0707 @chenweng1991