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a/documentation/_sources/parameters/cfd/physical_properties.rst.txt +++ b/documentation/_sources/parameters/cfd/physical_properties.rst.txt @@ -104,7 +104,7 @@ Physical Properties where :math:`F_B` denotes the buoyant force source term, :math:`\beta` is the thermal expansion coefficient, :math:`T` is temperature, and :math:`T_\text{ref}` is the reference temperature. This is only used when a constant thermal expansion model is used. - * The ``tracer diffusivity model`` specifies the model used to calculate the tracer diffusivity. At the moment, only a constant tracer diffusivity is supported. + * The ``tracer diffusivity model`` specifies the model used to calculate the tracer diffusivity. At the moment, a constant tracer diffusivity and level set based :math:`\tanh` model are supported. The ``immersed solid tanh`` model is intended to be used with immersed solids with the ``lethe-fluid-sharp`` executable as a way to set diffusivity inside solids as well (described more in `Immersed Solid Models`_). * The ``tracer diffusivity`` parameter is the diffusivity coefficient of the tracer in units of :math:`\text{Length}^{2} \cdot \text{Time}^{-1}` . In SI, this is :math:`\text{m}^{2} \cdot \text{s}^{-1}`. @@ -226,6 +226,42 @@ Conjugate heat transfer enables the addition of solid regions in which the fluid end end +.. _immersed solid models: + +Immersed Solid Models +~~~~~~~~~~~~~~~~~~~~~~ + +Immersed solid models can be used to affect specific behavior to immersed solids when ``lethe-fluid-sharp`` is used. At the moment, such a model is only available for the ``tracer`` multiphysics, but additional physics will be included in the future. + +The immersed solid properties models are based on the signed distance function of the immersed solids, and therefore depend on the depth inside the solid. The intent behind these models is to define physical properties in the fluid and solid phases as well as in the transition regions. + +The ``tracer diffusivity model`` parameter sets which diffusivity model is used. The default model is ``constant``, which uses a constant ``tracer diffusivity``. The alternative is ``immersed solid tanh``, whose parameters are defined as such, with :math:`D` being the tracer diffusivity (outside and inside), :math:`\lambda` being signed distance and :math:`t` the thickness of the transition zone between both diffusivity values: + +.. math:: + + D(\lambda) = D_\text{inside} + \left(D_\text{outside} - D_\text{inside}\right) \left( 0.5 + 0.5 \tanh \left(\frac{\lambda}{t}\right)\right) + +.. code-block:: text + + subsection physical properties + set number of fluids = 1 + subsection fluid 0 + set kinematic viscosity = 0.01 + set tracer diffusivity model = immersed solid tanh + subsection immersed solid tanh + set tracer diffusivity inside = 1 + set tracer diffusivity outside = 1 + set thickness = 1 + end + end + end + +* The ``tracer diffusivity inside`` parameter represents the desired diffusivity inside of the solid. + +* The ``tracer diffusivity outside`` parameter represents the desired diffusivity outside of the solid. + +* The ``thickness`` parameter represents thickness of the applied :math:`\tanh` function. + .. _rheological_models: Rheological Models diff --git a/documentation/objects.inv b/documentation/objects.inv index 5430bd7496a370063234fc42578dda7307cda847..fb3fcadf28053209e817fe48f37de880eb459f10 100644 GIT binary patch delta 7117 zcmV;;8#3hIIrTY^!UZIg&xpv8$But$xEqnl1XTS+`d9>hal!pCPG!J-8HR%dB|cXx z9#%<51lC<++ij?PYSWbP1hJ23s_Ddnom445>}0Z2@@6KoED?SdCv|1AI1bZit4+G5 zzch$%P#zQ%E9vcI82i{v-F2X%qV2J{USj@)%g~txQxL;LEH+kkna|XDUF; z<%L{;atq!1Kp^l=r2bm+jk*PaH!556?IPo9vxO>$(PkjuU_t;@L<<3J&Neb#kEl%| z=0t2trd_4Bv5K-AmCEv$ZH-eZG+V?`Ad)=`#a_ZIlP&@te+ON}IdOTGD$M8GP()B^ zaUes!OyUiV05QBya+t!xf~qC}2qv#;HnLt-@Li>>2g6>V%GcuybX66+L;$%8p~FP% zvrHloIif{O32sW9);Y|47!bkyxTCC!L+F%iv(+h`}nz~khX?G6{VR7LmF$IL1PB-P3qmGW-QaJxMjr+D{fiMwWzrjb!J3; z()j=-h7JQgWGBL0rfdm=SGJZ6#>S=aCChLC2R@JvPfMsoC|C!$6^YnLOn>GtgJ(FN zZlo74y=9oIz{1pGxE8~K9S1Soh~Y*ICo$ZLnOkt5f9l|_47h6p?wr7#>rykU3z4W4 zGU6rC)3m_WQmxh*6B!HCaw!vNCq{1zvVfj}l$nS=GaRAlN#0_Y+yEi0Gy;(cWViv| zqh>4U+kx2dMIy!L+JmW*0w#}_R2h2q(l9x!$_kj=!o&`Zln7G~r1(^Y$q^{$6YQfBVkLj(*8k(D51Wb{GxQz^iu{)Aa;v zqHPkx>y;^)+FCKp^wz0hHZO#{K_S;B9fiY2YXO>=g@9R9R@3#Oa$ZS+V%t3qn6Ms# zw;D!7nfA;Jfm$he@*qJ8*xT8;X0ExgcgO`tNSV%PAnWcSc?7dw9PV(ryo3=;Zl2)^ ze;!sEk<6i*VQvQ4JBd8qIac^bnL>|C?Z{J5vVxMqLMGQLJe`@nf=BC_^svUU`whe6 z%xr%y=n*8OexkNC;2TiBNaYa*^9pA>niJ=^DI-StmW47}!PHY3 z8%7{Y#6HB)99M&x6gj7ku~6_9?Rzr~fAT64Zjf+|gjbO8nap7U0lkZfD1cSu3Oe`- z9}`LMB`y!JktQw;^`;=F#R2{WSxKA;ddeSTtxc_7$m?;5XyE+b$FOse^w76 zrzV+Qn&bwCJc{-_NMNY1{&vglrZ=)Mft_JOT?+hha)dv+^qGP;1L~Q*4ka#K*oDm2 zaljs*y}o!-=ZEbGqeN191KUYXiK9wuOh1}*b_VIEnC<{V{ju>l44|u2L+}Nr)rH23 zQ2iyx)nORoo>}-=SDI7&$nqM8`RZ1anHRV@RYAOYapm-#XsH)YFmVL@}zg#__RCXKyII z0mP1eL6UFGkxHCqFdh0h_Q32sNa2Qgciu(`Lk43+zR|m?%NkjaPW7j8e^~2J9T>Xg z=?Qxg-!`8IWID@Li(A?}IVm5UCw1BbcMkE1;Jq;~{ zUHW8Z$%ZI1Io-z-k<`Z z3jX%j|AxiTPQnBtcDU!DJXgjPEr7>wUcda!_s@Uxhv(fQda|`z?^M9gC=d1f=kqPLL4VF4)iR`?}%onoqpiaA`eqRDD$+rqk^j z_UzBvNu%`|%dl%Af4HKY*?rt=O~!x7y_r@AbJ?ZIWp6Nd_GQjvrYL#D6Cn0cEf%oo zrfswtIiWF$zFew(EDo&BvE=NY@3*Ja#WAkZjrMxKr7|E7_-QBt$*%Kcp(30_46-}T zEw752Lslqm9j- zK4*5MjmF%Ort!S3Wi(KXJ0tG|G2wWfy*ew8?flxYt|A z2+vpO(v+^4da{PG9K_Zvu5AA4|NSo#;Ol7!W=Fo8f1IGlLD!z8E|;1Drn!P*NEtJ0 zcM5FhO;BYTUqzBAPwVmZEjzxHy~)%)SEes z?_k#EXxC8S1(2xS!dwH5OP!4DA55Lpo<;z67dDV6X`n(gxfBuKCNa=#8joWz^c1%! zFpXX6f3zQpQ8HfQ1}hF#;DCk}(PL&uO;;Qw_|ExI6Y^{gdv)mcz6kg)=I*^OZ!Chz zjH{5DAz<^9GxpC`GW4Y@GT6O!sI-Gx9E1l%TGXcx=QEdme6qproo~6|JC(w|BIRU- z*^@Oa`5?9$>rXnLtlnNH z+w7S&)8I?F!LcWXVLHim=jzGp)aDNS>@BykH#vWOfrDIypn-ZFXHWsqYOq=LMd%x2 zEmI|Qu9u)87T>|S_QtT6zs#g#EaVh|R>;xUC ze^~fr+*njR4i{u-@c859^^-c+ERT#~k1<5j=R8ro5kYUJ6U)II?TJK03*uHKky#xo zWlHL;`TGwSCug%kFNaq_>8{{B?;1nYsrJ1~Ee>`XLdyxdrsYYl!&)7@!$fj1`@gyHyg&%W>GZJX7RHnn=j@GKNJYrE=k^~ck5trI&y zCwm{G>)KFRGwA-@NqXKvPT#e=sRDBG&{a^N)7F8*HL#K~j77;F9bw2>(=mrmC~r*k zOa^+;n2cdGD)K=yNEtQkOroBo)ji@U4vDGA0}Y5{556aqA948Y;?}gGp9G~@f7sds z>QpvAKjUYwFNQ(DgLVm`MbL}Va@dtI3FTz&W*1q_#l7Q)NOqVikCXblZwu~ePu3mu z8Y#h{+wZNI7J|%#!sS$jWhN zgzjVx0NaWr!PCUfS#Jc*H2sewe^b}Nd+4(7e@I32K|$Ufoxq(nR<(neTdP{i zpW4sbNn^3LlQfV&73q})VZ~P+J@o7u7|_t6SUT)ic=xlSM>St`bi*rQ=(D-B>Qwl8 z3g{VLKpYmv01;WuyZ8B1(6||l{Wz6!(iOa#+d?OEb}n*Xx;Wup-~WlCaS^lsJegO`u3=T28tA2u38!F>0KF_u&}n$usCoRWgh%#? 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This parameter is set to 1 except in Two Phase Simulations .

  • The reference temperature parameter specifies the reference temperature used in the calculation of some physical properties or the thermal expansion force.

    • @@ -536,7 +536,7 @@

    Physical Propertiessecond fluid id should be greater than the first fluid id.

    -

  • The surface tension model specifies the model used to calculate the surface tension coefficient of the fluid-fluid pair. At the moment, constant, linear, and phase_change models are supported. For more details on the surface tension models, see Surface Tension Models.

    • +

  • The surface tension model specifies the model used to calculate the surface tension coefficient of the fluid-fluid pair. At the moment, constant, linear, and phase_change models are supported. For more details on the surface tension models, see Surface Tension Models.

  • The surface tension coefficient parameter is a constant surface tension coefficient of the two interacting fluids in units of \(\text{Mass} \cdot \text{Time}^{-2}\). In SI, this is \(\text{N} \cdot \text{m}^{-1}\). The surface tension coefficient is used as defined in the Weber number (\(We\)):

    @@ -544,9 +544,9 @@

    Physical Properties\(Re\) is the Reynolds number, \(\mu_\text{ref}\) and \(u_\text{ref}\) are some reference viscosity and velocity characterizing the flow problem, and \(\sigma\) is the surface tension coefficient.

    • -

  • The reference state temperature parameter is the temperature of the reference state at which the surface tension coefficient is evaluated. This parameter is used in the calculation of the surface tension using the linear surface tension model (see Surface Tension Models).

    • -

  • The temperature-driven surface tension gradient parameter is the surface tension gradient with respect to the temperature of the two interacting fluids in units of \(\text{Mass} \cdot \text{Time}^{-2} \cdot \text{Temperature}^{-1}\). In SI, this is \(\text{N} \cdot \text{m}^{-1} \cdot \text{K}^{-1}\). This parameter is used in the calculation of the surface tension using the linear surface tension model (see Surface Tension Models).

    • -

  • The solidus temperature and liquidus temperature parameters are used in the calculation of the surface tension using the phase_change surface tension model (see Surface Tension Models).

    • +

  • The reference state temperature parameter is the temperature of the reference state at which the surface tension coefficient is evaluated. This parameter is used in the calculation of the surface tension using the linear surface tension model (see Surface Tension Models).

    • +

  • The temperature-driven surface tension gradient parameter is the surface tension gradient with respect to the temperature of the two interacting fluids in units of \(\text{Mass} \cdot \text{Time}^{-2} \cdot \text{Temperature}^{-1}\). In SI, this is \(\text{N} \cdot \text{m}^{-1} \cdot \text{K}^{-1}\). This parameter is used in the calculation of the surface tension using the linear surface tension model (see Surface Tension Models).

    • +

  • The solidus temperature and liquidus temperature parameters are used in the calculation of the surface tension using the phase_change surface tension model (see Surface Tension Models).

  • The cahn hilliard mobility model specifies the model used to calculate the mobility used in the Cahn-Hilliard equations for the pair of fluid. Two models are available: a constant mobility and a quartic mobility. The reader is refered to Cahn-Hilliard for more details.

  • The cahn hilliard mobility coefficient parameter is the constant mobility coefficient of the two interacting fluids used in the Cahn-Hilliard equations. Its units are \(\text{Length}^{2} \cdot \text{Time}^{-1}\).

    • @@ -632,8 +632,37 @@

    Material Physical Property Models +

    Immersed Solid Models#

    +

    Immersed solid models can be used to affect specific behavior to immersed solids when lethe-fluid-sharp is used. At the moment, such a model is only available for the tracer multiphysics, but additional physics will be included in the future.

    +

    The immersed solid properties models are based on the signed distance function of the immersed solids, and therefore depend on the depth inside the solid. The intent behind these models is to define physical properties in the fluid and solid phases as well as in the transition regions.

    +

    The tracer diffusivity model parameter sets which diffusivity model is used. The default model is constant, which uses a constant tracer diffusivity. The alternative is immersed solid tanh, whose parameters are defined as such, with \(D\) being the tracer diffusivity (outside and inside), \(\lambda\) being signed distance and \(t\) the thickness of the transition zone between both diffusivity values:

    +
    +
    +\[D(\lambda) = D_\text{inside} + \left(D_\text{outside} - D_\text{inside}\right) \left( 0.5 + 0.5 \tanh \left(\frac{\lambda}{t}\right)\right)\]
    +
    +
    subsection physical properties
+  set number of fluids = 1
+  subsection fluid 0
+    set kinematic viscosity = 0.01
+    set tracer diffusivity model = immersed solid tanh
+    subsection immersed solid tanh
+      set tracer diffusivity inside    = 1
+      set tracer diffusivity outside   = 1
+      set thickness                    = 1
+    end
+  end
+end
+
    +
    +
      +

    • The tracer diffusivity inside parameter represents the desired diffusivity inside of the solid.

      • +

    • The tracer diffusivity outside parameter represents the desired diffusivity outside of the solid.

      • +

    • The thickness parameter represents thickness of the applied \(\tanh\) function.

      • +
    +
    -

    Rheological Models#

    +

    Rheological Models#

    Two families of rheological models are supported in Lethe. The first one are generalized non Newtonian rheologies (for shear thinning and shear thickening flows). In these models, the viscosity depends on the shear rate. The second family of rheological models possess a viscosity that is independent of the shear rate, but that may depend on other fields such as the temperature.

    The rheological model parameter sets which rheological model you are using. The default rheological model is newtonian, which uses a constant kinematic viscosity.

    subsection physical properties
@@ -764,7 +793,7 @@ 
    Carreau Model
-
    Density Models#
    
+
    Density Models#
    
 
    Lethe supports both constant and isothermal_ideal_gas density models. Constant density assumes a constant density value. Isothermal ideal gas density assumes that the fluid’s density varies according the following state equation:
    
 
    
 
    
@@ -798,7 +827,7 @@ 
    Carreau Model
-
    Thermal Conductivity Models#
    
+
    Thermal Conductivity Models#
    
 
    Constant, linear and phase_change thermal conductivities are supported in Lethe. Constant thermal conductivity assumes a constant value of the thermal conductivity. Linear thermal conductivity assumes that that the thermal conductivity \(k\) varies linearly with the temperature, taking the following form:
    
 
    
 
    
@@ -984,7 +1013,7 @@ 
    Phase Change
 
    Interface Physical Property Models#
    
 
    
-
    Surface Tension Models#
    
+
    Surface Tension Models#
    
 
    Lethe supports three types of surface tension models: constant, linear, and phase_change. A constant surface tension model assumes a constant value of surface tension, while a linear surface tension assumes that the surface tension evolves linearly with the temperature:
    
 
    
 
    
@@ -1092,6 +1121,7 @@ 
    ReferencesMaterial Physical Property Models
      
 
    • Two Phase Simulations
      • 
 
    • Conjugate Heat Transfer
      • 
+
    • Immersed Solid Models
      • 
 
    • Rheological Models
        
 
      • Power-Law Model
        • 
 
      • Carreau Model
        • 
diff --git a/documentation/searchindex.js b/documentation/searchindex.js
index afa32e72c1..f9e8faecd6 100644
--- a/documentation/searchindex.js
+++ b/documentation/searchindex.js
@@ -1 +1 @@
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"examples/incompressible-flow/3d-taylor-green-vortex/3d-taylor-green-vortex", "examples/incompressible-flow/3d-turbulent-taylor-couette/3d-turbulent-taylor-couette", "examples/incompressible-flow/incompressible-flow", "examples/multiphysics/3d-dam-break/3d-dam-break", "examples/multiphysics/air-bubble-compression/air-bubble-compression", "examples/multiphysics/capillary-wave/capillary-wave", "examples/multiphysics/concentric-heat-exchanger/concentric-heat-exchanger", "examples/multiphysics/dam-break/dam-break", "examples/multiphysics/heat-transfer", "examples/multiphysics/laser-heating/laser-heating", "examples/multiphysics/laser-melt-pool/laser-melt-pool", "examples/multiphysics/melting-cavity/melting-cavity", "examples/multiphysics/multiphysics", "examples/multiphysics/rayleigh-benard-convection/rayleigh-benard-convection", "examples/multiphysics/rayleigh-plateau-instability/rayleigh-plateau-instability", "examples/multiphysics/rayleigh-taylor-instability/rayleigh-taylor-instability", "examples/multiphysics/rising-bubble/rising-bubble", "examples/multiphysics/sloshing-in-rectangular-tank/sloshing-in-rectangular-tank", "examples/multiphysics/static-bubble/static-bubble", "examples/multiphysics/stefan-problem/stefan-problem", "examples/multiphysics/tracer", "examples/multiphysics/tracer-through-cad-junction/tracer-through-cad-junction", "examples/multiphysics/vof", "examples/multiphysics/warming-up-a-viscous-fluid/warming-up-a-viscous-fluid", "examples/multiphysics/water-injection-in-a-closed-cell/water-injection-in-a-closed-cell", "examples/rpt/particle-fem-reconstruction/particle-fem-reconstruction", "examples/rpt/photon-count-calculation-in-a-cylindrical-vessel/photon-count-calculation-in-a-cylindrical-vessel", "examples/rpt/rpt", "examples/rpt/tuning-parameters-with-nomad/tuning-parameters-with-nomad", "examples/sharp-immersed-boundary/3d-composite-mixer-with-pbt-impeller/3d-composite-mixer-with-pbt-impeller", "examples/sharp-immersed-boundary/3d-opencascade-mixer-with-pbt-impeller/3d-opencascade-mixer-with-pbt-impeller", "examples/sharp-immersed-boundary/3d-rbf-static-mixer/3d-rbf-static-mixer", "examples/sharp-immersed-boundary/cylinder-with-sharp-interface/cylinder-with-sharp-interface", "examples/sharp-immersed-boundary/geometry-definition", "examples/sharp-immersed-boundary/inclined-3d-composite-mixer-with-pbt-impeller/inclined-3d-composite-mixer-with-pbt-impeller", "examples/sharp-immersed-boundary/incompressible-flow", "examples/sharp-immersed-boundary/resolved-cfd-dem", "examples/sharp-immersed-boundary/sedimentation-1-particle/sedimentation-1-particle", "examples/sharp-immersed-boundary/sedimentation-64-particles/sedimentation-64-particles", "examples/sharp-immersed-boundary/sharp-immersed-boundary", 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"tools/postprocessing/postprocessing_paraview.rst", "tools/postprocessing/postprocessing_pyvista.rst", "tools/tools.rst", "tools/updating-test-results.rst"], "titles": ["Applications Overview", "Contributing", "Bouncing Particle", "Bunny Drill", "Discrete Element Method (DEM)", "Granular Dam-Break", "Granular Mixer", "Oblique Wall Impact", "Packing in Ball", "Packing in Circle", "Rectangular Hopper", "Rotating Drum with Postprocessing", "Rotating Drum", "Rotation of Box", "Silo", "Small Scale Rotating Drum Postprocessing", "Small Scale Rotating Drum", "Examples", "Flow past a Backward-Facing Step", "Flow around a Cylinder", "Lid-Driven Cavity Flow", "Flow around NACA0012 at Low Reynolds Number", "Taylor-Couette Flow Using Nitsche Immersed Boundary", "Taylor-Couette Flow", "Transient Flow around an Ahmed Body", "Transient Flow around a Cylinder", "Flow around a Sphere", "Flow over Periodic Hills", "Ribbon Mixer Using a Single Rotating Reference Frame", "Mixer with Pitched-Blade Turbine 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21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 39, 40, 41, 43, 44, 45, 47, 48, 49, 53, 54, 55, 56, 58, 59, 60, 63, 64, 67, 68, 72, 73, 74, 75, 76, 77, 78, 79, 80, 82, 83, 84, 86, 87, 88, 90, 91, 99, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 115, 118, 119, 121, 122, 123, 125, 132, 133, 134, 136, 137, 138, 140, 143, 144, 146, 148, 150, 154, 155, 156, 158, 162, 168, 169, 170, 171, 172], "trace": [0, 136, 169], "experiment": [0, 5, 7, 14, 16, 18, 19, 20, 27, 28, 33, 37, 55, 58, 67, 78, 82, 109, 133, 134, 135, 137, 148, 150, 167], "measur": [0, 10, 23, 24, 29, 30, 31, 33, 56, 58, 67, 93, 101, 126, 134, 146, 148], "obtain": [0, 2, 5, 7, 11, 15, 16, 18, 19, 20, 21, 23, 24, 25, 26, 27, 29, 30, 31, 33, 34, 35, 36, 47, 48, 49, 51, 54, 55, 56, 58, 59, 60, 61, 62, 64, 67, 68, 70, 72, 77, 82, 100, 103, 131, 134, 137, 140, 142, 143, 144, 146, 150, 154, 156, 158, 161, 162, 169, 170, 171], "radioact": [0, 17, 55, 56, 81, 131, 132, 141], "track": [0, 12, 15, 17, 37, 40, 45, 55, 56, 58, 61, 81, 105, 110, 131, 134, 141, 150], "l2": [0, 22, 26, 55, 73, 74, 75, 78, 89, 100, 108, 110, 133, 134, 140], "project": [0, 33, 35, 44, 45, 46, 48, 55, 61, 72, 73, 75, 76, 81, 83, 84, 100, 110, 118, 133, 140, 146, 150, 170], "calcul": [0, 2, 11, 15, 18, 19, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31, 34, 35, 36, 39, 40, 41, 44, 45, 46, 48, 54, 55, 61, 62, 64, 67, 68, 72, 73, 74, 75, 76, 77, 78, 89, 90, 94, 97, 101, 106, 107, 108, 109, 110, 113, 115, 118, 126, 132, 133, 134, 135, 136, 137, 138, 140, 141, 142, 148, 150, 158, 169], "volumetr": [0, 27, 34, 74, 101, 110, 146, 154], "finit": [0, 19, 40, 46, 48, 49, 51, 55, 81, 94, 101, 104, 128, 138, 143, 150, 152, 157, 161, 163, 164, 167], "mesh": [0, 1, 43, 55, 58, 59, 70, 80, 89, 92, 93, 94, 96, 98, 102, 103, 107, 112, 115, 118, 120, 128, 133, 137, 138, 139, 140, 143, 150, 168, 172], "an": [0, 1, 2, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 39, 40, 43, 44, 45, 46, 47, 48, 49, 51, 52, 53, 54, 55, 56, 58, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 81, 82, 83, 84, 86, 87, 89, 90, 93, 95, 97, 98, 99, 100, 102, 103, 105, 106, 108, 109, 110, 111, 112, 114, 115, 116, 117, 118, 119, 122, 123, 125, 128, 131, 135, 137, 138, 140, 141, 142, 144, 146, 148, 150, 154, 156, 158, 160, 161, 162, 167, 168, 169, 170, 171], "check": [1, 10, 14, 16, 28, 44, 48, 61, 67, 68, 72, 73, 74, 75, 76, 78, 110, 111, 113, 118, 124, 125, 131, 169, 170, 172], "util": [1, 29, 31, 83, 143, 168, 169, 174], "repositori": [1, 15, 29, 82, 83, 84, 87], "addit": [1, 10, 12, 15, 18, 19, 22, 23, 28, 35, 39, 44, 51, 56, 60, 70, 71, 72, 73, 75, 76, 77, 80, 83, 98, 101, 102, 104, 106, 107, 109, 112, 116, 117, 118, 124, 137, 140, 143, 144, 158, 160, 161], "case": [1, 80, 86, 87, 90, 91, 93, 96, 101, 103, 104, 105, 107, 108, 109, 112, 114, 122, 123, 125, 128, 137, 138, 140, 144, 146, 148, 150, 158, 159, 160, 161, 169, 170, 171, 172], "script": [1, 2, 7, 10, 15, 18, 20, 21, 23, 25, 28, 30, 31, 33, 34, 35, 36, 37, 41, 44, 45, 46, 47, 48, 49, 54, 56, 58, 61, 64, 74, 78, 83, 87, 122, 137, 143, 168, 169, 170, 172, 174], "geo": [1, 5, 18, 19, 21, 24, 25, 26, 28, 29, 33, 36, 51, 168], "file": [1, 80, 82, 84, 86, 87, 89, 93, 96, 99, 102, 103, 104, 107, 109, 110, 111, 112, 115, 126, 127, 128, 131, 132, 133, 134, 135, 136, 137, 138, 140, 143, 168, 170, 172, 174], "should": [1, 7, 8, 9, 12, 14, 16, 18, 19, 21, 22, 26, 27, 28, 35, 36, 37, 40, 43, 48, 49, 53, 56, 59, 67, 68, 71, 72, 73, 74, 75, 76, 77, 78, 80, 82, 83, 84, 86, 87, 88, 90, 91, 92, 93, 95, 97, 98, 99, 101, 102, 103, 104, 105, 106, 107, 108, 109, 111, 112, 114, 118, 119, 121, 122, 123, 124, 125, 127, 133, 137, 138, 143, 150, 155, 158, 159, 168, 169, 170, 171], "onli": [1, 2, 6, 7, 8, 9, 10, 11, 14, 15, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 31, 39, 41, 43, 44, 48, 49, 53, 56, 59, 60, 61, 62, 64, 67, 68, 70, 72, 74, 75, 77, 80, 82, 83, 84, 87, 90, 91, 95, 97, 101, 102, 103, 104, 106, 107, 108, 109, 110, 111, 112, 114, 115, 118, 119, 122, 124, 125, 126, 128, 133, 134, 137, 139, 140, 143, 146, 148, 150, 158, 161, 168, 169, 170, 171, 174], "either": [1, 9, 18, 22, 31, 35, 82, 85, 90, 93, 100, 102, 109, 111, 118, 128, 135, 137, 150, 158, 169, 174], "fix": [1, 19, 22, 23, 24, 25, 27, 31, 37, 47, 53, 90, 108, 112, 119, 140, 158], "issu": [1, 20, 28, 60, 82, 102, 103, 158], "add": [1, 11, 14, 22, 24, 27, 28, 35, 41, 51, 70, 82, 83, 84, 86, 87, 89, 106, 107, 114, 143, 144, 146, 148, 150, 158, 168, 169, 170, 171], "singl": [1, 2, 5, 7, 8, 15, 20, 26, 30, 35, 45, 47, 51, 56, 67, 68, 72, 73, 74, 75, 79, 80, 81, 84, 87, 90, 109, 112, 117, 122, 127, 135, 137, 143, 144, 150, 159, 168], "featur": [1, 80, 95, 102, 106, 108, 109, 111, 119, 122, 124, 125, 126, 137, 142, 148, 158], "restructur": 1, "one": [1, 2, 3, 5, 7, 9, 10, 15, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30, 31, 35, 36, 43, 49, 51, 53, 56, 59, 60, 61, 62, 67, 68, 70, 72, 73, 74, 75, 76, 78, 80, 81, 83, 84, 87, 90, 92, 95, 98, 99, 100, 102, 104, 105, 107, 108, 109, 110, 111, 112, 115, 118, 119, 122, 125, 131, 134, 137, 138, 140, 143, 144, 148, 150, 154, 155, 158, 161, 167, 168, 169, 171], "aspect": [1, 27, 33, 51, 59, 80, 131, 137, 170], "plu": [1, 84, 126], "test": [1, 2, 7, 15, 18, 24, 27, 33, 34, 35, 47, 49, 53, 54, 80, 81, 82, 87, 97, 100, 108, 109, 114, 115, 118, 120, 144, 146, 155, 156, 158, 162, 173], "need": [1, 2, 5, 6, 7, 9, 10, 12, 14, 15, 16, 19, 20, 21, 22, 23, 27, 28, 29, 33, 34, 35, 44, 45, 47, 54, 59, 61, 64, 67, 68, 72, 73, 74, 75, 76, 77, 78, 82, 83, 84, 86, 87, 91, 92, 104, 111, 114, 119, 121, 128, 134, 137, 144, 146, 148, 150, 157, 158, 164, 167, 168, 169, 170, 171, 172], "certifi": 1, "If": [1, 9, 14, 15, 19, 20, 26, 27, 28, 30, 35, 37, 44, 48, 51, 53, 60, 70, 72, 73, 74, 75, 76, 80, 83, 84, 86, 87, 89, 97, 99, 101, 102, 104, 105, 107, 108, 110, 112, 113, 118, 119, 122, 123, 125, 127, 129, 130, 137, 138, 140, 142, 143, 144, 150, 158, 168, 169, 170, 171, 172, 174], "ar": [1, 2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 80, 81, 82, 83, 84, 86, 87, 88, 89, 90, 91, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 128, 129, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 143, 144, 146, 148, 150, 154, 155, 156, 158, 161, 162, 167, 168, 169, 170, 171, 172, 174], "mani": [1, 23, 31, 36, 47, 51, 67, 68, 74, 84, 104, 169], "chang": [1, 5, 15, 16, 18, 19, 20, 21, 24, 26, 27, 29, 34, 35, 36, 39, 40, 41, 43, 46, 48, 49, 53, 56, 58, 61, 67, 68, 71, 74, 82, 84, 86, 90, 91, 101, 102, 107, 108, 117, 140, 144, 146, 158, 168, 169, 170, 174], "better": [1, 3, 12, 18, 20, 21, 22, 23, 26, 29, 30, 39, 40, 41, 45, 56, 61, 71, 87, 125, 138, 146, 158, 159, 169], "creat": [1, 2, 6, 7, 8, 10, 12, 15, 16, 19, 21, 28, 31, 41, 43, 49, 51, 53, 59, 61, 62, 67, 68, 70, 73, 75, 76, 77, 80, 81, 82, 84, 86, 87, 90, 91, 100, 103, 104, 111, 112, 115, 127, 137, 144, 158, 167, 170, 173], "multipl": [1, 15, 20, 24, 28, 29, 35, 44, 60, 61, 67, 68, 70, 83, 84, 87, 99, 105, 107, 112, 137, 143, 146, 154, 158, 167, 169, 171, 172], "branch": [1, 83, 86], "The": [1, 2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 86, 87, 88, 89, 90, 91, 92, 93, 95, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 144, 145, 148, 151, 154, 155, 156, 157, 158, 160, 161, 162, 164, 167, 168, 169, 170, 171, 172, 174], "start": [1, 2, 6, 9, 10, 12, 14, 16, 18, 19, 20, 21, 26, 28, 29, 33, 36, 37, 39, 40, 41, 46, 54, 55, 56, 58, 67, 68, 70, 72, 73, 74, 75, 76, 77, 78, 84, 87, 92, 95, 100, 101, 102, 103, 105, 107, 111, 112, 115, 121, 122, 123, 127, 133, 137, 155, 156, 158, 162, 169, 170, 171, 172], "action": [1, 2, 3, 9, 23, 33, 72, 146, 170], "verb": 1, "contain": [1, 9, 14, 20, 22, 23, 25, 26, 28, 29, 36, 37, 41, 46, 48, 49, 55, 56, 58, 59, 61, 67, 68, 70, 77, 80, 81, 83, 86, 88, 89, 95, 104, 110, 112, 123, 132, 133, 134, 135, 136, 137, 143, 167, 168, 170, 171], "idea": [1, 21, 56, 61, 144, 158, 168, 170], "clang": [1, 82, 143], "have": [1, 2, 3, 5, 6, 8, 9, 10, 12, 15, 18, 19, 20, 21, 22, 23, 25, 26, 27, 29, 30, 31, 33, 35, 36, 44, 48, 51, 53, 56, 58, 59, 61, 62, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 80, 82, 83, 84, 86, 87, 92, 101, 102, 105, 107, 108, 109, 110, 112, 113, 114, 117, 118, 119, 122, 123, 128, 132, 133, 137, 140, 143, 144, 148, 158, 161, 167, 168, 169, 170, 171, 172], "uniform": [1, 2, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 16, 18, 19, 23, 25, 27, 44, 48, 61, 62, 67, 68, 71, 72, 73, 74, 75, 76, 77, 78, 101, 105, 123, 137, 138, 150, 170], "indent": [1, 143], "across": [1, 24, 53, 109, 146], "sourc": [1, 39, 40, 56, 58, 61, 72, 80, 81, 83, 86, 90, 91, 94, 97, 107, 109, 112, 125, 132, 136, 138, 141, 142, 148, 150, 159, 162, 167, 168, 169, 172], "you": [1, 2, 7, 10, 15, 19, 20, 21, 26, 27, 28, 30, 34, 35, 36, 44, 47, 49, 54, 55, 56, 58, 60, 61, 67, 68, 70, 73, 74, 78, 80, 82, 83, 84, 85, 86, 87, 89, 97, 102, 103, 104, 108, 109, 111, 113, 116, 117, 122, 142, 143, 158, 159, 168, 169, 170, 172], "alwai": [1, 2, 15, 20, 29, 74, 83, 86, 107, 108, 112, 125, 137, 143, 148, 150, 169, 172], "contrib": [1, 15, 122, 168, 172, 174], "folder": [1, 2, 3, 5, 7, 9, 12, 14, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 59, 60, 61, 64, 68, 70, 72, 73, 74, 75, 76, 77, 78, 80, 81, 82, 84, 86, 87, 110, 127, 168, 169, 172], "befor": [1, 7, 8, 10, 14, 15, 18, 19, 27, 28, 29, 35, 36, 44, 53, 56, 67, 68, 73, 78, 92, 100, 104, 105, 111, 121, 122, 127, 128, 133, 137, 143, 156, 158, 168, 169, 170, 174], "pr": [1, 36, 55], "compat": [1, 51, 62, 74, 86, 87, 122, 137, 143], "download_clang_format": 1, "compile_clang_format": 1, "For": [1, 6, 8, 9, 12, 15, 18, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 33, 34, 35, 41, 44, 45, 47, 48, 49, 51, 53, 54, 59, 61, 64, 67, 68, 70, 71, 72, 73, 75, 76, 77, 78, 80, 83, 84, 86, 87, 90, 91, 92, 93, 95, 96, 98, 100, 101, 102, 103, 104, 105, 107, 108, 109, 110, 112, 113, 115, 118, 119, 121, 122, 123, 124, 125, 126, 128, 133, 137, 138, 143, 144, 148, 150, 154, 155, 156, 158, 159, 160, 162, 167, 168, 169, 170, 171, 172], "paramet": [1, 15, 62, 80, 81, 83, 84, 88, 89, 90, 91, 92, 93, 95, 97, 98, 100, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 117, 118, 119, 120, 121, 122, 123, 124, 126, 127, 128, 133, 135, 137, 138, 139, 140, 143, 144, 146, 148, 150, 158, 160, 161, 168, 169, 171], "specif": [1, 2, 7, 9, 18, 20, 27, 31, 34, 36, 40, 41, 43, 49, 51, 54, 56, 58, 72, 80, 83, 84, 90, 92, 97, 102, 122, 132, 137, 148, 150, 158, 168, 169, 170, 172], "prmindent": 1, "name_of_fil": 1, "prm": [1, 2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 80, 83, 84, 93, 102, 110, 118, 126, 131, 134, 137, 143, 168, 169], "At": [1, 6, 9, 20, 26, 28, 33, 37, 44, 45, 46, 53, 54, 56, 67, 68, 76, 82, 86, 87, 91, 93, 98, 105, 109, 115, 118, 122, 128, 137, 143, 158, 170], "least": [1, 9, 18, 21, 28, 55, 59, 61, 67, 68, 70, 80, 90, 92, 95, 102, 105, 114, 118, 122, 137, 150, 169], "2": [1, 2, 3, 5, 6, 7, 8, 9, 10, 12, 13, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 58, 59, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 81, 83, 86, 89, 90, 91, 93, 96, 97, 100, 101, 102, 104, 105, 107, 108, 109, 110, 112, 113, 115, 118, 119, 121, 122, 125, 127, 128, 132, 134, 136, 137, 138, 140, 143, 144, 146, 148, 150, 154, 155, 156, 158, 159, 160, 161, 167, 168, 169, 170, 171], "minor": [1, 70, 168], "like": [1, 10, 15, 22, 35, 41, 74, 81, 84, 90, 100, 103, 109, 117, 122, 144, 168, 169, 170, 172], "bug": 1, "small": [1, 9, 14, 18, 19, 22, 35, 39, 43, 47, 48, 49, 56, 61, 62, 64, 67, 68, 70, 71, 74, 77, 78, 88, 92, 99, 102, 108, 122, 125, 127, 137, 138, 148, 150, 170, 172], "3": [1, 2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 58, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 81, 82, 83, 86, 87, 91, 92, 93, 101, 102, 104, 105, 107, 108, 109, 110, 115, 119, 122, 123, 125, 128, 132, 134, 136, 137, 138, 143, 144, 146, 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22, 23, 25, 30, 31, 35, 36, 37, 41, 47, 49, 56, 62, 67, 72, 73, 74, 75, 78, 83, 103, 104, 107, 109, 112, 118, 122, 124, 125, 127, 137, 138, 140, 150, 156, 158, 159, 161, 170], "wrong": [1, 137, 174], "rang": [1, 9, 18, 20, 23, 27, 28, 30, 40, 41, 49, 61, 68, 95, 101, 102, 109, 118, 122, 125, 127, 137, 138, 146, 168, 169], "print": [1, 9, 15, 19, 20, 22, 23, 28, 31, 44, 64, 73, 74, 75, 76, 87, 89, 99, 102, 107, 108, 110, 118, 122, 127, 129, 130, 137], "int": [1, 20, 21, 30, 45, 46, 47, 48, 82, 138, 143, 146], "0": [1, 2, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 33, 34, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 82, 83, 86, 88, 89, 90, 91, 92, 93, 95, 96, 97, 100, 101, 102, 103, 104, 105, 107, 108, 109, 110, 112, 113, 115, 116, 117, 118, 119, 121, 122, 123, 125, 127, 128, 132, 133, 136, 137, 138, 140, 144, 146, 148, 150, 154, 155, 156, 158, 159, 160, 161, 162, 168, 169, 170, 171], "std": [1, 82, 110, 136], "cout": 1, "endl": 1, "header": [1, 68, 82, 87, 132, 134, 137], "row": 1, "my": 1, "beauti": 1, "automat": [1, 9, 18, 22, 23, 28, 31, 36, 51, 81, 82, 84, 87, 93, 96, 104, 107, 112, 125, 137, 143, 169, 173], "strip": 1, "spring": [2, 137], "dashpot": 2, "collis": [2, 7, 9, 10, 12, 14, 73, 74, 75, 76, 119, 122, 125, 127, 137, 148], "being": [2, 7, 15, 19, 21, 22, 27, 28, 33, 35, 44, 53, 56, 59, 60, 67, 71, 72, 81, 82, 89, 90, 91, 100, 102, 104, 105, 106, 108, 113, 118, 122, 150, 158, 159, 162, 167, 168, 169], "setup": [2, 7, 12, 28, 29, 51, 74, 78, 102, 115, 158, 172], "accord": [2, 7, 10, 12, 14, 15, 18, 21, 27, 40, 41, 43, 53, 56, 58, 59, 67, 68, 74, 78, 81, 104, 109, 111, 122, 126, 128, 146, 150, 158], "mfix": [2, 7, 148], "dem02": 2, "verif": [2, 7, 48], "It": [2, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 36, 44, 48, 49, 51, 53, 55, 58, 59, 60, 61, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 81, 82, 86, 90, 91, 93, 95, 97, 98, 100, 102, 103, 104, 109, 110, 111, 112, 114, 115, 118, 122, 125, 137, 138, 140, 143, 144, 146, 148, 150, 158, 161, 168, 169, 170, 172], "visit": [2, 6, 7, 8, 9, 10, 12, 13, 14, 28, 41, 67, 72, 73, 75, 76, 77, 78, 83, 128, 158], "dem": [2, 3, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 17, 67, 68, 81, 97, 110, 119, 122, 124, 125, 127, 129, 131, 137, 140, 141, 143, 151, 167], "detail": [2, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 29, 31, 34, 35, 39, 40, 44, 47, 48, 53, 54, 56, 59, 61, 64, 67, 68, 71, 72, 73, 74, 75, 76, 77, 78, 84, 90, 95, 100, 101, 104, 107, 109, 114, 118, 137, 138, 143, 148, 150, 154, 155, 158, 170, 171, 172], "concept": [2, 6, 7, 8, 9, 10, 12, 13, 14, 20, 72, 73, 75, 76, 77, 78, 105, 144], "mean": [2, 6, 7, 8, 9, 10, 12, 13, 14, 15, 18, 19, 20, 21, 22, 26, 27, 48, 56, 61, 67, 68, 72, 73, 74, 75, 76, 77, 78, 87, 99, 100, 102, 105, 122, 123, 126, 128, 137, 143, 148, 150, 158, 159, 168, 172], "pyvista": [2, 7, 9, 10, 18, 20, 73, 74, 81, 173], "lethe_pyvista_tool": [2, 7, 10, 15, 34, 35, 44, 47, 54, 78], "paraview": [2, 9, 18, 19, 20, 22, 23, 25, 26, 27, 28, 30, 31, 36, 48, 51, 71, 73, 74, 75, 78, 80, 81, 112, 126, 137, 173], "mention": [2, 3, 5, 6, 7, 12, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28, 29, 30, 31, 33, 34, 35, 36, 37, 41, 43, 44, 45, 46, 47, 48, 49, 51, 54, 55, 56, 58, 59, 60, 61, 64, 68, 70, 72, 73, 74, 75, 76, 77, 78, 104, 139, 146], "below": [2, 3, 5, 7, 12, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28, 29, 30, 31, 33, 34, 35, 36, 37, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 59, 60, 61, 64, 68, 70, 72, 73, 74, 75, 76, 77, 78, 83, 84, 91, 93, 95, 101, 102, 103, 105, 108, 109, 118, 125, 137, 140, 144, 146, 168, 169, 170], "": [2, 3, 5, 6, 7, 9, 10, 12, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 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35, 37, 40, 41, 43, 46, 48, 61, 63, 71, 74, 101, 128, 169], "rest": [2, 9, 15, 16, 19, 20, 24, 33, 48, 54, 67, 68, 70, 73, 75, 76, 83, 100, 122, 137], "air": [2, 21, 24, 33, 37, 44, 47, 48, 52, 54, 73, 74, 75, 76, 77, 93, 101, 109, 118], "acceler": [2, 8, 9, 27, 33, 35, 37, 41, 43, 45, 46, 47, 67, 68, 72, 73, 75, 76, 123, 148, 158], "due": [2, 9, 12, 14, 18, 19, 21, 23, 26, 27, 33, 36, 37, 40, 44, 56, 61, 67, 68, 78, 90, 101, 109, 137, 138, 144, 146, 148, 150], "graviti": [2, 7, 9, 33, 34, 35, 37, 41, 43, 44, 46, 54, 67, 68, 72, 74, 77, 137, 150], "upon": [2, 9, 59, 70, 119], "reach": [2, 7, 9, 12, 18, 20, 21, 23, 26, 27, 29, 43, 48, 53, 56, 58, 61, 68, 71, 74, 78, 87, 97, 100, 102, 106, 108, 112, 119, 122, 137], "outer": [2, 9, 22, 23, 29, 31, 36, 92, 104, 137, 169, 170], "limit": [2, 3, 26, 28, 29, 35, 51, 53, 61, 67, 68, 71, 73, 75, 77, 105, 108, 112, 118, 122, 133, 137, 146, 150, 161, 171], "domain": [2, 5, 9, 10, 12, 13, 15, 16, 18, 19, 20, 21, 22, 23, 24, 26, 27, 28, 29, 30, 31, 34, 35, 36, 37, 39, 40, 41, 43, 45, 46, 48, 49, 54, 55, 56, 61, 62, 67, 68, 71, 74, 88, 89, 90, 91, 95, 97, 100, 101, 102, 105, 107, 110, 112, 113, 119, 120, 122, 125, 126, 137, 144, 146, 155, 156, 161, 162, 169, 170], "wall": [2, 3, 5, 6, 8, 9, 12, 13, 15, 16, 18, 19, 20, 21, 25, 26, 27, 28, 29, 30, 31, 36, 41, 43, 45, 46, 49, 51, 53, 56, 67, 68, 72, 90, 99, 115, 119, 120, 122, 123, 124, 125, 128, 132, 137, 148, 150, 170], "contact": [2, 5, 7, 8, 9, 10, 12, 13, 14, 16, 19, 35, 56, 68, 72, 73, 74, 75, 76, 77, 78, 91, 120, 124, 126, 137, 138, 146, 150], "stop": [2, 5, 9, 18, 20, 26, 43, 61, 67, 68, 74, 102, 106, 107, 108, 112, 118, 137], "leav": [2, 9, 14, 90, 91, 100, 119, 122, 125, 168, 170], "triangul": [2, 8, 9, 13, 19, 27, 29, 103, 105, 107, 111, 115, 119, 120, 122, 125, 140], "valu": [2, 5, 7, 9, 10, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 33, 34, 35, 36, 37, 41, 43, 44, 45, 46, 47, 48, 49, 53, 54, 55, 56, 58, 61, 62, 64, 67, 68, 73, 74, 75, 77, 78, 89, 90, 91, 93, 95, 97, 99, 100, 101, 102, 105, 107, 108, 109, 110, 112, 113, 114, 115, 116, 117, 122, 123, 125, 126, 129, 131, 132, 133, 134, 136, 137, 138, 140, 146, 148, 150, 155, 156, 158, 159, 161, 168], "constant": [2, 3, 9, 10, 19, 20, 22, 23, 25, 29, 31, 34, 35, 39, 40, 41, 44, 45, 46, 48, 49, 53, 54, 56, 61, 62, 67, 68, 74, 78, 89, 90, 91, 93, 101, 104, 105, 109, 112, 113, 118, 123, 127, 137, 138, 159, 160, 162, 168], "restitut": [2, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 16, 68, 72, 73, 74, 75, 76, 77, 78, 123, 137, 148], "coeffici": [2, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 16, 19, 21, 22, 25, 26, 27, 35, 39, 40, 41, 43, 44, 46, 48, 49, 53, 55, 56, 58, 62, 68, 71, 72, 73, 74, 75, 76, 77, 78, 91, 93, 97, 109, 118, 123, 125, 132, 134, 136, 137, 138, 144, 146, 148, 162], "lose": [2, 9], "some": [2, 18, 20, 21, 22, 24, 25, 27, 31, 67, 72, 74, 78, 80, 84, 90, 97, 102, 104, 109, 112, 114, 116, 125, 137, 143, 144, 150, 159, 169, 170, 174], "kinet": [2, 9, 30, 31, 110, 138], "energi": [2, 9, 30, 31, 36, 61, 78, 107, 109, 110, 123, 136, 138, 144, 146, 148, 162], "height": [2, 5, 7, 18, 23, 24, 26, 27, 28, 29, 33, 35, 37, 40, 46, 47, 54, 55, 56, 58, 72, 74, 78, 96, 136, 137], "next": [2, 8, 15, 18, 27, 28, 29, 36, 49, 55, 56, 59, 70, 74, 84, 104, 108, 122, 133, 170, 171], "decreas": [2, 9, 15, 22, 24, 28, 30, 35, 36, 44, 48, 49, 56, 61, 71, 106, 108, 114, 125], "until": [2, 10, 18, 21, 26, 48, 49, 56, 58, 67, 68, 108, 118, 137], "come": [2, 27, 36, 51, 56, 73, 75, 76, 80, 86, 95, 114, 154], "grid": [2, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 16, 20, 21, 22, 23, 27, 29, 30, 31, 34, 35, 37, 40, 44, 45, 46, 47, 48, 49, 51, 53, 54, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 78, 90, 92, 97, 102, 104, 107, 126, 133, 158, 170], "hyper_cub": [2, 7, 13, 20, 30, 34, 54, 104], "Its": [2, 7, 13, 22, 41, 45, 93, 109, 144], "dimens": [2, 7, 8, 9, 13, 19, 20, 21, 22, 26, 28, 29, 33, 34, 35, 37, 39, 40, 41, 43, 44, 46, 47, 48, 54, 58, 61, 62, 70, 71, 96, 103, 107, 109, 120, 122, 132, 143, 170], "m": [2, 5, 7, 12, 13, 16, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 33, 35, 39, 40, 44, 46, 47, 48, 59, 60, 67, 71, 73, 74, 75, 76, 77, 78, 90, 93, 96, 97, 102, 107, 109, 110, 122, 136, 138, 141, 142, 144, 146, 148, 150, 158, 159, 167, 168, 171], "everi": [2, 5, 7, 9, 12, 13, 16, 18, 22, 23, 27, 28, 29, 30, 31, 36, 43, 45, 46, 49, 67, 68, 73, 75, 76, 86, 92, 99, 102, 103, 105, 108, 110, 111, 115, 122, 123, 125, 128, 133, 137, 140, 158, 168, 170], "direct": [2, 7, 8, 9, 10, 12, 13, 18, 19, 20, 21, 22, 23, 24, 26, 27, 28, 30, 31, 37, 39, 40, 41, 43, 45, 46, 47, 48, 49, 53, 56, 58, 59, 61, 64, 67, 68, 70, 71, 73, 74, 75, 78, 90, 91, 97, 101, 102, 103, 107, 119, 121, 122, 123, 128, 133, 137, 146, 148, 158, 168, 170], "sinc": [2, 5, 7, 8, 9, 10, 15, 18, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31, 34, 35, 36, 37, 43, 46, 48, 49, 51, 56, 58, 62, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 82, 83, 86, 90, 92, 104, 109, 110, 112, 115, 122, 125, 133, 134, 137, 138, 143, 146, 148, 150, 155, 156, 158, 160], 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"end": [2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 82, 83, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 132, 133, 134, 136, 137, 138, 140, 144, 146, 148, 154, 155, 156, 158, 161, 168, 169, 170], "done": [2, 3, 7, 18, 21, 29, 33, 34, 35, 37, 44, 46, 47, 49, 51, 54, 55, 58, 67, 68, 70, 73, 74, 75, 76, 78, 85, 86, 87, 97, 105, 106, 111, 122, 125, 137, 143, 146, 150, 158, 161, 168, 169, 170, 171], "frequenc": [2, 3, 5, 7, 8, 9, 10, 12, 13, 14, 16, 18, 19, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 44, 45, 46, 47, 48, 49, 53, 54, 61, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 99, 105, 110, 111, 112, 115, 118, 120, 122, 125, 126, 127, 137, 138, 154], "ani": [2, 7, 10, 15, 18, 19, 22, 23, 26, 28, 43, 47, 48, 49, 53, 56, 60, 67, 68, 70, 72, 74, 82, 84, 86, 87, 92, 93, 102, 103, 107, 114, 118, 122, 128, 132, 133, 134, 136, 138, 150, 154, 158, 159, 168, 169, 172], "re": [2, 7, 21, 24, 25, 27, 29, 31, 33, 45, 47, 55, 56, 58, 71, 84, 90, 107, 108, 109, 134, 141, 142, 143, 150, 154], "center": [2, 6, 7, 8, 9, 15, 19, 22, 23, 28, 29, 34, 35, 36, 41, 48, 54, 55, 56, 58, 59, 61, 62, 67, 68, 70, 71, 72, 73, 74, 75, 76, 90, 103, 107, 119, 128, 132, 135, 137, 140, 141, 142, 169], "y": [2, 7, 8, 9, 10, 14, 15, 18, 19, 20, 21, 22, 23, 27, 28, 29, 30, 31, 33, 34, 35, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 53, 55, 59, 64, 67, 70, 73, 74, 75, 76, 77, 78, 83, 86, 87, 89, 90, 91, 97, 100, 101, 103, 107, 113, 117, 119, 121, 122, 123, 126, 128, 137, 140, 146, 148, 150, 158, 167, 169, 170], "10000": [2, 5, 7, 8, 9, 14, 16, 18, 21, 27, 41, 43, 55, 58, 61, 73, 74, 75, 76, 78, 122, 125, 127], "z": 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67, 68, 70, 74, 76, 82, 83, 86, 87, 88, 90, 91, 99, 102, 107, 110, 112, 117, 119, 127, 137, 138, 148, 150, 158, 159, 169, 171], "gov": [2, 7], "vvuq": [2, 7], "main": [2, 7, 10, 15, 23, 55, 61, 70, 74, 81, 84, 97, 102, 122, 128, 137, 143, 158, 162, 168], "html": [2, 7, 43, 83], "02": [2, 13, 18, 21, 22, 25, 26, 29, 33, 49, 74, 75, 118, 168], "access": [2, 7, 15, 33, 43, 49, 84, 97, 112, 113, 167, 169, 170, 171, 172], "jun": [2, 28, 31, 35, 40, 46, 48, 138, 146], "8": [2, 3, 5, 6, 8, 10, 12, 14, 16, 19, 20, 21, 22, 24, 25, 26, 29, 30, 31, 33, 34, 36, 39, 41, 43, 44, 45, 46, 47, 48, 54, 56, 59, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 83, 101, 105, 115, 125, 137, 138, 148, 167, 169], "2023": [2, 7, 29, 30, 49, 55, 78, 81, 97, 109, 142, 148, 150, 167], "motion": [3, 5, 6, 12, 20, 22, 29, 35, 36, 41, 62, 67, 68, 93, 107, 119, 120, 125, 128, 137, 146, 150], "within": [3, 9, 16, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30, 31, 36, 41, 43, 45, 46, 49, 51, 53, 55, 56, 58, 61, 72, 73, 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19, 20, 21, 24, 25, 26, 28, 29, 33, 36, 59, 70, 74, 76, 77, 81, 103, 104, 105, 107, 115, 128, 133, 137, 143, 168, 170, 173], "low": [3, 7, 20, 22, 23, 30, 33, 51, 59, 61, 67, 68, 72, 102, 108, 112, 125, 144, 148, 150, 170], "poli": 3, "msh": [3, 5, 6, 10, 14, 18, 19, 21, 24, 25, 26, 28, 29, 33, 36, 51, 74, 76, 77, 80, 83, 104, 133, 143, 168, 169, 170], "correspond": [3, 9, 10, 15, 19, 21, 22, 23, 25, 27, 28, 29, 35, 36, 37, 39, 40, 44, 45, 46, 49, 55, 58, 68, 74, 83, 87, 93, 97, 100, 103, 107, 109, 115, 118, 123, 126, 137, 143, 144, 146, 148, 158, 170], "stl": [3, 137], "two": [3, 5, 6, 7, 8, 9, 10, 12, 14, 15, 16, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31, 33, 35, 36, 37, 40, 41, 43, 45, 46, 47, 48, 49, 51, 53, 56, 58, 59, 61, 62, 67, 68, 70, 72, 78, 82, 84, 87, 90, 91, 93, 97, 98, 101, 102, 103, 105, 106, 110, 113, 114, 117, 118, 119, 120, 122, 124, 125, 131, 135, 137, 139, 140, 143, 144, 146, 148, 150, 155, 156, 158, 159, 160, 161, 167, 169, 170, 172], "stage": [3, 5, 6, 10, 14, 16, 121], "75": [3, 8, 9, 44, 45, 54, 61, 67, 70, 71, 72, 74, 76, 122, 138], "deal": [3, 5, 9, 12, 16, 19, 20, 21, 22, 23, 24, 29, 30, 31, 51, 53, 67, 68, 71, 72, 73, 74, 81, 90, 102, 103, 104, 105, 108, 122, 129, 130, 133, 142, 143, 158, 161, 167, 169, 170, 172], "ii": [3, 5, 9, 12, 16, 18, 19, 20, 22, 23, 24, 29, 30, 31, 51, 53, 56, 67, 68, 71, 72, 73, 74, 81, 90, 102, 103, 104, 105, 108, 133, 142, 143, 150, 158, 161, 167, 169, 170], "balanc": [3, 5, 8, 9, 10, 11, 12, 14, 16, 74, 75, 76, 78, 126, 141, 142, 148, 159, 167, 171], "25": [3, 7, 18, 21, 22, 23, 28, 34, 36, 43, 44, 45, 46, 47, 54, 61, 64, 68, 70, 72, 74, 76, 77, 105, 107, 115, 137, 138, 140, 169, 170], "just": [3, 15, 61, 84, 109, 122, 168, 170, 172], "mechan": [3, 19, 20, 23, 30, 44, 98, 101, 106, 115, 118, 125, 131, 138, 141, 142, 161], "rectangular": [3, 5, 33, 35, 37, 40, 43, 46, 52, 62, 67, 68, 72, 76, 126, 169, 170], "box": [3, 5, 8, 9, 10, 12, 14, 16, 21, 33, 58, 67, 68, 71, 72, 73, 75, 76, 77, 78, 93, 94, 102, 118, 120, 122, 137, 158, 169, 170], "rapid": [3, 56, 161], "veloc": [3, 5, 6, 7, 9, 11, 12, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 30, 31, 34, 35, 36, 37, 41, 43, 44, 48, 51, 53, 54, 59, 60, 61, 62, 64, 67, 68, 71, 72, 73, 75, 76, 77, 78, 88, 89, 90, 93, 94, 95, 97, 98, 100, 105, 106, 109, 110, 114, 119, 122, 125, 126, 128, 137, 138, 144, 146, 150, 156, 159, 161, 162, 168], "offset": [3, 5, 8, 9, 10, 12, 13, 14, 16, 72, 73, 74, 75, 76, 77, 78, 122, 137, 170], "so": [3, 15, 18, 21, 24, 26, 27, 28, 29, 30, 35, 46, 53, 56, 58, 61, 67, 68, 70, 72, 73, 74, 75, 76, 77, 78, 82, 83, 84, 86, 87, 91, 92, 107, 109, 111, 118, 122, 134, 143, 146, 148, 150, 155, 158, 168, 169, 170, 171, 172, 174], "exactli": [3, 23, 75, 76, 78, 90, 170, 172], "step": [3, 5, 8, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 58, 59, 61, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 81, 83, 84, 86, 97, 100, 102, 105, 106, 107, 108, 111, 112, 115, 118, 120, 122, 125, 126, 127, 128, 137, 138, 143, 146, 148, 150, 158, 161, 168, 169, 170, 171], "200": [3, 18, 25, 29, 30, 41, 47, 56, 72, 75, 102, 158, 169, 171], "4000": [3, 7, 13, 31], "point": [3, 5, 8, 9, 10, 12, 13, 14, 15, 16, 18, 19, 20, 22, 27, 28, 29, 37, 39, 40, 41, 44, 45, 46, 49, 55, 56, 58, 67, 68, 70, 72, 73, 74, 75, 76, 77, 78, 82, 91, 93, 101, 103, 107, 108, 111, 118, 119, 121, 122, 132, 135, 136, 137, 140, 146, 148, 156, 158, 169, 170, 171], "025": [3, 5, 12, 15, 30, 47, 59, 68, 72], "vector": [3, 10, 12, 14, 16, 18, 19, 21, 28, 29, 30, 31, 56, 64, 67, 68, 72, 73, 74, 75, 76, 77, 78, 90, 91, 93, 102, 103, 110, 118, 119, 121, 122, 123, 137, 146, 148, 150, 155, 156, 158, 159, 162, 170], "prn": [3, 5, 8, 9, 10, 12, 13, 14, 16, 72, 73, 74, 75, 76, 77, 78, 122, 123], "seed": [3, 5, 8, 9, 10, 12, 13, 14, 16, 55, 56, 58, 72, 73, 74, 75, 76, 77, 78, 122, 123, 136], "19": [3, 5, 8, 9, 12, 13, 14, 16, 49, 51, 72, 73, 74, 75, 76, 77, 78, 122, 148], "total": [3, 10, 14, 27, 29, 30, 31, 36, 37, 55, 56, 58, 61, 67, 68, 73, 75, 76, 99, 103, 105, 110, 112, 115, 119, 121, 123, 125, 128, 132, 133, 136, 148, 150], "8000": [3, 16, 74], "mm": [3, 10, 24, 28, 36, 76, 77, 78, 83, 143], "rel": [3, 5, 18, 19, 20, 21, 23, 25, 27, 28, 29, 30, 35, 43, 47, 49, 55, 62, 67, 68, 70, 72, 73, 75, 76, 77, 78, 83, 84, 102, 105, 114, 115, 133, 137, 143, 158, 159], "overlap": [3, 9, 15, 28, 102, 122, 137, 148], "suffici": [3, 14, 23, 26, 30, 46, 48, 49, 62, 67, 68, 106, 107, 108], "jump": [3, 9, 15, 125], "through": [3, 15, 21, 25, 27, 29, 30, 36, 37, 44, 49, 50, 53, 54, 55, 58, 59, 60, 61, 64, 73, 74, 76, 77, 81, 82, 85, 90, 100, 106, 107, 108, 118, 126, 133, 137, 138, 148, 150, 158, 169, 170], "01": [3, 5, 13, 18, 21, 22, 23, 24, 25, 26, 30, 34, 35, 37, 40, 41, 43, 45, 46, 47, 49, 51, 53, 54, 55, 58, 61, 73, 74, 99, 101], "2560": [3, 5], "1e7": [3, 12, 74, 78], "roll": [3, 5, 7, 9, 10, 12, 13, 16, 72, 73, 74, 75, 76, 77, 78, 123, 125, 137, 150], "5e": [3, 5, 16, 35, 74], "log": [3, 5, 8, 9, 10, 12, 13, 14, 16, 22, 23, 28, 30, 31, 61, 72, 73, 74, 75, 76, 78, 83, 109, 112, 127, 169, 171], "1000": [3, 8, 9, 10, 12, 13, 14, 20, 21, 24, 26, 27, 33, 34, 37, 46, 54, 59, 60, 67, 68, 72, 73, 74, 75, 76, 102, 107, 110, 123, 125, 127, 137], "output": [3, 5, 8, 9, 10, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 59, 61, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 83, 84, 86, 87, 89, 99, 107, 108, 110, 111, 112, 115, 118, 126, 127, 128, 137, 138, 143, 168], "path": [3, 5, 9, 10, 12, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 61, 72, 73, 74, 75, 76, 77, 78, 80, 83, 86, 101, 103, 111, 112, 127, 148, 168, 169, 170, 172], "true": [3, 5, 6, 8, 9, 10, 11, 12, 14, 15, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 56, 58, 59, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 88, 89, 90, 91, 92, 93, 95, 97, 99, 100, 101, 102, 104, 106, 107, 108, 109, 110, 111, 112, 113, 114, 118, 127, 128, 129, 133, 134, 136, 137, 138, 140], "back": [3, 31, 56, 87, 150], "forth": [3, 30], "surfac": [3, 5, 6, 19, 21, 22, 26, 27, 28, 29, 31, 34, 35, 36, 39, 40, 44, 46, 47, 51, 56, 59, 61, 74, 100, 101, 104, 105, 106, 110, 120, 123, 128, 137, 144, 148, 156, 169], "translat": [3, 5, 6, 12, 61, 107, 119, 120, 122, 128, 137, 170], "along": [3, 10, 15, 19, 20, 23, 26, 27, 29, 33, 36, 37, 40, 46, 47, 53, 61, 64, 67, 68, 70, 71, 72, 78, 87, 103, 107, 108, 112, 119, 133, 137, 146, 158, 170, 172], "axi": [3, 10, 12, 15, 16, 19, 20, 21, 23, 29, 33, 53, 55, 58, 59, 64, 67, 68, 70, 71, 101, 103, 107, 119, 128, 132, 133, 135, 137, 170], "rotat": [3, 6, 22, 23, 29, 31, 59, 60, 61, 64, 90, 107, 119, 120, 122, 128, 137, 138, 168, 170, 172], "angular": [3, 5, 6, 7, 15, 22, 23, 28, 29, 31, 35, 59, 64, 117, 122, 128, 137, 138, 148, 150, 154], "fulli": [3, 18, 31, 74, 75, 76, 78, 90, 109, 137, 143, 167], "parametr": [3, 5, 9, 20, 109], "input": [3, 5, 16, 18, 19, 24, 61, 64, 68, 111, 122, 137, 171], "parser": [3, 170], "simplex": [3, 5, 6, 28, 29, 49, 50, 74, 98, 104, 106, 107, 128], "angl": [3, 5, 7, 10, 21, 24, 29, 56, 58, 64, 70, 72, 74, 91, 101, 128, 136, 137, 169, 170], "5708": 3, "pi": [3, 23, 28, 29, 30, 31, 34, 35, 39, 40, 44, 45, 47, 49, 59, 64, 89, 101, 113, 127, 137, 138, 140, 148, 169], "05": [3, 6, 7, 8, 9, 13, 16, 20, 23, 24, 25, 26, 27, 28, 30, 33, 34, 35, 44, 53, 54, 55, 59, 67, 70, 74, 75, 76, 77, 78, 102, 105, 109, 122, 138, 150], "035": [3, 78], "27": [3, 18, 28, 49, 148], "sin": [3, 23, 29, 30, 31, 34, 44, 47, 64, 72, 89, 113, 140], "1416": [3, 47], "31": [3, 70, 76], "42": [3, 70, 71, 168], "mpirun": [3, 5, 6, 8, 10, 12, 14, 16, 18, 21, 24, 25, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 54, 61, 72, 73, 74, 75, 76, 77, 78, 83, 143, 168], "np": [3, 5, 6, 8, 10, 12, 14, 15, 16, 18, 21, 24, 25, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 54, 61, 64, 72, 73, 74, 75, 76, 77, 78, 83, 168], "wherea": [3, 9, 20, 22, 28, 29, 47, 53, 80, 90, 98, 105, 109, 143], "granular": [3, 11, 16, 28, 74, 125, 126, 138, 167], "matter": [3, 31, 154, 167], "There": [3, 6, 9, 26, 27, 44, 82, 84, 93, 99, 102, 114, 119, 124, 125, 137, 150, 158, 167, 172], "much": [3, 18, 20, 21, 26, 29, 53, 56, 67, 68, 70, 71, 82, 86, 90, 99, 102, 107, 108, 137, 138, 160, 168, 169, 171], "sai": [3, 21, 114, 168], "entireti": [3, 18], "difficult": [3, 18, 26, 47, 51, 61, 105], "mighti": 3, "circumst": 3, "half": [3, 9, 12, 15, 16, 26, 29, 36, 54, 56, 59, 70, 73, 75, 78, 107, 123, 137, 148, 170], "clip": 3, "clearli": [3, 18, 19, 29, 72, 103, 167], "finer": [3, 22, 23, 26, 27, 29, 30, 31, 61, 68, 92, 107, 109, 169], "affect": [3, 15, 45, 49, 53, 56, 72, 82, 99, 101, 104, 110, 113, 118, 137, 150, 158], "altern": [3, 20, 24, 31, 59, 87, 105, 114, 137, 169, 172], "although": [3, 9, 20, 23, 29, 49, 61, 73, 83, 100, 159, 169], "believ": 3, "amaz": 3, "fan": [3, 169], "mustelida": 3, "otter": 3, "chinchillida": 3, "chinchilla": 3, "even": [3, 15, 18, 20, 22, 24, 29, 30, 31, 35, 49, 56, 82, 84, 87, 90, 100, 102, 105, 107, 108, 137, 148, 150, 154, 168, 171, 172], "viscacha": 3, "replac": [3, 19, 28, 58, 64, 82, 84, 103, 155, 158, 168], "favorit": 3, "send": [3, 168], "gmail": 3, "com": [3, 61, 82, 83, 86, 87, 97, 174], "organ": [4, 79, 137], "exampl": [4, 79, 81, 83, 84, 89, 90, 91, 92, 95, 96, 100, 105, 106, 108, 109, 112, 115, 119, 120, 122, 123, 124, 126, 128, 134, 135, 137, 138, 144, 146, 150, 158, 168, 169, 170, 171, 172, 174], "simplest": [4, 109, 143], "complic": 4, "dry": [5, 16, 109, 138], "materi": [5, 7, 28, 35, 40, 41, 44, 46, 48, 56, 58, 118, 137, 148, 167], "dimension": [5, 8, 9, 16, 21, 24, 39, 40, 41, 43, 46, 47, 48, 72, 73, 74, 75, 76, 77, 78, 94, 101, 120, 144, 158, 170], "load": [5, 8, 10, 11, 12, 14, 16, 18, 24, 51, 68, 75, 76, 78, 83, 86, 111, 122, 126, 137, 141, 142, 148, 162, 167, 168, 169, 171], "geometri": [5, 8, 9, 10, 12, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 33, 36, 37, 39, 40, 41, 43, 46, 48, 49, 55, 56, 58, 59, 61, 62, 64, 70, 71, 74, 75, 76, 77, 78, 100, 103, 104, 107, 124, 133, 137, 150], "squar": [5, 20, 21, 22, 34, 35, 37, 40, 46, 48, 54, 55, 73, 74, 75, 76, 77, 78, 80, 104, 109, 114, 169, 170], "40cm": 5, "powder": [5, 7, 14, 28, 40, 74, 78, 101, 138, 141, 148], "pack": [5, 6, 10, 12, 14, 15, 72, 74, 75, 76, 77, 78, 79, 138, 148, 150], "behind": [5, 19, 25, 37, 103, 143, 148, 150], "sluic": 5, "gate": [5, 33], "rise": [5, 29, 47, 48, 52, 118, 146], "abl": [5, 9, 18, 20, 30, 33, 41, 58, 73, 105, 171], "freeli": 5, "produc": [5, 19, 22, 23, 59, 60, 70, 107, 137, 169], "those": [5, 7, 20, 21, 67, 68, 74, 84, 102, 104, 109, 137, 144, 146, 169, 171, 172], "evangelista": 5, "computation": [5, 9, 30, 31, 67, 68, 137], "effici": [5, 14, 29, 30, 31, 56, 58, 81, 82, 84, 90, 91, 102, 107, 132, 136, 158], "up": [5, 7, 9, 10, 14, 18, 20, 27, 28, 29, 30, 31, 38, 44, 61, 68, 73, 74, 75, 76, 78, 84, 87, 91, 97, 100, 102, 105, 106, 107, 115, 117, 168, 171], "sand": 5, "6mm": 5, "10mm": 5, "reduc": [5, 10, 21, 25, 27, 30, 41, 58, 68, 73, 74, 75, 84, 97, 99, 102, 103, 105, 108, 112, 126, 137, 158, 161], "factor": [5, 9, 10, 20, 22, 24, 30, 31, 33, 35, 39, 40, 45, 46, 48, 56, 58, 59, 61, 62, 64, 67, 68, 70, 71, 73, 74, 75, 78, 90, 100, 101, 103, 109, 112, 114, 118, 125, 137, 140, 144, 146, 169], "approxim": [5, 6, 12, 14, 16, 22, 30, 35, 41, 43, 54, 55, 56, 61, 70, 74, 75, 76, 77, 78, 103, 106, 109, 137, 138, 144, 146, 148, 150, 156, 158, 161], "250x": 5, "b1": 5, "length": [5, 12, 15, 16, 21, 24, 26, 27, 31, 34, 35, 36, 37, 40, 41, 43, 44, 46, 48, 54, 55, 56, 58, 59, 60, 61, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 93, 96, 100, 101, 104, 109, 123, 132, 137, 138, 140, 144, 150, 159, 161, 169, 170], "60cm": 5, "20cm": 5, "b3": 5, "times0": 5, "meter": [5, 36, 59, 60, 96, 107, 159], "made": [5, 7, 9, 20, 22, 23, 30, 31, 36, 45, 51, 53, 67, 70, 78, 96, 104, 112, 137, 143, 154, 159, 169, 170], "subdivided_hyper_rectangl": [5, 35, 37, 40, 44, 45, 46, 47, 49, 61, 62, 64, 67, 68, 70, 71, 72, 75, 92], "mono": [5, 16], "dispers": [5, 16, 116], "005": [5, 7, 8, 9, 18, 25, 40, 45, 48, 54, 72, 74, 76, 77, 133], "kg": [5, 12, 16, 28, 33, 59, 60, 67, 68, 74, 78], "respect": [5, 12, 14, 15, 16, 19, 21, 22, 23, 25, 26, 28, 31, 33, 34, 35, 37, 39, 40, 41, 43, 44, 46, 48, 54, 55, 56, 59, 64, 72, 76, 78, 90, 93, 99, 101, 103, 105, 109, 110, 118, 122, 125, 131, 137, 138, 146, 150, 156, 158, 159, 161], "60k": 5, "2m": 5, "match": [5, 21, 30, 31, 44, 90, 107, 170], "experi": [5, 7, 12, 14, 26, 27, 28, 29, 33, 37, 41, 55, 61, 67, 68, 84, 138], "import": [5, 7, 9, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 53, 58, 64, 67, 68, 73, 74, 75, 76, 78, 97, 105, 115, 133, 137, 140, 150, 158, 167, 168, 170], "final": [5, 9, 12, 18, 19, 20, 21, 22, 23, 26, 29, 30, 31, 36, 46, 48, 49, 56, 59, 61, 67, 68, 70, 72, 73, 74, 75, 76, 87, 90, 109, 118, 144, 148, 155, 158, 167, 168, 169, 170], "repos": 5, "well": [5, 9, 18, 20, 21, 22, 23, 25, 26, 27, 28, 30, 31, 36, 39, 40, 41, 51, 59, 61, 70, 73, 74, 75, 76, 77, 82, 84, 86, 87, 89, 111, 137, 139, 142, 144, 146, 155, 158, 161, 167], "speed": [5, 7, 12, 15, 16, 24, 27, 28, 40, 61, 64, 68, 74, 75, 78, 83, 97, 105, 119, 158, 172], "progress": [5, 9, 18, 23, 26, 61, 73, 75, 76, 102, 108, 118, 169], "spheric": [5, 7, 9, 10, 14, 19, 33, 71, 75, 76, 77, 78, 103, 125, 137, 138, 141, 142, 146, 148], "choos": [5, 9, 12, 14, 16, 18, 26, 27, 31, 33, 34, 35, 39, 44, 45, 46, 48, 61, 67, 68, 72, 73, 74, 75, 76, 78, 82, 86, 102, 108, 122, 133, 138, 140, 148, 155, 158, 169, 170], "60000": 5, "1e6": [5, 6, 10, 18, 56, 58, 72, 73, 74, 112], "frequent": [5, 10, 12, 14, 16, 137, 150, 158], "divis": [5, 61, 112, 140, 169], "amongst": [5, 104, 125], 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67, 68, 72, 73, 74, 75, 76, 78, 102, 108, 125, 137, 148, 161], "integr": [5, 7, 8, 9, 10, 12, 13, 14, 16, 24, 25, 29, 30, 31, 33, 34, 35, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 53, 54, 56, 59, 61, 62, 64, 67, 68, 72, 73, 74, 75, 76, 78, 110, 112, 137, 143, 144, 146, 155, 156, 162], "velocity_verlet": [5, 7, 8, 9, 10, 12, 13, 14, 16, 72, 73, 74, 75, 76, 78, 125], "insid": [5, 9, 10, 12, 13, 14, 15, 16, 21, 22, 29, 41, 43, 46, 55, 56, 58, 59, 61, 62, 64, 67, 68, 70, 71, 73, 75, 76, 77, 78, 80, 84, 87, 92, 102, 107, 110, 122, 124, 132, 135, 136, 137, 150, 170], "60": [5, 16, 24, 31, 46, 71, 150, 167], "000": [5, 12, 26, 37, 43, 75, 77, 84], "note": [5, 6, 7, 8, 15, 16, 18, 20, 21, 22, 23, 26, 28, 30, 31, 33, 36, 41, 43, 44, 45, 49, 67, 74, 77, 78, 87, 95, 110, 119, 125, 128, 137, 148, 150, 154, 155, 162, 168, 171], "sure": [5, 16, 28, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 53, 54, 73, 75, 76, 83, 109, 168, 169, 170], "otherwis": [5, 9, 16, 24, 28, 36, 61, 73, 83, 86, 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116, 128, 131, 137, 139, 143, 159, 168, 169], "present": [6, 7, 9, 10, 15, 18, 19, 21, 25, 27, 29, 30, 31, 33, 34, 35, 37, 43, 44, 47, 48, 49, 54, 56, 61, 64, 70, 74, 78, 80, 93, 98, 101, 102, 122, 143, 146, 150, 154, 155, 161, 168, 170], "support": [6, 9, 19, 20, 23, 25, 26, 41, 71, 73, 82, 83, 86, 88, 90, 93, 102, 103, 108, 109, 117, 118, 119, 120, 125, 127, 128, 137, 146, 148, 150, 158, 160, 167], "quadrilater": [6, 18, 49, 170], "1d": [6, 49, 51, 107, 144, 169, 170], "specifi": [6, 7, 9, 10, 12, 13, 14, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 35, 36, 41, 44, 45, 46, 48, 49, 51, 55, 56, 58, 61, 67, 68, 72, 73, 74, 75, 76, 77, 78, 80, 82, 83, 86, 87, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 102, 103, 104, 105, 107, 108, 109, 111, 112, 114, 117, 118, 119, 121, 122, 123, 127, 128, 133, 140, 150, 158, 159, 168, 169, 170, 171, 172], "hour": [6, 10, 12, 14, 25, 30, 33, 40, 41, 47, 67, 74, 77, 78, 84, 87], "carri": [6, 9, 18, 20, 26, 49, 53, 72, 73, 74, 75, 76, 77, 78, 108, 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64, 89, 100, 110, 118, 122, 137, 138, 144, 146, 148, 150, 154, 155, 156, 161, 162], "disabl": [7, 22, 31, 53, 72, 73, 74, 75, 76, 86, 95, 113, 115, 125, 134, 137, 138, 140], "slide": [7, 128, 148], "380e9": 7, "23": [7, 19, 83, 141, 142], "092": 7, "70e9": 7, "base": [7, 9, 10, 15, 16, 18, 21, 26, 27, 31, 39, 46, 48, 55, 56, 61, 62, 64, 67, 68, 72, 74, 75, 76, 78, 81, 97, 101, 107, 123, 126, 137, 144, 146, 148, 158, 161, 167, 172], "law": [7, 22, 23, 34, 54, 71, 91, 101, 141, 142, 150, 155, 160], "perfectli": [7, 44, 53, 122, 168], "no_resist": [7, 125], "34": [7, 34, 54, 70], "run_oblique_impact_": 7, "suffix": [7, 99, 110, 126], "l": [7, 19, 20, 23, 24, 25, 28, 29, 34, 36, 40, 41, 48, 54, 56, 58, 72, 76, 84, 87, 89, 101, 109, 112, 125, 132, 136, 138, 141, 142, 144, 146, 150, 155, 156, 158, 159, 167, 169, 171], "run_oblique_impact": 7, "sleep": 7, "data": [7, 9, 10, 15, 18, 19, 20, 25, 27, 31, 33, 34, 35, 37, 41, 44, 46, 47, 49, 51, 54, 56, 58, 59, 73, 74, 81, 83, 102, 111, 134, 137, 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73, 75, 76, 78, 82, 93, 105, 128, 131, 134, 143, 158, 172], "part": [8, 9, 10, 15, 18, 20, 21, 23, 26, 27, 29, 30, 31, 35, 37, 44, 55, 60, 61, 67, 68, 70, 74, 77, 84, 103, 106, 137, 141, 142, 144, 148, 156, 162, 167, 169, 170, 171], "becaus": [8, 12, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 39, 49, 56, 59, 61, 62, 67, 68, 71, 74, 78, 97, 102, 103, 108, 118, 125, 144, 146, 156, 158, 160], "hyper_bal": [8, 9, 22, 107], "hollow": [8, 137], "compon": [8, 15, 19, 20, 23, 28, 30, 31, 36, 61, 64, 67, 68, 90, 100, 102, 108, 109, 113, 117, 121, 122, 128, 137, 138, 143, 156, 158, 167], "expand": [8, 9, 10, 12, 16, 72, 74, 76, 77, 78, 124], "concav": [8, 9, 12, 16, 77, 124, 137, 170], "enabl": [8, 11, 12, 14, 16, 19, 20, 22, 23, 25, 27, 28, 29, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 53, 54, 58, 59, 61, 64, 68, 72, 73, 74, 75, 76, 77, 78, 86, 87, 88, 89, 95, 97, 98, 99, 100, 101, 102, 105, 106, 107, 108, 109, 110, 112, 113, 116, 117, 118, 124, 125, 126, 133, 134, 136, 137, 138, 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133, 144, 170], "By": [9, 15, 18, 20, 22, 23, 26, 28, 30, 31, 35, 36, 43, 45, 49, 56, 67, 68, 71, 74, 90, 91, 93, 96, 104, 109, 117, 118, 126, 137, 138, 140, 150, 154, 158, 159, 169, 170], "latter": [9, 29, 48, 61, 93, 109, 158], "receiv": [9, 15, 55, 101, 119], "uniqu": [9, 20, 144, 158], "id": [9, 10, 12, 15, 16, 18, 19, 20, 21, 22, 23, 27, 28, 29, 30, 31, 34, 35, 36, 40, 41, 44, 45, 46, 48, 49, 53, 54, 56, 59, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 83, 84, 90, 91, 95, 97, 99, 103, 104, 107, 109, 110, 112, 118, 119, 129, 137, 169, 170], "constitut": [9, 30, 77, 154, 170], "advanc": [9, 20, 31, 56, 87, 106, 107, 112, 114, 171], "necessari": [9, 10, 14, 15, 18, 20, 22, 27, 28, 29, 55, 56, 58, 59, 61, 62, 67, 73, 80, 90, 100, 105, 109, 112, 115, 137, 155, 158, 161, 169], "curvatur": [9, 21, 23, 27, 46, 48, 56, 118, 137], "instead": [9, 10, 15, 21, 22, 28, 36, 41, 43, 51, 64, 67, 82, 86, 87, 90, 102, 106, 118, 125, 137, 138, 146, 158, 159, 168, 169], "indic": [9, 15, 20, 22, 23, 25, 26, 27, 30, 31, 36, 37, 45, 46, 51, 56, 71, 83, 87, 89, 98, 100, 101, 104, 109, 110, 114, 118, 123, 143, 144, 146, 161, 167, 169, 170], "impli": [9, 20, 22, 23, 30, 31, 155, 171], "divid": [9, 20, 22, 23, 30, 31, 56, 67, 68, 71, 73, 75, 78, 109, 140, 150, 167, 170], "per": [9, 10, 20, 22, 23, 26, 28, 29, 30, 31, 67, 68, 72, 73, 74, 75, 76, 77, 83, 95, 105, 110, 114, 132, 137, 138, 143, 146, 158, 168, 171], "favor": 9, "fine": [9, 18, 23, 31, 62, 102, 125, 148, 158, 168, 169], "sort": [9, 15, 49, 90, 129], "expens": [9, 26, 29, 30, 41, 67, 68, 102, 150, 158], "henc": [9, 11, 14, 23, 26, 37, 40, 41, 43, 45, 49, 61, 71, 78, 102, 113, 119, 143], "equal": [9, 11, 12, 13, 14, 16, 18, 19, 20, 21, 23, 26, 27, 41, 43, 45, 49, 59, 71, 72, 76, 93, 98, 101, 105, 109, 114, 119, 122, 123, 137, 138, 140, 148, 150, 158, 161, 170, 171], "manag": [9, 20, 49, 73, 75, 76, 77, 78, 82, 84, 87, 109, 171], "1000000": [9, 13, 68, 75, 123, 137], "non_uniform": [9, 10], "uniformli": [9, 12, 13, 27, 72], "random": [9, 55, 56, 58, 74, 122, 123, 136], "randomli": [9, 56, 58, 122], "pseudo": [9, 18, 21, 26, 29, 78, 106, 122, 123, 140, 150], "adequ": [9, 25, 30, 31, 34, 35, 44, 46, 47, 54, 62, 67, 68, 95, 114, 122, 125, 144, 158, 159, 169], "arrang": [9, 68, 74, 122], "warn": [9, 122, 127, 169], "fit": [9, 13, 21, 26, 28, 58, 61, 70, 73, 75, 76, 77, 78, 122], "3000": [9, 18], "_p": [9, 122, 138], "ad": [9, 15, 18, 19, 26, 28, 30, 34, 35, 36, 37, 41, 43, 44, 46, 48, 54, 74, 78, 80, 82, 86, 87, 89, 92, 93, 101, 102, 103, 107, 109, 113, 116, 117, 120, 124, 137, 143, 144, 146, 148, 161, 169, 172], "150": [9, 61, 138], "100000000": [9, 16, 105, 137], "separ": [9, 18, 19, 21, 22, 23, 26, 27, 45, 61, 67, 68, 81, 84, 87, 98, 104, 105, 106, 119, 121, 123, 128, 137, 138, 143, 144, 148, 168, 170], "accept": [9, 15, 18, 108, 119, 122, 132, 133], "choic": [9, 21, 29, 67, 80, 82, 85, 86, 91, 93, 100, 103, 104, 105, 109, 110, 114, 115, 118, 119, 122, 123, 125, 129, 144, 155, 158, 159, 161], "monodispers": [9, 12, 123], "standard": [9, 18, 27, 28, 29, 74, 82, 110, 112, 123, 143, 146, 159], "deviat": [9, 26, 45, 74, 110, 118, 123], "subsequ": [9, 22, 23, 27, 71, 111, 158, 170], "travel": [9, 56, 58], "long": [9, 12, 14, 18, 21, 22, 23, 27, 28, 30, 41, 43, 49, 51, 61, 67, 68, 70, 73, 74, 75, 76, 78, 104, 125, 170], "late": [9, 125], "popcorn": [9, 125], "rebuild": [9, 125], "store": [9, 15, 23, 73, 75, 76, 78, 87, 90, 110, 122, 125, 137, 143, 174], "displac": [9, 49, 125], "exce": [9, 125, 140, 158], "smallest": [9, 67, 68, 125, 137], "criterion": [9, 30, 31, 51, 58, 105, 125, 148], "rebuilt": [9, 125], "region": [9, 14, 20, 26, 27, 36, 78, 92, 100, 107, 109, 125, 137, 144, 160, 161, 170], "phi": [9, 24, 34, 35, 47, 54, 56, 58, 91, 93, 95, 100, 109, 110, 118, 125, 144, 146, 162], "min": [9, 19, 21, 22, 25, 26, 29, 30, 33, 34, 35, 37, 39, 41, 44, 45, 46, 47, 48, 54, 61, 64, 67, 68, 71, 90, 95, 102, 105, 109, 110, 125, 137, 146, 169], "d_c": [9, 125], "epsilon": [9, 31, 91, 93, 101, 110, 122, 125], "alpha": [9, 20, 21, 27, 39, 40, 48, 49, 56, 58, 71, 74, 97, 100, 101, 108, 118, 125, 137, 144, 146, 158], "denot": [9, 21, 39, 40, 41, 43, 101, 109, 122, 125, 127, 144, 146], "polydispers": [9, 123, 125], "safeti": [9, 125], "happen": [9, 19, 29, 33, 91, 102, 107, 125, 137, 146], "rather": [9, 26, 34, 46, 84, 125], "put": [9, 20, 28, 73, 75, 76, 102, 105], "addition": [9, 15, 25, 33, 41, 43, 73, 75, 76, 78, 118, 150], "termin": [9, 19, 20, 29, 31, 35, 58, 68, 73, 75, 76, 80, 83, 84, 87, 99, 107, 108, 109, 110, 112, 134, 136, 137, 170, 171, 172], "easi": [9, 49, 51, 61, 73, 75, 76, 159, 169], "monitor": [9, 20, 23, 29, 30, 31, 45, 48, 61, 73, 75, 76, 102, 108, 115, 118, 158], "bear": [9, 19, 20, 22, 23, 26, 49, 73, 74, 75, 78, 99, 143], "pvd": [9, 15, 18, 19, 20, 22, 23, 26, 28, 29, 51, 73, 74, 75, 78, 80, 107, 112, 115, 126, 137], "read": [9, 12, 15, 19, 20, 21, 22, 23, 26, 27, 56, 70, 72, 73, 74, 75, 76, 78, 87, 103, 104, 109, 115, 124, 132, 137, 140, 144, 146, 170, 172], "popular": [9, 20, 21, 22, 26, 27, 73, 74, 75, 78, 150], "program": [9, 19, 20, 22, 23, 26, 27, 55, 73, 74, 75, 78, 84], "vtu": [9, 18, 20, 27, 29, 46, 59, 61, 64, 67, 73, 112, 115, 122, 126, 137, 171], "compress": [9, 20, 33, 52, 54, 73, 83, 97, 109, 118, 169], "archiv": [9, 20, 73], "cannot": [9, 18, 19, 20, 29, 41, 59, 64, 67, 68, 73, 87, 101, 105, 109, 160, 170], "postprocess": [9, 18, 20, 21, 22, 23, 25, 30, 31, 33, 34, 35, 36, 37, 41, 44, 45, 46, 47, 48, 49, 54, 56, 58, 73, 78, 110, 112, 172], "directli": [9, 19, 20, 28, 30, 47, 64, 67, 68, 73, 80, 82, 84, 86, 87, 108, 122, 137, 150, 159, 168, 169, 170, 172], "easili": [9, 15, 20, 23, 24, 26, 29, 51, 73, 100, 169, 170], "sometim": [9, 20, 73, 84, 140, 171], "raw": [9, 18, 20, 73, 169, 172], "discharg": [10, 14, 121], "anand": 10, "depth": [10, 36, 39, 40, 49, 78, 80, 101, 141], "thin": [10, 21, 71, 109, 141, 142], "width": [10, 26, 29, 53, 169], "multipli": [10, 21, 35, 56, 114, 137, 144, 146, 155, 156, 162], "40740": 10, "6790": 10, "15": [10, 15, 19, 21, 22, 31, 34, 44, 54, 55, 58, 61, 70, 71, 72, 76, 78, 109, 119, 133, 138, 144, 148, 169, 171], "90": [10, 47, 91], "bottom": [10, 14, 18, 19, 20, 27, 28, 29, 41, 43, 45, 46, 53, 54, 62, 67, 68, 72, 75, 76, 77, 78, 83, 87, 104, 135, 169, 170], "act": [10, 19, 22, 23, 25, 28, 30, 31, 33, 35, 89, 99, 107], "collector": 10, "wa": [10, 15, 16, 19, 20, 21, 23, 26, 27, 28, 33, 35, 44, 56, 58, 61, 67, 68, 71, 73, 74, 75, 76, 77, 86, 133, 146, 159, 170, 172, 174], "hopper_structur": 10, "diamond": [10, 14, 124], "14": [10, 14, 19, 22, 28, 37, 44, 67, 68, 73, 75, 78, 84, 102, 138, 158, 170], "2910": 10, "25000": [10, 12, 43], "1030": 10, "10644": 10, "00224": 10, "16020": 10, "03136": 10, "20": [10, 12, 19, 24, 26, 29, 30, 31, 37, 39, 40, 43, 44, 46, 47, 48, 61, 67, 68, 72, 74, 75, 76, 78, 83, 86, 109, 118, 137, 138, 146, 168, 169, 170], "24": [10, 12, 16, 19, 34, 35, 41, 46, 54, 68, 78, 138, 148], "cm\u00b3": 10, "94": [10, 22, 56, 58, 134, 138], "2500": [10, 12, 16, 24, 73], "09": [10, 12, 14, 18, 27, 78], "silo": 10, "balac": 10, "50000": 10, "rayleigh": [10, 38, 52, 74, 122, 127], "nx": [10, 14, 73, 74, 75, 76, 77, 78, 121], "ny": [10, 14, 73, 74, 75, 76, 77, 78, 121], "nz": [10, 14, 73, 74, 75, 76, 77, 78, 121], "hopper_post_process": 10, "rate": [10, 20, 23, 27, 34, 54, 56, 61, 71, 78, 97, 109, 110, 112, 158, 160], "mass": [10, 15, 25, 29, 36, 44, 45, 61, 72, 73, 75, 76, 96, 109, 110, 113, 114, 137, 138, 146, 148, 150, 159], "hooper": 10, "84": 10, "now": [10, 15, 20, 22, 26, 28, 31, 41, 53, 58, 64, 70, 72, 73, 75, 76, 78, 82, 84, 87, 109, 137, 146, 148, 155, 160, 161, 168, 169, 170, 171], "origin": [10, 15, 35, 37, 46, 61, 81, 93, 104, 107, 135, 137, 140, 157, 158, 164, 167, 170], "did": [10, 18, 74], "modif": [10, 15, 21, 67, 68, 86, 169, 170], "previou": [10, 14, 15, 18, 22, 24, 25, 26, 27, 28, 29, 44, 48, 51, 55, 56, 58, 59, 67, 70, 72, 73, 74, 75, 76, 77, 78, 84, 97, 102, 108, 109, 111, 112, 122, 137, 138, 140, 146, 150, 158, 169, 170], "thick": [10, 21, 29, 70, 90, 93, 110, 137, 144, 169], "shape": [10, 14, 19, 21, 28, 33, 34, 43, 46, 48, 51, 54, 55, 56, 62, 64, 67, 71, 74, 77, 103, 104, 107, 124, 137, 144, 146, 150, 169, 170], "new": [10, 20, 22, 23, 28, 30, 51, 58, 67, 68, 74, 75, 76, 78, 80, 84, 86, 87, 97, 102, 103, 108, 112, 122, 137, 139, 143, 144, 148, 158, 161, 169, 170], "hopper_structured_period": 10, "treat": [10, 35, 51, 109, 150, 162], "solid": [10, 22, 29, 36, 38, 39, 40, 41, 56, 59, 60, 64, 72, 79, 95, 109, 110, 117, 120, 125, 136, 137, 138, 139, 148, 150, 169], "perpendicular": [10, 19, 29, 39, 40, 53, 101, 119], "pair": [10, 74, 109, 158], "85": [10, 12, 16, 19, 25, 70, 71], "91": 10, "73": [10, 27], "pbc": 10, "goe": [10, 18, 27, 55, 68, 95], "i7": [10, 77], "11700k": 10, "curti": 10, "wassgren": 10, "hancock": 10, "ketterhagen": 10, "chem": [10, 19, 25, 138, 148, 150, 167], "eng": [10, 18, 19, 25, 47, 49, 138, 146, 148, 150, 167], "sci": [10, 37, 45, 138, 148, 150, 167], "63": [10, 138], "5821": 10, "5830": 10, "dec": [10, 20, 30, 33, 138], "2008": [10, 18, 27], "ce": [10, 138, 150, 167], "08": [10, 22, 35, 44, 68, 101, 102, 108, 137], "015": [10, 76], "mini": 11, "lagrangian": [11, 28, 94, 117, 120, 139, 161], "ident": [11, 18, 41, 45, 49, 64, 72, 73, 74, 75, 76, 78, 83, 90, 109, 124, 127, 170], "temperatur": [11, 34, 36, 39, 40, 41, 43, 49, 53, 54, 74, 89, 91, 95, 96, 98, 100, 101, 105, 107, 109, 118, 125, 126, 159, 162], "variabl": [11, 15, 18, 19, 21, 22, 23, 24, 25, 26, 28, 29, 31, 33, 34, 35, 36, 37, 39, 44, 45, 46, 47, 54, 56, 58, 64, 67, 68, 71, 80, 82, 86, 87, 89, 91, 98, 104, 105, 113, 132, 136, 137, 144, 159, 168, 169], "built": [11, 15, 24, 26, 29, 51, 82, 84, 87, 126, 161], "capabl": [11, 22, 30, 36, 51, 61, 67, 68, 126, 150], "alizadeh": 12, "226080": 12, "cylindr": [12, 15, 16, 19, 23, 28, 31, 55, 58, 74, 75, 76, 77, 78, 103, 132, 133, 135, 136, 137], "appli": [12, 15, 16, 18, 19, 20, 22, 23, 26, 28, 29, 30, 31, 33, 36, 37, 41, 43, 45, 46, 51, 59, 61, 62, 71, 74, 77, 78, 90, 95, 97, 101, 102, 103, 104, 107, 108, 109, 110, 114, 117, 118, 119, 121, 122, 125, 128, 137, 138, 141, 146, 148, 150, 154, 156, 158, 162, 167, 168, 169, 170], "36": [12, 26, 70], "18": [12, 34, 54, 71, 82, 87, 109, 138], "38000": 12, "175": 12, "575": [12, 146], "003": [12, 16, 18, 25, 39], "m3": [12, 16], "97": [12, 16, 22, 72, 76, 77, 82, 86, 87, 148, 167], "35": [12, 16, 35, 37, 44, 70, 74, 78, 84], "updat": [12, 22, 28, 44, 67, 68, 74, 81, 82, 93, 97, 125, 137, 146, 148, 169, 173], "subdomain": [12, 14, 125, 126], "achiev": [12, 18, 19, 29, 30, 67, 68, 74, 80, 90, 102, 105, 125, 143, 144, 158, 170], "repartit": 12, "20000": [12, 14, 16, 20, 78, 122], "exert": [12, 119, 150], "imaginari": [12, 119, 124], "side": [12, 21, 27, 33, 34, 36, 46, 48, 51, 54, 56, 61, 67, 68, 70, 74, 75, 77, 90, 102, 115, 122, 137, 150, 158, 170], "11": [12, 18, 19, 21, 27, 28, 46, 49, 51, 67, 68, 70, 71, 73, 75, 78, 82, 86, 87, 102, 115, 138, 141, 148, 167, 171], "around": [12, 22, 29, 30, 53, 56, 59, 61, 64, 65, 67, 68, 71, 73, 74, 75, 78, 107, 118, 119, 125, 133, 137, 140, 141, 142, 146, 150, 168, 169], "cost": [12, 18, 21, 25, 27, 29, 53, 55, 58, 68, 102, 107, 108, 115, 118, 125, 133, 134, 144, 150, 158], "o": [12, 19, 21, 23, 28, 30, 36, 74, 78, 82, 84, 85, 111, 141, 148, 168, 169, 172], "dub\u00e9": 12, "bertrand": [12, 19, 25, 28, 148, 167], "chaouki": [12, 55, 56, 58, 134, 141, 142, 148, 167], "character": [12, 36, 109], "aich": [12, 138, 150], "59": [12, 53], "1894": 12, "1905": 12, "2013": [12, 21, 30, 138, 150, 167], "1002": [12, 20, 29, 30, 46, 47, 48, 138, 146, 148, 150, 158, 167], "aic": [12, 138, 150], "13982": 12, "whole": [13, 18, 21, 28, 53, 61, 78, 83, 97, 102, 169], "04": [13, 15, 16, 22, 23, 27, 56, 74, 75, 86, 87], "cubic": [13, 67, 68, 71], "2000000": [13, 61], "019": [13, 19, 25], "001": [13, 20, 21, 29, 33, 34, 39, 40, 44, 45, 46, 47, 51, 68, 73, 74, 75, 77, 78, 96, 123], "wedg": 14, "golshan": [14, 81, 141, 142, 148, 167], "checkpoint": [14, 16, 72, 73, 74, 75, 76, 78, 111, 140], "40": [14, 15, 21, 22, 28, 35, 44, 47, 61, 70, 71, 74, 75, 83, 150], "stopper": [14, 73, 75, 76, 128], "hopper": [14, 125, 126], "remov": [14, 37, 70, 84, 87, 121, 122, 138, 169], "contrari": [14, 18, 87], "share": [14, 30, 31, 35, 83, 104, 122, 171], "Such": [14, 56], "unstructur": 14, "detriment": 14, "stabil": [14, 20, 27, 29, 30, 35, 41, 43, 44, 47, 49, 53, 68, 72, 73, 74, 75, 76, 77, 94, 97, 109, 118, 137, 138, 141, 142, 157, 163, 164, 167], "stabl": [14, 18, 20, 23, 24, 25, 35, 53, 74, 77, 82, 86, 105, 114, 138, 143, 144, 161, 169], "vicin": [14, 18, 37, 104, 169], "37": [14, 18, 22, 24, 70], "042": [14, 74], "007": [14, 74, 148], "132300": 14, "005833": 14, "2e": 14, "break": [14, 30, 31, 34, 44, 46, 52, 54, 106, 118], "continu": [14, 25, 29, 44, 53, 55, 56, 61, 70, 72, 76, 81, 83, 87, 102, 107, 118, 141, 142, 144, 146, 150], "written": [14, 16, 25, 30, 31, 43, 45, 46, 51, 55, 56, 58, 73, 75, 76, 78, 83, 87, 99, 107, 111, 112, 126, 150, 159, 167, 169, 172], "filenam": [14, 48, 72, 73, 74, 75, 76, 78, 89, 110, 111, 132, 133, 134, 136, 169], "100000": [14, 16, 26, 56, 77, 125, 136], "temporari": [14, 121, 143], "hold": [14, 28, 100, 121, 155, 170], "xy": [14, 26, 71], "esgandari": 14, "zarghami": [14, 167], "saleh": 14, "resid": 14, "technol": [14, 28, 40, 78, 101, 138], "373": 14, "510": [14, 150], "521": 14, "aug": [14, 41, 49, 78, 109, 138, 150, 167], "powtec": [14, 28, 40, 74, 78, 138], "06": [14, 22, 23, 34, 43, 54, 55, 58, 70, 75, 121], "093": 14, "example_small_rotating_drum": 15, "radial": [15, 23, 29, 31, 36, 39, 40, 61, 74, 101, 137], "nnm": 15, "pleas": [15, 23, 28, 72, 76, 77, 142, 148, 170], "case_path": [15, 168], "prm_file_nam": 15, "pvd_name": 15, "n_proc": [15, 30, 31], "none": [15, 18, 29, 44, 53, 67, 90, 91, 103, 104, 105, 115, 117, 118, 125, 128, 133, 169], "constructor": [15, 21], "current": [15, 28, 30, 33, 35, 36, 45, 46, 48, 51, 56, 58, 61, 68, 73, 82, 84, 86, 88, 95, 102, 106, 108, 109, 117, 119, 128, 137, 138, 140, 146, 150, 154, 155, 168, 170, 174], "stand": [15, 35, 100], "interv": [15, 29, 49, 109, 110, 112, 146], "special": [15, 59, 67, 68, 169, 170, 171], "control": [15, 19, 70, 90, 94, 99, 100, 101, 102, 105, 106, 107, 108, 109, 110, 111, 114, 115, 118, 120, 125, 126, 131, 137, 138, 139, 143, 158, 169, 170, 171], "routin": [15, 81], "cpu": [15, 18, 24, 25, 29, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 53, 54, 61, 168], "time_list": 15, "return": [15, 28, 64, 87, 122], "situat": [15, 30, 37, 40, 46, 150, 170, 174], "everytim": 15, "dataset": [15, 18], "togeth": [15, 82, 86, 112], "dictionari": [15, 55], "prm_dict": 15, "name_of_the_paramet": 15, "occurr": [15, 23], "pvtu": [15, 115], "empti": [15, 122], "anoth": [15, 19, 23, 26, 27, 30, 36, 51, 53, 58, 68, 70, 73, 75, 76, 137, 143, 158, 167, 168, 172], "mod_": 15, "read_lethe_to_pyvista": 15, "assign": [15, 18, 59, 61, 90, 125, 137, 171], "step_numb": 15, "previous": [15, 37, 72, 77, 122, 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"simulation-control"], [37, "simulation-control"], [39, "simulation-control"], [40, "simulation-control"], [41, "simulation-control"], [43, "simulation-control"], [44, "simulation-control"], [45, "simulation-control"], [46, "simulation-control"], [47, "simulation-control"], [48, "simulation-control"], [49, "simulation-control"], [53, "simulation-control"], [54, "simulation-control"], [61, "simulation-control"], [67, "simulation-control"], [68, "simulation-control"], [71, "simulation-control"], [72, "simulation-control"], [72, "id1"], [73, "simulation-control"], [73, "id1"], [74, "simulation-control"], [74, "id6"], [74, "id12"], [75, "simulation-control"], [75, "id3"], [76, "simulation-control"], [76, "id3"], [77, "simulation-control"], [78, "simulation-control"], [78, "id7"], [112, "simulation-control"], [127, "simulation-control"]], "Results for H=20 \\ \\text{cm}": [[5, "results-for-h-20-text-cm"]], "Results for H=40 \\ \\text{cm}": [[5, "results-for-h-40-text-cm"]], "Granular Mixer": [[6, "granular-mixer"]], "Solid Objects": [[6, "solid-objects"], [74, "solid-objects"], [128, "solid-objects"]], "Possibility for Extension": [[6, "possibility-for-extension"], [28, "possibility-for-extension"], [39, "possibility-for-extension"]], "Oblique Wall Impact": [[7, "oblique-wall-impact"]], "Model parameters": [[7, "model-parameters"]], "Generating the parameter files": [[7, "generating-the-parameter-files"]], "Packing in Ball": [[8, "packing-in-ball"]], "Packing in Circle": [[9, "packing-in-circle"]], "Rectangular Hopper": [[10, "rectangular-hopper"]], "Floating Walls": [[10, "floating-walls"], [14, "floating-walls"], [73, "floating-walls"], [74, "floating-walls"], [75, "floating-walls"], [76, "floating-walls"], [77, "floating-walls"], [78, "floating-walls"]], "Post-processing": [[10, "post-processing"], [11, "post-processing"], [27, "post-processing"], [29, "post-processing"], [30, "post-processing"], [31, "post-processing"], [36, "post-processing"], [45, "post-processing"], [74, "post-processing"], [110, "post-processing"], [126, "post-processing"]], "Results Post-processing": [[10, "results-post-processing"]], "Case with Periodic Boundary Conditions": [[10, "case-with-periodic-boundary-conditions"]], "Boundary Conditions": [[10, "boundary-conditions"], [18, "boundary-conditions"], [19, "boundary-conditions"], [20, "boundary-conditions"], [21, "boundary-conditions"], [22, "boundary-conditions"], [23, "boundary-conditions"], [26, "boundary-conditions"], [27, "boundary-conditions"], [28, "boundary-conditions"], [29, "boundary-conditions"], [30, "boundary-conditions"], [31, "boundary-conditions"], [34, "boundary-conditions"], [36, "boundary-conditions"], [39, "boundary-conditions"], [40, "boundary-conditions"], [44, "boundary-conditions"], [45, "boundary-conditions"], [49, "boundary-conditions"], [51, "boundary-conditions"], [53, "boundary-conditions"], [54, "boundary-conditions"], [59, "boundary-conditions"], [61, "boundary-conditions"], [62, "boundary-conditions"], [64, "boundary-conditions"], [67, "boundary-conditions"], [68, "boundary-conditions"], [71, "boundary-conditions"], [72, "boundary-conditions"], [73, "boundary-conditions"], [74, "boundary-conditions"], [75, "boundary-conditions"], [76, "boundary-conditions"], [77, "boundary-conditions"], [78, "boundary-conditions"], [119, "boundary-conditions"]], "Results Comparison": [[10, "results-comparison"]], "Rotating Drum with Postprocessing": [[11, "rotating-drum-with-postprocessing"]], "Rotating Drum": [[12, "rotating-drum"]], "DEM Boundary Conditions": [[12, "dem-boundary-conditions"], [16, "dem-boundary-conditions"]], "Rotation of Box": [[13, "rotation-of-box"]], "Silo": [[14, "silo"]], "Restart": [[14, "restart"], [72, "restart"], [73, "restart"], [74, "restart"], [74, "id7"], [75, "restart"], [76, "restart"], [78, "restart"], [111, "restart"]], "Small Scale Rotating Drum Postprocessing": [[15, "small-scale-rotating-drum-postprocessing"]], "Python Code": [[15, "python-code"]], "Constructing the Object": [[15, "constructing-the-object"]], "Creation of a New Array": [[15, "creation-of-a-new-array"]], "Visualizing the Results": [[15, "visualizing-the-results"]], "PyVista Visualization": [[15, "pyvista-visualization"]], "ParaView Visualization": [[15, "paraview-visualization"]], "Mixing Index": [[15, "mixing-index"]], "Nearest Neighbors Method": [[15, "nearest-neighbors-method"]], "Doucet Mixing Index": [[15, "doucet-mixing-index"]], "Small Scale Rotating Drum": [[16, "small-scale-rotating-drum"]], "Packing information": [[16, "packing-information"]], "Flow past a Backward-Facing Step": [[18, "flow-past-a-backward-facing-step"]], "Physical Properties": [[18, "physical-properties"], [20, "physical-properties"], [21, "physical-properties"], [22, "physical-properties"], [23, "physical-properties"], [25, "physical-properties"], [26, "physical-properties"], [27, "physical-properties"], [28, "physical-properties"], [29, "physical-properties"], [30, "physical-properties"], [31, "physical-properties"], [33, "physical-properties"], [34, "physical-properties"], [35, "physical-properties"], [36, "physical-properties"], [37, "physical-properties"], [40, "physical-properties"], [41, "physical-properties"], [43, "physical-properties"], [44, "physical-properties"], [45, "physical-properties"], [46, "physical-properties"], [47, "physical-properties"], [48, "physical-properties"], [49, "physical-properties"], [51, "physical-properties"], [53, "physical-properties"], [54, "physical-properties"], [61, "physical-properties"], [67, "physical-properties"], [68, "physical-properties"], [71, "physical-properties"], [72, "physical-properties"], [73, "physical-properties"], [74, "physical-properties"], [75, "physical-properties"], [76, "physical-properties"], [78, "physical-properties"], [109, "physical-properties"]], "Mesh Adaptation": [[18, "mesh-adaptation"], [19, "mesh-adaptation"], [21, "mesh-adaptation"], [23, "mesh-adaptation"], [25, "mesh-adaptation"], [26, "mesh-adaptation"], [29, "mesh-adaptation"], [33, "mesh-adaptation"], [34, "mesh-adaptation"], [35, "mesh-adaptation"], [39, "mesh-adaptation"], [44, "mesh-adaptation"], [45, "mesh-adaptation"], [46, "mesh-adaptation"], [54, "mesh-adaptation"], [67, "mesh-adaptation"], [68, "mesh-adaptation"], [71, "mesh-adaptation"], [105, "mesh-adaptation"]], "FEM": [[18, "fem"], [27, "fem"], [51, "fem"], [53, "fem"], [67, "fem"], [68, "fem"]], "Non-linear Solver": [[18, "non-linear-solver"], [20, "non-linear-solver"], [21, "non-linear-solver"], [27, "non-linear-solver"], [28, "non-linear-solver"], [29, "non-linear-solver"], [67, "non-linear-solver"], [68, "non-linear-solver"], [72, "non-linear-solver"], [73, "non-linear-solver"], [74, "non-linear-solver"], [75, "non-linear-solver"], [76, "non-linear-solver"], [78, "non-linear-solver"], [108, "non-linear-solver"]], "Linear Solver": [[18, "linear-solver"], [20, "linear-solver"], [21, "linear-solver"], [25, "linear-solver"], [28, "linear-solver"], [29, "linear-solver"], [67, "linear-solver"], [68, "linear-solver"], [72, "linear-solver"], [73, "linear-solver"], [75, "linear-solver"], [76, "linear-solver"], [78, "linear-solver"], [102, "linear-solver"]], "Running the Simulations": [[18, "running-the-simulations"], [20, "running-the-simulations"], [21, "running-the-simulations"], [74, "running-the-simulations"]], "Low Reynolds Number (Re=100)": [[18, "low-reynolds-number-re-100"]], "Higher Reynolds Number (Re=1000)": [[18, "higher-reynolds-number-re-1000"]], "Validation and Comparison": [[18, "validation-and-comparison"]], "Reattachment Length": [[18, "reattachment-length"]], "Velocity Distribution": [[18, "velocity-distribution"]], "References": [[18, "references"], [20, "references"], [21, "references"], [23, "references"], [25, "references"], [27, "references"], [30, "references"], [31, "references"], [33, "references"], [34, "references"], [35, "references"], [36, "references"], [37, "references"], [40, "references"], [41, "references"], [43, "references"], [44, "references"], [45, "references"], [46, "references"], [47, "references"], [48, "references"], [49, "references"], [54, "references"], [55, "references"], [56, "references"], [58, "references"], [74, "references"], [78, "references"], [101, "references"], [109, "references"], [132, "references"], [134, "references"], [136, "references"], [144, "references"], [146, "references"], [148, "references"], [158, "references"], [167, "references"]], "Flow around a Cylinder": [[19, "flow-around-a-cylinder"]], "Manifolds": [[19, "manifolds"], [103, "manifolds"]], "Initial Conditions": [[19, "initial-conditions"], [26, "initial-conditions"], [31, "initial-conditions"], [33, "initial-conditions"], [34, "initial-conditions"], [35, "initial-conditions"], [37, "initial-conditions"], [41, "initial-conditions"], [44, "initial-conditions"], [45, "initial-conditions"], [46, "initial-conditions"], [47, "initial-conditions"], [48, "initial-conditions"], [54, "initial-conditions"], [62, "initial-conditions"], [67, "initial-conditions"], [68, "initial-conditions"], [71, "initial-conditions"], [72, "initial-conditions"], [73, "initial-conditions"], [75, "initial-conditions"], [76, "initial-conditions"], [78, "initial-conditions"], [100, "initial-conditions"]], "Forces": [[19, "forces"], [21, "forces"], [22, "forces"], [23, "forces"], [25, "forces"], [28, "forces"], [31, "forces"]], "Lid-Driven Cavity Flow": [[20, "lid-driven-cavity-flow"]], "FEM Interpolation": [[20, "fem-interpolation"], [22, "fem-interpolation"], [23, "fem-interpolation"], [25, "fem-interpolation"], [26, "fem-interpolation"], [30, "fem-interpolation"], [31, "fem-interpolation"]], "Base Case (Re=400)": [[20, "base-case-re-400"]], "Higher-Reynolds Case (Re=7500)": [[20, "higher-reynolds-case-re-7500"]], "Flow around NACA0012 at Low Reynolds Number": [[21, "flow-around-naca0012-at-low-reynolds-number"]], "Taylor-Couette Flow Using Nitsche Immersed Boundary": [[22, "taylor-couette-flow-using-nitsche-immersed-boundary"]], "Nitsche Mesh": [[22, "nitsche-mesh"]], "Analytical Solution": [[22, "analytical-solution"], [23, "analytical-solution"], [48, "analytical-solution"], [53, "analytical-solution"], [89, "analytical-solution"]], "Simulation Control and Mesh Refinement": [[22, "simulation-control-and-mesh-refinement"]], "Uniform Mesh Refinement": [[22, "uniform-mesh-refinement"], [22, "id1"]], "Adaptative Mesh Refinement": [[22, "adaptative-mesh-refinement"], [22, "id2"]], "Rest of the Subsections": [[22, "rest-of-the-subsections"], [23, "rest-of-the-subsections"]], "Taylor-Couette Flow": [[23, "taylor-couette-flow"]], "Transient Flow around an Ahmed Body": [[24, "transient-flow-around-an-ahmed-body"]], "Initial and Boundary Conditions": [[24, "initial-and-boundary-conditions"], [25, "initial-and-boundary-conditions"]], "Transient Flow around a Cylinder": [[25, "transient-flow-around-a-cylinder"]], "Flow around a Sphere": [[26, "flow-around-a-sphere"]], "First Case Results (Re=0.1)": [[26, "first-case-results-re-0-1"]], "Second Case Results (Re=150)": [[26, "second-case-results-re-150"]], "Third Case Results (Re=150 With an Adaptative Mesh Refinement)": [[26, "third-case-results-re-150-with-an-adaptative-mesh-refinement"]], "Flow over Periodic Hills": [[27, "flow-over-periodic-hills"]], "Flow Control": [[27, "flow-control"]], "Ribbon Mixer Using a Single Rotating Reference Frame": [[28, "ribbon-mixer-using-a-single-rotating-reference-frame"]], "Velocity Source": [[28, "velocity-source"], [117, "velocity-source"]], "Generating the Mesh": [[28, "generating-the-mesh"]], "Simulating for a Specific Flow Condition (Re=1)": [[28, "simulating-for-a-specific-flow-condition-re-1"], [28, "id2"]], "Generating N_p vs Re Curves (Re \\in [0.1, 100])": [[28, "generating-n-p-vs-re-curves-re-in-0-1-100"], [28, "id3"]], "Generating the Different Cases": [[28, "generating-the-different-cases"]], "Copying Files to the Cluster": [[28, "copying-files-to-the-cluster"]], "Submitting Jobs and Launching Simulations": [[28, "submitting-jobs-and-launching-simulations"]], "Have trouble submitting the jobs?": [[28, null]], "Copying Files to Your Local Computer (Using SFTP)": [[28, "copying-files-to-your-local-computer-using-sftp"]], "Postprocess Data": [[28, "postprocess-data"]], "Mixer with Pitched-Blade Turbine Impeller Using Nitsche Immersed Boundary": [[29, "mixer-with-pitched-blade-turbine-impeller-using-nitsche-immersed-boundary"]], "Nitsche Immersed Boundary Parameters": [[29, "nitsche-immersed-boundary-parameters"]], "Taylor-Green Vortex": [[30, "taylor-green-vortex"]], "Matrix-based - Non-linear Solver": [[30, "matrix-based-non-linear-solver"]], "Matrix-based - Linear Solver": [[30, "matrix-based-linear-solver"]], "Matrix-free  - Non-linear Solver": [[30, "matrix-free-non-linear-solver"]], "Matrix-free - Linear Solver": [[30, "matrix-free-linear-solver"]], "Turbulent Taylor-Couette Flow": [[31, "turbulent-taylor-couette-flow"]], "Other Subsections": [[31, "other-subsections"]], "Incompressible Flow": [[32, "incompressible-flow"], [65, "incompressible-flow"]], "3D Dam-Break with an Obstacle": [[33, "d-dam-break-with-an-obstacle"]], "Multiphysics": [[33, "multiphysics"], [34, "multiphysics"], [35, "multiphysics"], [36, "multiphysics"], [37, "multiphysics"], [39, "multiphysics"], [40, "multiphysics"], [41, "multiphysics"], [42, "multiphysics"], [43, "multiphysics"], [44, "multiphysics"], [45, "multiphysics"], [46, "multiphysics"], [47, "multiphysics"], [48, "multiphysics"], [51, "multiphysics"], [53, "multiphysics"], [54, "multiphysics"], [106, "multiphysics"], [164, "multiphysics"], [167, "multiphysics"]], "Source Term": [[33, "source-term"], [37, "source-term"], [41, "source-term"], [43, "source-term"], [45, "source-term"], [46, "source-term"], [47, "source-term"], [113, "source-term"]], "VOF": [[33, "vof"], [34, "vof"], [37, "vof"], [45, "vof"], [46, "vof"], [48, "vof"], [52, "vof"], [54, "vof"], [91, "vof"]], "Air Bubble Compression": [[34, "air-bubble-compression"]], "Boundary Conditions - Fluid Dynamics": [[34, "boundary-conditions-fluid-dynamics"], [54, "boundary-conditions-fluid-dynamics"]], "Boundary Conditions - VOF": [[34, "boundary-conditions-vof"], [54, "boundary-conditions-vof"]], "Capillary Wave": [[35, "capillary-wave"]], "Results for \\Delta t = 0.95\\Delta t_\\sigma": [[35, "results-for-delta-t-0-95-delta-t-sigma"]], "Results for \\Delta t = \\mathrm{TSM} \\times \\Delta t_\\sigma with \\mathrm{TSM} \\in \\{0.95,15,20\\}": [[35, "results-for-delta-t-mathrm-tsm-times-delta-t-sigma-with-mathrm-tsm-in-0-95-15-20"]], "Acknowledgment": [[35, "acknowledgment"]], "Concentric Heat Exchanger": [[36, "concentric-heat-exchanger"]], "Boundary Conditions Heat Transfer": [[36, "boundary-conditions-heat-transfer"]], "Dam-Break": [[37, "dam-break"]], "Interface Sharpening Parameters": [[37, "interface-sharpening-parameters"]], "Fluid Phase Parameters": [[37, "fluid-phase-parameters"]], "Heat Transfer": [[38, "heat-transfer"], [91, "heat-transfer"], [163, "heat-transfer"]], "Laser Heating": [[39, "laser-heating"]], "Laser Parameters": [[39, "laser-parameters"], [40, "laser-parameters"]], "Laser Melt Pool": [[40, "laser-melt-pool"]], "Melting Cavity": [[41, "melting-cavity"]], "Improving Computational Performances with Stasis Constraints": [[41, "improving-computational-performances-with-stasis-constraints"]], "Darcy Penalization: An Alternative Approach": [[41, "darcy-penalization-an-alternative-approach"]], "Rayleigh-B\u00e9nard Convection": [[43, "rayleigh-benard-convection"]], "Rayleigh-Plateau Instability": [[44, "rayleigh-plateau-instability"]], "Boundary Conditions VOF": [[44, "boundary-conditions-vof"]], "Simulation Results": [[44, "simulation-results"]], "Satellite Droplets": [[44, "satellite-droplets"]], "Code to Code Comparison": [[44, "code-to-code-comparison"]], "Rayleigh-Taylor Instability": [[45, "rayleigh-taylor-instability"]], "Rising Bubble": [[46, "rising-bubble"]], "Post-processing: Fluid Barycenter Position and Velocity": [[46, "post-processing-fluid-barycenter-position-and-velocity"]], "Sloshing in a Rectangular Tank": [[47, "sloshing-in-a-rectangular-tank"]], "Static Bubble": [[48, "static-bubble"]], "Surface Tension Force": [[48, "surface-tension-force"], [118, "surface-tension-force"]], "Mesh Convergence Study": [[48, "mesh-convergence-study"]], "Stefan Problem: Melting of a Solid": [[49, "stefan-problem-melting-of-a-solid"]], "Tracer": [[50, "tracer"], [91, "tracer"]], "Tracer through CAD Junction in Simplex": [[51, "tracer-through-cad-junction-in-simplex"]], "Generating a Geometry with SALOME": [[51, "generating-a-geometry-with-salome"]], "Adding the Boundary IDs from Gmsh": [[51, "adding-the-boundary-ids-from-gmsh"]], "Enabling the Simplex Mode": [[51, "enabling-the-simplex-mode"]], "Setting up the Tracer Physics": [[51, "setting-up-the-tracer-physics"]], "Tracer Boundary Conditions": [[51, "tracer-boundary-conditions"]], "Warming up a Viscous Fluid": [[53, "warming-up-a-viscous-fluid"]], "Visualizations": [[53, "visualizations"]], "Physical Interpretation": [[53, "physical-interpretation"]], "Bonuses": [[53, "bonuses"]], "Results for Water": [[53, "results-for-water"]], "Results without Viscous Dissipation": [[53, "results-without-viscous-dissipation"]], "Horizontal Domain": [[53, "horizontal-domain"]], "Water Injection in a Closed Cell": [[54, "water-injection-in-a-closed-cell"]], "Particle FEM Reconstruction": [[55, "particle-fem-reconstruction"]], "RPT Parameters": [[55, "rpt-parameters"], [56, "rpt-parameters"], [58, "rpt-parameters"], [136, "rpt-parameters"]], "Detector Parameters": [[55, "detector-parameters"], [56, "detector-parameters"], [132, "detector-parameters"]], "FEM Reconstruction Parameters": [[55, "fem-reconstruction-parameters"]], "Photon Count Calculation in a Cylindrical Vessel": [[56, "photon-count-calculation-in-a-cylindrical-vessel"]], "Scenario 1: Horizontal Translation of a Particle along the X-Axis": [[56, "scenario-1-horizontal-translation-of-a-particle-along-the-x-axis"]], "Scenario 2: Horizontal Translation of a Particle along the Y-Axis": [[56, "scenario-2-horizontal-translation-of-a-particle-along-the-y-axis"]], "Scenario 3: Vertical Translation of a Particle along the Z-Axis": [[56, "scenario-3-vertical-translation-of-a-particle-along-the-z-axis"]], "Scenario 4: Particle Going across the Vessel on a Diagonal Line": [[56, "scenario-4-particle-going-across-the-vessel-on-a-diagonal-line"]], "Sensitivity Analysis of the Monte Carlo Method": [[56, "sensitivity-analysis-of-the-monte-carlo-method"]], "Radioactive Particle Tracking (RPT)": [[57, "radioactive-particle-tracking-rpt"], [135, "radioactive-particle-tracking-rpt"]], "Tuning Count Calculation Model Parameters with NOMAD": [[58, "tuning-count-calculation-model-parameters-with-nomad"]], "Parameter Files": [[58, "parameter-files"]], "rpt-parameters.prm File": [[58, "rpt-parameters-prm-file"]], "Parameter Tuning": [[58, "parameter-tuning"], [134, "parameter-tuning"]], "Detector parameters": [[58, "detector-parameters"]], "param-nomad.txt File": [[58, "param-nomad-txt-file"]], "3D Mixer with Pitched-Blade Turbine Impeller Using Composite Sharp-Immersed Boundary": [[59, "d-mixer-with-pitched-blade-turbine-impeller-using-composite-sharp-immersed-boundary"]], "Creation of the Composite Shape File": [[59, "creation-of-the-composite-shape-file"], [61, "creation-of-the-composite-shape-file"], [70, "creation-of-the-composite-shape-file"]], "Definition of the Shape and Its Motion": [[59, "definition-of-the-shape-and-its-motion"], [60, "definition-of-the-shape-and-its-motion"]], "3D Mixer with Pitched-Blade Turbine Impeller Using OpenCascade Sharp-Immersed Boundary": [[60, "d-mixer-with-pitched-blade-turbine-impeller-using-opencascade-sharp-immersed-boundary"]], "Creation of the STEP File": [[60, "creation-of-the-step-file"]], "3D Static Mixer Using RBF Sharp Immersed Boundary": [[61, "d-static-mixer-using-rbf-sharp-immersed-boundary"]], "Preparation of the Solid": [[61, "preparation-of-the-solid"]], "Generation of the RBF file from the STL": [[61, "generation-of-the-rbf-file-from-the-stl"]], "Mesh and Mesh Adaptation": [[61, "mesh-and-mesh-adaptation"]], "Definition of the Shape": [[61, "definition-of-the-shape"]], "Post-Processing": [[61, "post-processing"]], "Flow around a Cylinder Using the Sharp Interface Method": [[62, "flow-around-a-cylinder-using-the-sharp-interface-method"]], "IB Particles": [[62, "ib-particles"], [67, "ib-particles"], [68, "ib-particles"]], "Geometry Definition": [[63, "geometry-definition"]], "Inclined 3D Mixer with Pitched-Blade Turbine Impeller Using Composite Sharp-Immersed Boundary": [[64, "inclined-3d-mixer-with-pitched-blade-turbine-impeller-using-composite-sharp-immersed-boundary"]], "Mesh definition": [[64, "mesh-definition"]], "Definition of the Impeller Motion": [[64, "definition-of-the-impeller-motion"]], "Resolved CFD-DEM": [[66, "resolved-cfd-dem"], [149, "resolved-cfd-dem"]], "Sedimentation of One Particle": [[67, "sedimentation-of-one-particle"]], "Sedimentation of 64 Particles": [[68, "sedimentation-of-64-particles"]], "Particles File": [[68, "particles-file"]], "Sharp Immersed Boundary Solver": [[69, "sharp-immersed-boundary-solver"]], "Simple Plane Model From Composite": [[70, "simple-plane-model-from-composite"]], "Non-Newtonian Flow past a Sphere": [[71, "non-newtonian-flow-past-a-sphere"]], "Particle": [[71, "particle"]], "Boycott Effect": [[72, "boycott-effect"]], "DEM Parameter File": [[72, "dem-parameter-file"], [73, "dem-parameter-file"], [75, "dem-parameter-file"], [76, "dem-parameter-file"], [77, "dem-parameter-file"], [78, "dem-parameter-file"]], "Running the DEM Simulation": [[72, "running-the-dem-simulation"], [73, "running-the-dem-simulation"], [75, "running-the-dem-simulation"], [76, "running-the-dem-simulation"], [77, "running-the-dem-simulation"], [78, "running-the-dem-simulation"]], "CFD-DEM Parameter File": [[72, "cfd-dem-parameter-file"], [75, "cfd-dem-parameter-file"], [76, "cfd-dem-parameter-file"], [77, "cfd-dem-parameter-file"], [78, "cfd-dem-parameter-file"]], "Void Fraction": [[72, "void-fraction"], [73, "void-fraction"], [74, "void-fraction"], [75, "void-fraction"], [76, "void-fraction"], [78, "void-fraction"], [140, "void-fraction"], [150, "void-fraction"]], "CFD-DEM": [[72, "cfd-dem"], [73, "cfd-dem"], [74, "cfd-dem"], [75, "cfd-dem"], [76, "cfd-dem"], [77, "cfd-dem"], [78, "cfd-dem"], [138, "cfd-dem"], [147, "cfd-dem"]], "Running the CFD-DEM Simulation": [[72, "running-the-cfd-dem-simulation"], [75, "running-the-cfd-dem-simulation"], [76, "running-the-cfd-dem-simulation"], [77, "running-the-cfd-dem-simulation"], [78, "running-the-cfd-dem-simulation"]], "Cylindrical Packed Bed": [[73, "cylindrical-packed-bed"]], "Results DEM": [[73, "results-dem"]], "VANS Parameter File": [[73, "vans-parameter-file"]], "Running the VANS Simulation": [[73, "running-the-vans-simulation"]], "Results VANS": [[73, "results-vans"]], "Dense Pneumatic Conveying": [[74, "dense-pneumatic-conveying"]], "Files Used in this Example": [[74, "files-used-in-this-example"]], "DEM Parameter files": [[74, "dem-parameter-files"]], "Loading Particles": [[74, "loading-particles"]], "Boundary Conditions DEM": [[74, "boundary-conditions-dem"]], "Settling Particles": [[74, "settling-particles"]], "CFD-DEM Parameter file": [[74, "cfd-dem-parameter-file"]], "Pneumatic Conveying Simulation": [[74, "pneumatic-conveying-simulation"]], "Flow control": [[74, "flow-control"]], "Mass Flow Rate and Velocities": [[74, "mass-flow-rate-and-velocities"]], "Time-averaged velocities at quasi-steady state.": [[74, "id21"]], "Gas-Solid Fluidized Bed": [[75, "gas-solid-fluidized-bed"]], "Gas-Solid Spouted Bed": [[76, "gas-solid-spouted-bed"]], "Gas-Solid Spouted Cylinder Bed": [[77, "gas-solid-spouted-cylinder-bed"]], "Total Pressure Drop": [[77, "total-pressure-drop"]], "Visualization": [[77, "visualization"]], "Liquid-Solid Fluidized Bed": [[78, "liquid-solid-fluidized-bed"]], "Side View": [[78, "side-view"]], "Total Pressure Drop and Bed Expansion": [[78, "total-pressure-drop-and-bed-expansion"]], "Particles Dynamics": [[78, "particles-dynamics"]], "Unresolved CFD-DEM": [[79, "unresolved-cfd-dem"], [139, "unresolved-cfd-dem"], [142, "unresolved-cfd-dem"], [150, "unresolved-cfd-dem"]], "Launching Your First Simulation": [[80, "launching-your-first-simulation"]], "Step 1: Copying an Example": [[80, "step-1-copying-an-example"]], "Step 2: Launching the Example": [[80, "step-2-launching-the-example"]], "Step 3: Post-processing the Results": [[80, "step-3-post-processing-the-results"]], "Understanding the Examples": [[80, "understanding-the-examples"]], "Lethe": [[81, "lethe"]], "Contents": [[81, "contents"]], "Installation": [[81, "installation"], [85, "installation"], [169, "installation"], [170, "installation"]], "Authors": [[81, "authors"]], "Installation on Apple ARM (M1 or M2)": [[82, "installation-on-apple-arm-m1-or-m2"]], "Installing deal.II Using Candi (Step #1)": [[82, "installing-deal-ii-using-candi-step-1"]], "Setting the Library and Include Paths": [[82, "setting-the-library-and-include-paths"]], "Fixing Trilinos Includes": [[82, "fixing-trilinos-includes"]], "Numdiff": [[82, "numdiff"]], "Installation of Lethe (Step #2)": [[82, "installation-of-lethe-step-2"]], "Running Lethe on Digital Research Alliance of Canada Clusters": [[83, "running-lethe-on-digital-research-alliance-of-canada-clusters"]], "Setting-up the Folder Structure": [[83, "setting-up-the-folder-structure"]], "Installing deal.II": [[83, "installing-deal-ii"]], "On Niagara, Beluga, Narval, Graham or Cedar": [[83, "on-niagara-beluga-narval-graham-or-cedar"]], "Installing Lethe": [[83, "installing-lethe"], [86, "installing-lethe"]], "Installing Numdiff to Enable Tests": [[83, "installing-numdiff-to-enable-tests"]], "Copying Local Files": [[83, "copying-local-files"]], "Creating a .dealii": [[83, "creating-a-dealii"]], "Launching Simulations": [[83, "launching-simulations"]], "Saving a SSH Key (Linux)": [[83, "saving-a-ssh-key-linux"]], "Docker": [[84, "docker"]], "No Compilation Required: Using the Provided Lethe Docker Image": [[84, "no-compilation-required-using-the-provided-lethe-docker-image"]], "Using a deal.II  Docker Container": [[84, "using-a-deal-ii-docker-container"]], "0. TL;DR": [[84, "tl-dr"]], "1. Get Docker": [[84, "get-docker"]], "2. Launch a deal.II Container": [[84, "launch-a-deal-ii-container"]], "3. Saving Docker Commands in a Bash Script": [[84, "saving-docker-commands-in-a-bash-script"]], "Final Notes": [[84, "final-notes"]], "Regular Installation on Linux": [[86, "regular-installation-on-linux"]], "Installing deal.II using apt": [[86, "installing-deal-ii-using-apt"]], "Installing deal.II using Candi": [[86, "installing-deal-ii-using-candi"]], "Testing Your Installation": [[86, "testing-your-installation"]], "Installing deal.II manually": [[86, "installing-deal-ii-manually"]], "Updating deal.II": [[86, "updating-deal-ii"]], "Through apt": [[86, "through-apt"], [87, "through-apt"]], "Through the Git Repository": [[86, "through-the-git-repository"]], "With Candi": [[86, "with-candi"], [87, "with-candi"]], "Windows with WSL": [[87, "windows-with-wsl"]], "Installing WSL and Ubuntu (Step #0)": [[87, "installing-wsl-and-ubuntu-step-0"]], "Verify the installed version of WSL": [[87, null]], "Installing deal.II using apt (Step #1)": [[87, "installing-deal-ii-using-apt-step-1"]], "Installing deal.II using Candi (Step #1)": [[87, "installing-deal-ii-using-candi-step-1"]], "Check the default version of the compilers": [[87, null]], "Installing Lethe (Step #2)": [[87, "installing-lethe-step-2"]], "Updating deal.II and Lethe": [[87, "updating-deal-ii-and-lethe"]], "Troubleshooting": [[87, "troubleshooting"]], "Change Compiler Default Version": [[87, "change-compiler-default-version"]], "Modify Candi Installation Parameters with Nano": [[87, "modify-candi-installation-parameters-with-nano"]], "Example for the candi.cfg": [[87, null]], "Arbitrary Lagrangian-Eulerian": [[88, "arbitrary-lagrangian-eulerian"]], "Boundary Conditions - CFD": [[90, "boundary-conditions-cfd"]], "Boundary Conditions - Multiphysics": [[91, "boundary-conditions-multiphysics"]], "Cahn-Hilliard": [[91, "cahn-hilliard"], [93, "cahn-hilliard"]], "Box Refinement": [[92, "box-refinement"]], "General, CFD and Multiphysics": [[94, "general-cfd-and-multiphysics"]], "Constrain Stasis": [[95, "constrain-stasis"]], "Dimensionality": [[96, "dimensionality"]], "Dynamic Flow Control": [[97, "dynamic-flow-control"]], "Finite Element Interpolation (FEM)": [[98, "finite-element-interpolation-fem"]], "Force and Torque Calculation": [[99, "force-and-torque-calculation"]], "Laser Heat Source": [[101, "laser-heat-source"]], "Laser types": [[101, "laser-types"]], "Example of a set verbosity = verbose output:": [[102, null]], "ILU preconditioner": [[102, "ilu-preconditioner"]], "AMG preconditioner": [[102, "amg-preconditioner"]], "LSMG and GCMG preconditioners": [[102, "lsmg-and-gcmg-preconditioners"]], "Understanding Manifolds": [[103, "understanding-manifolds"]], "Nitsche Immersed Boundary": [[107, "nitsche-immersed-boundary"]], "Examples of solid velocity Function expression:": [[107, null]], "Material Physical Property Models": [[109, "material-physical-property-models"]], "Two Phase Simulations": [[109, "two-phase-simulations"]], "Conjugate Heat Transfer": [[109, "conjugate-heat-transfer"]], "Rheological Models": [[109, "rheological-models"]], "Power-Law Model": [[109, "power-law-model"]], "Carreau Model": [[109, "carreau-model"]], "Phase-Change Model": [[109, "phase-change-model"]], "Density Models": [[109, "density-models"]], "Thermal Conductivity Models": [[109, "thermal-conductivity-models"]], "Specific Heat Models": [[109, "specific-heat-models"]], "Thermal Expansion Models": [[109, "thermal-expansion-models"]], "Phase Change": [[109, "phase-change"]], "Interface Physical Property Models": [[109, "interface-physical-property-models"]], "Surface Tension Models": [[109, "surface-tension-models"]], "Cahn-Hilliard Mobility Models": [[109, "cahn-hilliard-mobility-models"]], "Example of temperature statistics table:": [[110, null]], "Example of heat flux table:": [[110, null]], "Examples of Function Expression": [[113, "examples-of-function-expression"]], "Stabilization": [[114, "stabilization"], [144, "stabilization"], [146, "stabilization"]], "Timer": [[115, "timer"], [130, "timer"]], "Tracer Drift Velocity": [[116, "tracer-drift-velocity"]], "Rotating Frame": [[117, "rotating-frame"]], "Darcy Penalization": [[117, "darcy-penalization"]], "Volume of Fluid (Multiphase Flow)": [[118, "volume-of-fluid-multiphase-flow"]], "Interface Sharpening": [[118, "interface-sharpening"], [146, "interface-sharpening"]], "Example of a warning message if sharpening is adaptive but the mass conservation tolerance is not reached:": [[118, null]], "Phase Filtration": [[118, "phase-filtration"]], "Choosing Values for the Surface Tension Force Filters": [[118, "choosing-values-for-the-surface-tension-force-filters"]], "Floating Wall": [[121, "floating-wall"]], "Volume": [[122, "volume"]], "Plane": [[122, "plane"]], "List": [[122, "list"]], "File": [[122, "file"]], "Contact Detection": [[125, "contact-detection"]], "contact detection method = dynamic": [[125, "contact-detection-method-dynamic"]], "contact detection method = constant": [[125, "contact-detection-method-constant"]], "Contact and Integration Methods": [[125, "contact-and-integration-methods"]], "Load Balancing": [[125, "load-balancing"]], "load balance method = once": [[125, "load-balance-method-once"]], "load balance method = frequent": [[125, "load-balance-method-frequent"]], "load balance method = dynamic": [[125, "load-balance-method-dynamic"]], "Adaptive Sparse Contacts (ASC)": [[125, "adaptive-sparse-contacts-asc"]], "Lagrangian post-processing": [[126, "lagrangian-post-processing"]], "Force chains post-processing": [[126, "force-chains-post-processing"]], "Test": [[129, "test"]], "Parameters Guide": [[131, "parameters-guide"]], "FEM Reconstruction": [[133, "fem-reconstruction"]], "Sharp-Immersed-Boundary": [[137, "sharp-immersed-boundary"]], "Publications": [[141, "publications"]], "2024": [[141, "id1"]], "2023": [[141, "id2"]], "2022": [[141, "id3"]], "2020": [[141, "id4"]], "Preprints": [[141, "preprints"]], "Referencing Lethe": [[142, "referencing-lethe"]], "Main Articles": [[142, "main-articles"]], "Discrete Element Method": [[142, "discrete-element-method"]], "Sharp-Edge Immersed Boundary Method": [[142, "sharp-edge-immersed-boundary-method"]], "Nitsche Immersed Boundary Method": [[142, "nitsche-immersed-boundary-method"]], "Non-Newtonian Fluids": [[142, "non-newtonian-fluids"]], "Radioactive Particle Tracking": [[142, "radioactive-particle-tracking"]], "Folder Structure of Lethe": [[143, "folder-structure-of-lethe"]], "The Lethe Folder": [[143, "the-lethe-folder"]], "Applications and Their Tests": [[143, "applications-and-their-tests"]], "The include and the source Folders": [[143, "the-include-and-the-source-folders"]], "The tests Folder": [[143, "the-tests-folder"]], "The prototypes Folder": [[143, "the-prototypes-folder"]], "The contrib Folder": [[143, "the-contrib-folder"]], "The doc Folder": [[143, "the-doc-folder"]], "The examples Folder": [[143, "the-examples-folder"]], "The logo Folder": [[143, "the-logo-folder"]], "The build Folder": [[143, "the-build-folder"]], "Cahn-Hilliard Method": [[144, "cahn-hilliard-method"]], "Finite Element Formulation": [[144, "finite-element-formulation"], [146, "finite-element-formulation"], [162, "finite-element-formulation"]], "Coupling to the Navier-Stokes equations": [[144, "coupling-to-the-navier-stokes-equations"]], "One-Fluid Models": [[145, "one-fluid-models"]], "The Volume of Fluid (VOF) Method": [[146, "the-volume-of-fluid-vof-method"]], "Interface Diffusion and Sharpening": [[146, "interface-diffusion-and-sharpening"]], "Interface Filtration": [[146, "interface-filtration"]], "Surface Tension": [[146, "surface-tension"]], "Normal and Curvature Computations": [[146, "normal-and-curvature-computations"]], "Contact Force and Torque Models": [[148, "contact-force-and-torque-models"]], "Relative Velocities": [[148, "relative-velocities"]], "Spring and damping constants": [[148, "spring-and-damping-constants"]], "Spring and damping Models used in Lethe.": [[148, "id20"]], "Coulomb\u2019s limit": [[148, "coulomb-s-limit"]], "Tangential torque": [[148, "tangential-torque"]], "Rolling friction models": [[148, "rolling-friction-models"]], "Rolling Friction Models used in Lethe.": [[148, "id21"]], "Cohesive force models": [[148, "cohesive-force-models"]], "Johnson-Kendall-Roberts force model": [[148, "johnson-kendall-roberts-force-model"]], "Derjaguin-Muller-Toporov force model": [[148, "derjaguin-muller-toporov-force-model"]], "Integration Methods": [[148, "integration-methods"]], "Particles": [[150, "particles"]], "Volume Average Navier-Stokes": [[150, "volume-average-navier-stokes"]], "The Particle Centroid Method": [[150, "the-particle-centroid-method"]], "The Satellite Point Method": [[150, "the-satellite-point-method"]], "The Quadrature Centered Method": [[150, "the-quadrature-centered-method"]], "Multiphase": [[151, "multiphase"], [167, "multiphase"]], "Electromagnetism": [[152, "electromagnetism"]], "Magnetohydrodynamics Equations": [[153, "magnetohydrodynamics-equations"]], "Time Harmonic Maxwell\u2019s Equations": [[154, "time-harmonic-maxwell-s-equations"]], "Finite Element Method for Time-Harmonic Maxwell\u2019s Equations": [[155, "finite-element-method-for-time-harmonic-maxwell-s-equations"]], "Origin of the Finite Element Formulation": [[156, "origin-of-the-finite-element-formulation"]], "Solving the Non-linear Problem": [[156, "solving-the-non-linear-problem"]], "Fluid Dynamics": [[157, "fluid-dynamics"]], "Linear Solvers": [[158, "linear-solvers"]], "General Theory on Krylov Methods": [[158, "general-theory-on-krylov-methods"]], "Generalized Minimal Residual Method (GMRES)": [[158, "generalized-minimal-residual-method-gmres"]], "Biconjugate Gradient Stabilized Method (BiCGStab)": [[158, "biconjugate-gradient-stabilized-method-bicgstab"]], "Some Remarks": [[158, "some-remarks"]], "Preconditioners": [[158, "preconditioners"]], "Incomplete LU Factorization (ILU)": [[158, "incomplete-lu-factorization-ilu"]], "Algebraic Multigrid (AMG)": [[158, "algebraic-multigrid-amg"]], "The Incompressible Navier-Stokes Equations": [[159, "the-incompressible-navier-stokes-equations"]], "Rheology and Non-Newtonian Fluids": [[160, "rheology-and-non-newtonian-fluids"]], "On the Need for Stabilization": [[161, "on-the-need-for-stabilization"]], "SUPG/PSPG Monolithic Formulation": [[161, "supg-pspg-monolithic-formulation"]], "Grad-Div Block Formulation": [[161, "grad-div-block-formulation"]], "Galerkin Least-Squares Formulation": [[161, "galerkin-least-squares-formulation"]], "Heat Transfer Equations": [[162, "heat-transfer-equations"]], "Stabilization Techniques": [[162, "stabilization-techniques"]], "Passive Tracer": [[165, "passive-tracer"]], "Passive Tracer Equations": [[166, "passive-tracer-equations"]], "Theory": [[167, "theory"]], "How to Automatically Create and Launch Lethe Simulations": [[168, "how-to-automatically-create-and-launch-lethe-simulations"]], "Generate Automatically Multiple Cases": [[168, "generate-automatically-multiple-cases"]], "Locally": [[168, "locally"], [168, "id1"]], "On Digital Alliance of Canada clusters": [[168, "on-digital-alliance-of-canada-clusters"], [168, "id2"]], "Launch Automatically Multiple Cases": [[168, "launch-automatically-multiple-cases"]], "Introduction on How to Use GMSH": [[169, "introduction-on-how-to-use-gmsh"]], "Geometry": [[169, "geometry"]], "Create and Edit the .geo File": [[169, "create-and-edit-the-geo-file"]], "Built-in kernel": [[169, "built-in-kernel"]], "OpenCASCADE Kernel": [[169, "opencascade-kernel"]], "Import CAD File": [[169, "import-cad-file"]], "Physical Groups": [[169, "physical-groups"]], "Unstructured": [[169, "unstructured"]], "Attractors for Local Mesh Refinement": [[169, "attractors-for-local-mesh-refinement"]], "Structured - Quad Mesh": [[169, "structured-quad-mesh"]], "Boundary Layer Mesh": [[169, "boundary-layer-mesh"]], "Other Tips": [[169, "other-tips"]], "Introduction on How to Use Pointwise": [[170, "introduction-on-how-to-use-pointwise"]], "Basics": [[170, "basics"]], "Moving Around": [[170, "moving-around"]], "Entities": [[170, "entities"]], "Menu Bar": [[170, "menu-bar"]], "Toolbar": [[170, "toolbar"]], "Useful Shortcuts": [[170, "useful-shortcuts"]], "Making your first 2D Geometry": [[170, "making-your-first-2d-geometry"]], "Assembling the geometry": [[170, "assembling-the-geometry"]], "Generating the mesh": [[170, "generating-the-mesh"]], "Assigning the boundary conditions and exporting the mesh": [[170, "assigning-the-boundary-conditions-and-exporting-the-mesh"]], "Moving to 3D": [[170, "moving-to-3d"]], "Extrusions": [[170, "extrusions"]], "Filling the center": [[170, "filling-the-center"]], "Remote Data Visualization on ParaView": [[171, "remote-data-visualization-on-paraview"]], "Client-server visualization": [[171, "client-server-visualization"]], "Splitting the output files in groups": [[171, "splitting-the-output-files-in-groups"]], "Post-processing Lethe with PyVista": [[172, "post-processing-lethe-with-pyvista"]], "Importing lethe_pyvista_tools": [[172, "importing-lethe-pyvista-tools"]], "Installing": [[172, "installing"]], "Importing without installing": [[172, "importing-without-installing"]], "Using lethe_pyvista_tools": [[172, "using-lethe-pyvista-tools"]], "Tools": [[173, "tools"]], "Updating Test Results": [[174, "updating-test-results"]], "Usage": [[174, "usage"]]}, "indexentries": {}})
\ No newline at end of file
+Search.setIndex({"docnames": ["applications", "contributing", "examples/dem/bouncing-particle/bouncing-particle", "examples/dem/bunny-drill/bunny-drill", "examples/dem/dem", "examples/dem/granular-dam-break/granular-dam-break", "examples/dem/granular-mixer/granular-mixer", "examples/dem/oblique-wall-impact/oblique-wall-impact", "examples/dem/packing-in-ball/packing-in-ball", "examples/dem/packing-in-circle/packing-in-circle", "examples/dem/rectangular-hopper/rectangular-hopper", "examples/dem/rotating-drum-with-postprocessing/rotating-drum-with-postprocessing", "examples/dem/rotating-drum/rotating-drum", "examples/dem/rotation-of-box/rotation-of-box", "examples/dem/silo/silo", "examples/dem/small-scale-rotating-drum-postprocessing/small-scale-rotating-drum-postprocessing", "examples/dem/small-scale-rotating-drum/small-scale-rotating-drum", "examples/examples", "examples/incompressible-flow/2d-backward-facing-step/2d-backward-facing-step", 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113, 115, 117, 122, 143, 148, 150, 154, 155, 158, 160, 161, 162, 174], "problem": [0, 5, 8, 9, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 38, 39, 40, 41, 43, 44, 45, 46, 47, 48, 51, 53, 54, 58, 59, 60, 61, 62, 64, 67, 68, 71, 72, 73, 74, 75, 76, 77, 78, 80, 82, 89, 90, 91, 93, 97, 100, 101, 102, 103, 105, 107, 108, 109, 112, 113, 117, 119, 137, 141, 142, 143, 144, 146, 155, 158, 159, 160, 161, 162, 167, 169, 170, 171], "want": [0, 15, 19, 25, 27, 28, 35, 44, 62, 67, 68, 70, 71, 72, 74, 76, 82, 83, 84, 86, 87, 97, 118, 122, 128, 138, 140, 143, 156, 168, 169, 170, 172], "solv": [0, 18, 21, 22, 23, 26, 27, 28, 31, 33, 35, 41, 49, 51, 53, 55, 61, 67, 68, 71, 72, 73, 75, 76, 79, 80, 91, 93, 95, 100, 102, 103, 105, 106, 107, 108, 109, 114, 115, 137, 144, 148, 150, 154, 155, 158, 159, 161, 162, 167, 169, 170, 171], "onc": [0, 1, 2, 3, 7, 12, 14, 16, 18, 23, 26, 28, 30, 49, 74, 80, 86, 87, 106, 137, 143, 171, 172], "i": [0, 1, 2, 3, 5, 6, 7, 8, 9, 10, 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95, 97, 102, 103, 105, 107, 108, 109, 110, 111, 113, 115, 118, 119, 121, 122, 123, 125, 126, 128, 133, 136, 137, 138, 140, 143, 144, 148, 150, 158, 161, 168, 169, 171], "provid": [0, 2, 7, 10, 15, 18, 19, 20, 22, 23, 25, 28, 35, 44, 48, 49, 51, 56, 58, 80, 83, 99, 104, 105, 111, 114, 122, 126, 134, 138, 167, 168, 169, 170], "fluid": [0, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 35, 36, 38, 39, 40, 41, 43, 44, 45, 47, 48, 49, 51, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 84, 88, 89, 90, 91, 92, 93, 94, 95, 98, 100, 101, 102, 105, 106, 107, 108, 109, 110, 113, 114, 116, 137, 138, 139, 141, 143, 144, 150, 151, 159, 162, 164, 167, 168, 169], "thi": [0, 1, 79, 80, 82, 83, 84, 85, 86, 87, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 132, 133, 134, 135, 136, 137, 138, 140, 141, 143, 144, 146, 148, 150, 154, 155, 156, 158, 159, 160, 161, 162, 167, 168, 169, 170, 171, 172, 174], "navier": [0, 18, 20, 23, 28, 30, 35, 41, 43, 47, 48, 59, 61, 62, 64, 67, 68, 70, 71, 72, 73, 79, 80, 100, 102, 106, 108, 109, 113, 114, 117, 137, 138, 139, 141, 142, 143, 146, 156, 157, 158, 160, 161, 164, 167], "stoke": [0, 18, 20, 23, 28, 30, 35, 41, 43, 47, 48, 59, 61, 62, 64, 67, 68, 70, 71, 72, 73, 79, 80, 100, 102, 106, 108, 109, 113, 114, 117, 137, 138, 139, 141, 142, 143, 146, 156, 157, 158, 160, 161, 164, 167], "equat": [0, 9, 18, 20, 23, 25, 28, 30, 34, 35, 39, 40, 41, 43, 48, 49, 54, 56, 59, 72, 78, 79, 80, 93, 97, 98, 100, 101, 102, 106, 107, 108, 109, 113, 114, 115, 117, 118, 137, 138, 141, 142, 146, 148, 150, 152, 156, 157, 158, 160, 161, 163, 164, 165, 167], "monolith": [0, 114], "wai": [0, 1, 9, 15, 18, 25, 26, 28, 33, 44, 48, 51, 53, 56, 58, 59, 67, 68, 73, 74, 75, 76, 78, 82, 87, 101, 102, 103, 109, 110, 119, 122, 137, 148, 150, 158, 170, 172], "most": [0, 4, 5, 9, 10, 18, 19, 20, 22, 23, 26, 27, 28, 29, 35, 36, 37, 53, 60, 67, 68, 72, 73, 74, 75, 78, 84, 87, 102, 104, 112, 114, 115, 118, 125, 137, 143, 150, 154, 155, 159, 167, 170], "robust": [0, 18, 20, 25, 28, 29, 35, 49, 68, 81, 114, 158, 160], "dynam": [0, 3, 5, 8, 9, 10, 12, 13, 14, 16, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 35, 37, 40, 41, 43, 44, 45, 46, 47, 53, 62, 67, 68, 72, 73, 74, 75, 76, 81, 90, 94, 101, 102, 105, 106, 107, 108, 109, 110, 113, 116, 137, 141, 142, 144, 146, 150, 159, 162, 164, 167], "solver": [0, 1, 2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 17, 19, 22, 23, 24, 26, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 59, 60, 61, 62, 64, 70, 71, 77, 79, 80, 81, 82, 90, 94, 97, 98, 99, 101, 105, 106, 107, 110, 114, 118, 120, 122, 127, 131, 135, 137, 138, 139, 140, 141, 142, 143, 148, 157, 161, 164, 167, 170], "block": [0, 1, 15, 20, 23, 26, 39, 40, 41, 43, 51, 70, 80, 98, 102, 108, 114, 115, 170], "precondition": [0, 18, 20, 21, 25, 28, 29, 30, 67, 68, 72, 73, 75, 76, 78, 108, 115], "matrix": [0, 21, 27, 29, 31, 36, 41, 64, 67, 68, 72, 74, 75, 76, 78, 90, 97, 102, 108, 113, 114, 115, 137, 138, 156, 158, 161], "free": [0, 1, 3, 21, 24, 28, 29, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 59, 67, 68, 71, 83, 84, 90, 91, 100, 101, 102, 105, 106, 108, 109, 113, 114, 144, 146, 154, 158], "approach": [0, 18, 22, 23, 29, 33, 36, 37, 46, 48, 49, 56, 61, 67, 97, 109, 140, 150, 156, 158, 161], "nitsch": [0, 59, 60, 81, 90, 94, 110, 141, 150], "impos": [0, 16, 19, 20, 21, 23, 28, 36, 41, 44, 46, 53, 54, 59, 61, 72, 74, 76, 89, 90, 91, 95, 97, 100, 101, 107, 137, 146, 155, 156, 158], "immers": [0, 17, 19, 25, 41, 49, 62, 65, 67, 68, 70, 71, 81, 94, 110, 131, 141, 169], "boundari": [0, 3, 5, 8, 9, 11, 14, 17, 33, 37, 41, 43, 46, 65, 70, 81, 92, 94, 97, 99, 103, 104, 109, 110, 112, 120, 122, 124, 126, 127, 131, 139, 141, 143, 144, 146, 150, 155, 156, 161, 162, 168], "condit": [0, 9, 15, 43, 82, 93, 94, 97, 99, 102, 105, 106, 107, 108, 109, 110, 112, 113, 114, 118, 120, 122, 137, 139, 143, 144, 146, 148, 150, 155, 156, 158, 161, 162, 168, 169], "without": [0, 1, 9, 15, 19, 22, 23, 26, 29, 37, 45, 48, 67, 68, 70, 72, 73, 81, 82, 83, 84, 87, 106, 107, 115, 118, 137, 138, 156, 169, 170], "discret": [0, 5, 10, 16, 17, 25, 28, 29, 48, 55, 62, 67, 68, 81, 107, 125, 131, 141, 147, 150, 151, 156, 158, 161, 167], "method": [0, 2, 3, 5, 7, 8, 9, 10, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 53, 54, 55, 58, 59, 61, 64, 65, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 81, 87, 90, 93, 97, 98, 102, 105, 106, 107, 108, 109, 112, 114, 115, 118, 122, 127, 131, 132, 134, 135, 136, 137, 140, 141, 145, 147, 151, 152, 156, 161, 164, 167, 170], "particl": [0, 3, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 22, 29, 58, 59, 60, 61, 64, 66, 70, 72, 73, 75, 76, 77, 79, 81, 90, 97, 101, 107, 110, 116, 119, 120, 121, 122, 123, 124, 125, 126, 127, 129, 131, 133, 134, 136, 137, 138, 139, 140, 141, 148, 167], "allow": [0, 2, 3, 9, 10, 18, 19, 20, 21, 23, 26, 27, 28, 29, 30, 31, 34, 35, 40, 45, 48, 54, 56, 60, 61, 67, 68, 71, 72, 73, 74, 75, 76, 77, 78, 84, 92, 100, 102, 104, 108, 112, 116, 117, 122, 136, 137, 138, 140, 146, 150, 158, 161, 168, 169, 171], "run": [0, 1, 15, 67, 68, 80, 81, 84, 85, 86, 87, 104, 111, 112, 115, 118, 131, 133, 136, 143, 168, 170, 171, 172], "unresolv": [0, 16, 17, 72, 73, 74, 75, 76, 77, 78, 81, 131, 138, 141, 147, 151, 167], "comput": [0, 5, 7, 9, 12, 14, 18, 19, 20, 21, 22, 23, 25, 26, 27, 29, 30, 31, 34, 35, 37, 45, 46, 48, 49, 51, 53, 54, 58, 61, 67, 68, 73, 74, 75, 78, 81, 83, 86, 87, 90, 91, 99, 102, 104, 105, 106, 107, 108, 109, 110, 112, 118, 122, 125, 141, 142, 148, 150, 154, 158, 167, 171], "element": [0, 1, 5, 9, 10, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 40, 46, 48, 51, 55, 61, 64, 67, 68, 71, 72, 76, 81, 94, 100, 101, 102, 104, 105, 112, 114, 115, 125, 131, 133, 137, 138, 140, 141, 143, 147, 150, 151, 152, 157, 158, 161, 163, 164, 167, 169, 170], "simul": [0, 1, 15, 59, 60, 62, 64, 70, 81, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 104, 105, 106, 107, 108, 110, 111, 113, 115, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 128, 129, 130, 131, 135, 137, 138, 139, 140, 141, 142, 143, 150, 159, 160, 167, 170, 171, 173], "sharp": [0, 17, 25, 34, 37, 45, 46, 49, 54, 65, 67, 68, 70, 71, 81, 90, 102, 108, 109, 118, 131, 140, 141, 146, 150], "edg": [0, 21, 24, 25, 56, 81, 108, 137, 169, 170], "van": [0, 35, 44, 67, 68, 72, 75, 76, 77, 78, 79, 138, 139, 148, 150], "volum": [0, 3, 5, 8, 9, 10, 12, 13, 14, 16, 33, 34, 35, 36, 37, 41, 44, 45, 46, 47, 48, 51, 53, 54, 67, 68, 72, 73, 75, 76, 77, 78, 79, 94, 95, 101, 106, 109, 110, 123, 128, 137, 138, 139, 140, 141, 142, 144, 145, 151, 161, 167, 169, 170], "averag": [0, 9, 11, 21, 24, 27, 29, 44, 56, 72, 73, 76, 77, 78, 79, 97, 106, 110, 123, 125, 126, 137, 138, 139, 141, 142, 156, 170], "rpt": [0, 17, 81, 131, 133, 134, 143], "3d": [0, 2, 3, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31, 44, 49, 51, 52, 55, 56, 58, 65, 88, 89, 90, 101, 102, 105, 107, 112, 113, 116, 128, 131, 133, 135, 137, 139, 140, 143, 159, 169, 172], "beam": [0, 39, 40, 56, 58, 101, 132, 136], "mont": [0, 55, 58, 132, 134, 136], "carlo": [0, 55, 58, 132, 134, 136], "model": [0, 2, 28, 29, 30, 33, 34, 35, 36, 39, 40, 41, 44, 46, 48, 49, 54, 55, 56, 59, 60, 61, 62, 63, 64, 68, 71, 77, 93, 100, 101, 110, 116, 117, 118, 120, 123, 126, 132, 136, 137, 138, 139, 141, 142, 144, 146, 150, 151, 160, 167], "interact": [0, 35, 44, 46, 48, 56, 58, 64, 68, 73, 74, 84, 109, 118, 134, 138, 148, 150, 171], "between": [0, 2, 3, 5, 7, 9, 12, 15, 18, 19, 21, 22, 23, 24, 27, 28, 30, 31, 33, 34, 35, 36, 37, 40, 41, 44, 45, 46, 47, 48, 51, 53, 54, 55, 56, 58, 61, 62, 67, 68, 70, 71, 74, 78, 90, 91, 92, 93, 100, 101, 103, 105, 108, 109, 111, 112, 118, 122, 124, 125, 126, 128, 137, 138, 140, 143, 144, 146, 148, 150, 158, 167, 169, 170], "gamma": [0, 19, 28, 55, 56, 58, 90, 109, 110, 132, 136, 138, 144, 146, 148, 155, 156, 160, 161, 162], "rai": [0, 55, 56, 58, 132, 134, 136], "emit": [0, 39, 40, 55, 56, 58, 101, 136], "detector": [0, 133, 134, 135, 136], "cell": [0, 8, 9, 10, 11, 12, 14, 16, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30, 31, 37, 41, 45, 49, 52, 55, 67, 68, 71, 72, 74, 76, 77, 92, 93, 95, 100, 102, 103, 104, 105, 107, 109, 112, 118, 122, 124, 125, 126, 133, 137, 138, 140, 144, 146, 150, 161, 169, 170, 171], "reconstruct": [0, 45, 72, 76, 135, 141, 142], "posit": [0, 2, 9, 15, 20, 21, 22, 23, 27, 28, 33, 36, 37, 41, 45, 48, 55, 56, 58, 59, 62, 64, 67, 68, 70, 71, 74, 90, 91, 101, 110, 122, 132, 133, 135, 136, 137, 138, 141, 142, 150, 158, 170], "cellular": 0, "decomposit": [0, 18, 102, 158], "fem": [0, 21, 62, 90, 94, 114, 135, 137, 139, 143, 155, 156, 167, 171], "from": [0, 1, 2, 3, 4, 5, 7, 9, 10, 12, 13, 14, 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17, 37, 40, 45, 55, 56, 58, 61, 81, 105, 110, 131, 134, 141, 150], "l2": [0, 22, 26, 55, 73, 74, 75, 78, 89, 100, 108, 110, 133, 134, 140], "project": [0, 33, 35, 44, 45, 46, 48, 55, 61, 72, 73, 75, 76, 81, 83, 84, 100, 110, 118, 133, 140, 146, 150, 170], "calcul": [0, 2, 11, 15, 18, 19, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31, 34, 35, 36, 39, 40, 41, 44, 45, 46, 48, 54, 55, 61, 62, 64, 67, 68, 72, 73, 74, 75, 76, 77, 78, 89, 90, 94, 97, 101, 106, 107, 108, 109, 110, 113, 115, 118, 126, 132, 133, 134, 135, 136, 137, 138, 140, 141, 142, 148, 150, 158, 169], "volumetr": [0, 27, 34, 74, 101, 110, 146, 154], "finit": [0, 19, 40, 46, 48, 49, 51, 55, 81, 94, 101, 104, 128, 138, 143, 150, 152, 157, 161, 163, 164, 167], "mesh": [0, 1, 43, 55, 58, 59, 70, 80, 89, 92, 93, 94, 96, 98, 102, 103, 107, 112, 115, 118, 120, 128, 133, 137, 138, 139, 140, 143, 150, 168, 172], "an": [0, 1, 2, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 39, 40, 43, 44, 45, 46, 47, 48, 49, 51, 52, 53, 54, 55, 56, 58, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 81, 82, 83, 84, 86, 87, 89, 90, 93, 95, 97, 98, 99, 100, 102, 103, 105, 106, 108, 109, 110, 111, 112, 114, 115, 116, 117, 118, 119, 122, 123, 125, 128, 131, 135, 137, 138, 140, 141, 142, 144, 146, 148, 150, 154, 156, 158, 160, 161, 162, 167, 168, 169, 170, 171], "check": [1, 10, 14, 16, 28, 44, 48, 61, 67, 68, 72, 73, 74, 75, 76, 78, 110, 111, 113, 118, 124, 125, 131, 169, 170, 172], "util": [1, 29, 31, 83, 143, 168, 169, 174], "repositori": [1, 15, 29, 82, 83, 84, 87], "addit": [1, 10, 12, 15, 18, 19, 22, 23, 28, 35, 39, 44, 51, 56, 60, 70, 71, 72, 73, 75, 76, 77, 80, 83, 98, 101, 102, 104, 106, 107, 109, 112, 116, 117, 118, 124, 137, 140, 143, 144, 158, 160, 161], "case": [1, 80, 86, 87, 90, 91, 93, 96, 101, 103, 104, 105, 107, 108, 109, 112, 114, 122, 123, 125, 128, 137, 138, 140, 144, 146, 148, 150, 158, 159, 160, 161, 169, 170, 171, 172], "script": [1, 2, 7, 10, 15, 18, 20, 21, 23, 25, 28, 30, 31, 33, 34, 35, 36, 37, 41, 44, 45, 46, 47, 48, 49, 54, 56, 58, 61, 64, 74, 78, 83, 87, 122, 137, 143, 168, 169, 170, 172, 174], "geo": [1, 5, 18, 19, 21, 24, 25, 26, 28, 29, 33, 36, 51, 168], "file": [1, 80, 82, 84, 86, 87, 89, 93, 96, 99, 102, 103, 104, 107, 109, 110, 111, 112, 115, 126, 127, 128, 131, 132, 133, 134, 135, 136, 137, 138, 140, 143, 168, 170, 172, 174], "should": [1, 7, 8, 9, 12, 14, 16, 18, 19, 21, 22, 26, 27, 28, 35, 36, 37, 40, 43, 48, 49, 53, 56, 59, 67, 68, 71, 72, 73, 74, 75, 76, 77, 78, 80, 82, 83, 84, 86, 87, 88, 90, 91, 92, 93, 95, 97, 98, 99, 101, 102, 103, 104, 105, 106, 107, 108, 109, 111, 112, 114, 118, 119, 121, 122, 123, 124, 125, 127, 133, 137, 138, 143, 150, 155, 158, 159, 168, 169, 170, 171], "onli": [1, 2, 6, 7, 8, 9, 10, 11, 14, 15, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 31, 39, 41, 43, 44, 48, 49, 53, 56, 59, 60, 61, 62, 64, 67, 68, 70, 72, 74, 75, 77, 80, 82, 83, 84, 87, 90, 91, 95, 97, 101, 102, 103, 104, 106, 107, 108, 109, 110, 111, 112, 114, 115, 118, 119, 122, 124, 125, 126, 128, 133, 134, 137, 139, 140, 143, 146, 148, 150, 158, 161, 168, 169, 170, 171, 174], "either": [1, 9, 18, 22, 31, 35, 82, 85, 90, 93, 100, 102, 109, 111, 118, 128, 135, 137, 150, 158, 169, 174], "fix": [1, 19, 22, 23, 24, 25, 27, 31, 37, 47, 53, 90, 108, 112, 119, 140, 158], "issu": [1, 20, 28, 60, 82, 102, 103, 158], "add": [1, 11, 14, 22, 24, 27, 28, 35, 41, 51, 70, 82, 83, 84, 86, 87, 89, 106, 107, 114, 143, 144, 146, 148, 150, 158, 168, 169, 170, 171], "singl": [1, 2, 5, 7, 8, 15, 20, 26, 30, 35, 45, 47, 51, 56, 67, 68, 72, 73, 74, 75, 79, 80, 81, 84, 87, 90, 109, 112, 117, 122, 127, 135, 137, 143, 144, 150, 159, 168], "featur": [1, 80, 95, 102, 106, 108, 109, 111, 119, 122, 124, 125, 126, 137, 142, 148, 158], "restructur": 1, "one": [1, 2, 3, 5, 7, 9, 10, 15, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30, 31, 35, 36, 43, 49, 51, 53, 56, 59, 60, 61, 62, 67, 68, 70, 72, 73, 74, 75, 76, 78, 80, 81, 83, 84, 87, 90, 92, 95, 98, 99, 100, 102, 104, 105, 107, 108, 109, 110, 111, 112, 115, 118, 119, 122, 125, 131, 134, 137, 138, 140, 143, 144, 148, 150, 154, 155, 158, 161, 167, 168, 169, 171], "aspect": [1, 27, 33, 51, 59, 80, 131, 137, 170], "plu": [1, 84, 126], "test": [1, 2, 7, 15, 18, 24, 27, 33, 34, 35, 47, 49, 53, 54, 80, 81, 82, 87, 97, 100, 108, 109, 114, 115, 118, 120, 144, 146, 155, 156, 158, 162, 173], "need": [1, 2, 5, 6, 7, 9, 10, 12, 14, 15, 16, 19, 20, 21, 22, 23, 27, 28, 29, 33, 34, 35, 44, 45, 47, 54, 59, 61, 64, 67, 68, 72, 73, 74, 75, 76, 77, 78, 82, 83, 84, 86, 87, 91, 92, 104, 111, 114, 119, 121, 128, 134, 137, 144, 146, 148, 150, 157, 158, 164, 167, 168, 169, 170, 171, 172], "certifi": 1, "If": [1, 9, 14, 15, 19, 20, 26, 27, 28, 30, 35, 37, 44, 48, 51, 53, 60, 70, 72, 73, 74, 75, 76, 80, 83, 84, 86, 87, 89, 97, 99, 101, 102, 104, 105, 107, 108, 110, 112, 113, 118, 119, 122, 123, 125, 127, 129, 130, 137, 138, 140, 142, 143, 144, 150, 158, 168, 169, 170, 171, 172, 174], "ar": [1, 2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 80, 81, 82, 83, 84, 86, 87, 88, 89, 90, 91, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 128, 129, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 143, 144, 146, 148, 150, 154, 155, 156, 158, 161, 162, 167, 168, 169, 170, 171, 172, 174], "mani": [1, 23, 31, 36, 47, 51, 67, 68, 74, 84, 104, 169], "chang": [1, 5, 15, 16, 18, 19, 20, 21, 24, 26, 27, 29, 34, 35, 36, 39, 40, 41, 43, 46, 48, 49, 53, 56, 58, 61, 67, 68, 71, 74, 82, 84, 86, 90, 91, 101, 102, 107, 108, 117, 140, 144, 146, 158, 168, 169, 170, 174], "better": [1, 3, 12, 18, 20, 21, 22, 23, 26, 29, 30, 39, 40, 41, 45, 56, 61, 71, 87, 125, 138, 146, 158, 159, 169], "creat": [1, 2, 6, 7, 8, 10, 12, 15, 16, 19, 21, 28, 31, 41, 43, 49, 51, 53, 59, 61, 62, 67, 68, 70, 73, 75, 76, 77, 80, 81, 82, 84, 86, 87, 90, 91, 100, 103, 104, 111, 112, 115, 127, 137, 144, 158, 167, 170, 173], "multipl": [1, 15, 20, 24, 28, 29, 35, 44, 60, 61, 67, 68, 70, 83, 84, 87, 99, 105, 107, 112, 137, 143, 146, 154, 158, 167, 169, 171, 172], "branch": [1, 83, 86], "The": [1, 2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 86, 87, 88, 89, 90, 91, 92, 93, 95, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 144, 145, 148, 151, 154, 155, 156, 157, 158, 160, 161, 162, 164, 167, 168, 169, 170, 171, 172, 174], 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110, 127, 168, 169, 172], "befor": [1, 7, 8, 10, 14, 15, 18, 19, 27, 28, 29, 35, 36, 44, 53, 56, 67, 68, 73, 78, 92, 100, 104, 105, 111, 121, 122, 127, 128, 133, 137, 143, 156, 158, 168, 169, 170, 174], "pr": [1, 36, 55], "compat": [1, 51, 62, 74, 86, 87, 122, 137, 143], "download_clang_format": 1, "compile_clang_format": 1, "For": [1, 6, 8, 9, 12, 15, 18, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 33, 34, 35, 41, 44, 45, 47, 48, 49, 51, 53, 54, 59, 61, 64, 67, 68, 70, 71, 72, 73, 75, 76, 77, 78, 80, 83, 84, 86, 87, 90, 91, 92, 93, 95, 96, 98, 100, 101, 102, 103, 104, 105, 107, 108, 109, 110, 112, 113, 115, 118, 119, 121, 122, 123, 124, 125, 126, 128, 133, 137, 138, 143, 144, 148, 150, 154, 155, 156, 158, 159, 160, 162, 167, 168, 169, 170, 171, 172], "paramet": [1, 15, 62, 80, 81, 83, 84, 88, 89, 90, 91, 92, 93, 95, 97, 98, 100, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 117, 118, 119, 120, 121, 122, 123, 124, 126, 127, 128, 133, 135, 137, 138, 139, 140, 143, 144, 146, 148, 150, 158, 160, 161, 168, 169, 171], "specif": [1, 2, 7, 9, 18, 20, 27, 31, 34, 36, 40, 41, 43, 49, 51, 54, 56, 58, 72, 80, 83, 84, 90, 92, 97, 102, 122, 132, 137, 148, 150, 158, 168, 169, 170, 172], "prmindent": 1, "name_of_fil": 1, "prm": [1, 2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 80, 83, 84, 93, 102, 110, 118, 126, 131, 134, 137, 143, 168, 169], "At": [1, 6, 9, 20, 26, 28, 33, 37, 44, 45, 46, 53, 54, 56, 67, 68, 76, 82, 86, 87, 91, 93, 98, 105, 109, 115, 118, 122, 128, 137, 143, 158, 170], "least": [1, 9, 18, 21, 28, 55, 59, 61, 67, 68, 70, 80, 90, 92, 95, 102, 105, 114, 118, 122, 137, 150, 169], "2": [1, 2, 3, 5, 6, 7, 8, 9, 10, 12, 13, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 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138, 143, 144, 146, 148, 150, 155, 158, 167, 168, 169, 170, 171, 172], "bigger": [1, 21, 27, 73, 75, 76, 122, 169], "architectur": [1, 82], "reconfigur": [1, 174], "notifi": 1, "open": [1, 5, 15, 18, 27, 29, 31, 33, 56, 61, 64, 67, 68, 80, 81, 82, 83, 86, 87, 112, 138, 141, 142, 148, 167, 168, 169, 170, 171], "select": [1, 9, 14, 18, 25, 28, 33, 34, 35, 40, 41, 48, 51, 56, 61, 72, 73, 75, 76, 78, 87, 91, 95, 100, 101, 117, 122, 123, 127, 133, 137, 150, 169, 170, 171], "alreadi": [1, 21, 24, 27, 72, 73, 74, 75, 76, 84, 87, 89, 122, 140, 141, 146, 169], "exist": [1, 24, 27, 31, 43, 53, 81, 84, 87, 90, 91, 103, 112, 137, 140, 144, 150, 169, 174], "contributor": [1, 81], "see": [1, 2, 3, 10, 12, 16, 18, 19, 20, 21, 22, 23, 24, 26, 27, 28, 29, 31, 33, 35, 36, 41, 43, 44, 45, 48, 49, 51, 53, 56, 58, 59, 61, 64, 68, 71, 74, 77, 82, 83, 84, 86, 87, 90, 91, 92, 93, 95, 100, 102, 103, 105, 106, 107, 108, 109, 110, 111, 113, 114, 118, 125, 126, 127, 137, 144, 146, 148, 150, 158, 168, 169, 170], 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169], "citat": 1, "parallel": [1, 2, 6, 7, 8, 12, 14, 19, 21, 24, 25, 26, 28, 29, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 53, 54, 70, 71, 72, 73, 74, 75, 76, 77, 78, 83, 104, 112, 125, 138, 141, 142, 146, 148, 161, 167, 171], "high": [1, 2, 5, 7, 12, 14, 18, 20, 21, 22, 23, 25, 26, 27, 30, 31, 47, 49, 51, 56, 61, 71, 74, 77, 78, 81, 90, 97, 98, 102, 105, 107, 112, 118, 127, 137, 138, 141, 142, 144, 148, 150, 160, 169, 171], "adapt": [1, 20, 24, 30, 31, 37, 40, 41, 43, 47, 53, 62, 64, 70, 72, 74, 76, 77, 78, 81, 83, 93, 94, 112, 127, 137, 138, 141, 142, 169], "cfd": [1, 3, 16, 17, 18, 19, 20, 23, 27, 28, 29, 30, 31, 36, 41, 49, 53, 67, 68, 81, 91, 97, 100, 104, 109, 110, 113, 122, 124, 125, 127, 128, 131, 137, 141, 151, 158, 167, 169], "incompress": [1, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 41, 43, 45, 80, 81, 138, 141, 142, 144, 150, 156, 157, 160, 161, 162, 164, 167], "flow": [1, 5, 10, 16, 17, 29, 30, 33, 34, 36, 37, 41, 44, 45, 46, 47, 48, 49, 51, 53, 54, 59, 60, 61, 67, 68, 72, 73, 75, 76, 77, 78, 79, 80, 81, 84, 90, 91, 93, 94, 95, 100, 101, 104, 105, 106, 107, 109, 110, 112, 116, 124, 137, 138, 140, 141, 142, 144, 146, 148, 150, 160, 161, 162, 167, 168, 169], "blai": [1, 14, 19, 25, 28, 29, 41, 49, 55, 78, 81, 109, 138, 141, 142, 148, 150, 167], "et": [1, 5, 10, 12, 14, 19, 20, 21, 24, 25, 27, 29, 30, 34, 35, 37, 44, 45, 46, 47, 54, 58, 67, 74, 78, 90, 101, 109, 132, 134, 136, 138, 141, 142, 148, 150, 161, 167], "al": [1, 5, 10, 12, 14, 18, 19, 20, 21, 24, 25, 27, 29, 30, 34, 35, 37, 44, 45, 46, 47, 54, 58, 67, 74, 78, 88, 90, 101, 109, 132, 134, 136, 138, 148, 150, 161, 167], "1": [1, 2, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 58, 59, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 81, 83, 86, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 109, 110, 111, 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134, 137, 138, 141, 142, 144, 146, 148, 150, 154, 155, 156, 158, 161, 167, 168, 170], "softx": [1, 138], "A": [1, 2, 5, 7, 10, 18, 19, 20, 21, 23, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 51, 53, 54, 55, 56, 58, 61, 64, 67, 68, 72, 73, 74, 75, 76, 77, 78, 84, 86, 87, 89, 92, 93, 97, 102, 103, 109, 112, 113, 117, 118, 121, 122, 127, 133, 134, 137, 138, 141, 142, 144, 146, 148, 150, 156, 158, 161, 167, 169, 170, 171], "author": 1, "paper": [1, 10, 142], "abbrevi": 1, "journal": [1, 10, 141, 142, 144, 148, 170], "pp": [1, 5, 10, 12, 14, 18, 19, 20, 21, 24, 25, 27, 28, 30, 34, 35, 37, 40, 41, 43, 44, 45, 46, 47, 48, 49, 54, 56, 58, 67, 68, 74, 101, 109, 132, 134, 136, 138, 144, 146, 148, 150, 158, 167], "xxx": 1, "month": 1, "cite": [1, 142], "notat": [1, 53, 90, 146, 159], "three": [1, 5, 8, 9, 12, 15, 16, 18, 19, 21, 24, 26, 27, 28, 29, 30, 36, 37, 39, 46, 56, 58, 61, 72, 73, 74, 75, 76, 77, 78, 86, 97, 100, 103, 108, 109, 113, 114, 120, 123, 125, 134, 137, 143, 150, 158, 170], "given": [1, 5, 9, 15, 16, 18, 20, 21, 22, 24, 26, 27, 33, 34, 37, 41, 43, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 64, 71, 73, 74, 75, 76, 83, 84, 87, 90, 91, 93, 97, 101, 102, 105, 107, 108, 109, 110, 118, 122, 125, 137, 138, 140, 144, 146, 150, 158, 161, 162, 169], "six": [1, 37, 46, 80], "These": [1, 9, 19, 21, 25, 28, 30, 33, 35, 39, 40, 49, 51, 53, 55, 56, 58, 64, 72, 73, 75, 76, 78, 82, 90, 99, 107, 110, 114, 122, 123, 124, 137, 139, 143, 148, 154, 169, 170, 171], "subhead": 1, "take": [1, 2, 6, 14, 15, 18, 19, 23, 26, 27, 28, 30, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 51, 53, 54, 62, 67, 68, 74, 75, 76, 77, 78, 80, 84, 87, 89, 97, 101, 109, 113, 115, 137, 138, 143, 144, 148, 154, 158, 159, 160, 162, 169, 171, 172], "singular": [1, 137], "plural": 1, "form": [1, 2, 9, 18, 21, 25, 30, 33, 35, 44, 56, 61, 74, 101, 109, 137, 143, 144, 146, 154, 155, 156, 159, 160, 161, 162], "feel": [1, 3, 12, 30, 31, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 83, 90], "layer": [1, 15, 21, 24, 25, 27, 74, 90, 137, 161], "structur": [1, 9, 10, 19, 25, 26, 30, 31, 33, 49, 62, 81, 87, 90, 122, 131, 148, 158, 161, 168, 170], "own": [1, 59, 95, 137, 143], "mathjax": 1, "backend": 1, "math": [1, 37, 47, 71, 96], "df": [1, 15], "frac": [1, 18, 19, 20, 21, 23, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 39, 40, 41, 43, 44, 45, 49, 53, 54, 56, 58, 59, 60, 64, 67, 68, 71, 72, 78, 90, 91, 93, 97, 101, 109, 110, 118, 122, 127, 134, 137, 138, 144, 146, 148, 150, 154, 156, 159, 160, 161, 162], "partial": [1, 28, 41, 43, 72, 90, 91, 144, 146, 150, 154, 159, 162, 167, 169], "f": [1, 12, 15, 18, 19, 25, 28, 35, 36, 41, 44, 45, 47, 49, 55, 56, 58, 109, 134, 138, 144, 146, 148, 150, 159, 167, 168, 170], "t": [1, 3, 5, 6, 15, 20, 21, 23, 24, 28, 29, 30, 31, 33, 34, 36, 37, 39, 40, 41, 43, 44, 45, 46, 48, 49, 51, 53, 54, 56, 58, 59, 64, 67, 68, 72, 78, 83, 84, 89, 90, 91, 97, 101, 109, 110, 113, 118, 137, 138, 141, 142, 144, 146, 148, 150, 154, 156, 158, 159, 161, 162], "rho": [1, 19, 25, 28, 35, 41, 43, 49, 53, 97, 109, 110, 144, 156, 159, 160, 162], "bar": [1, 74, 78, 97, 125, 169], "u": [1, 3, 9, 15, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 36, 41, 43, 44, 46, 48, 51, 53, 54, 56, 58, 59, 61, 62, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 82, 88, 89, 90, 97, 110, 118, 138, 140, 144, 146, 148, 150, 155, 158, 159, 161, 162, 168, 169, 170], "cdot": [1, 19, 28, 30, 31, 34, 41, 43, 49, 54, 56, 78, 90, 93, 100, 109, 110, 118, 137, 138, 144, 146, 150, 154, 155, 159, 161, 162], "nabla": [1, 28, 30, 31, 34, 41, 43, 49, 54, 90, 93, 100, 101, 110, 118, 144, 146, 150, 154, 155, 159, 162], "right": [1, 15, 18, 19, 20, 23, 30, 31, 33, 35, 36, 39, 40, 41, 43, 44, 45, 47, 49, 53, 56, 58, 59, 60, 62, 70, 71, 73, 74, 77, 78, 87, 97, 100, 101, 102, 103, 109, 110, 115, 118, 132, 134, 136, 137, 138, 144, 146, 148, 150, 154, 155, 156, 158, 160, 161, 162, 168, 169, 170, 171], "mu": [1, 23, 28, 39, 40, 41, 43, 90, 101, 138, 144, 148, 162], "syntax": [1, 9, 20, 28, 59, 70, 72, 107, 131, 137], "highlight": [1, 28, 29, 61, 80], "c": [1, 5, 10, 18, 19, 20, 21, 25, 27, 28, 29, 34, 35, 36, 37, 40, 41, 46, 48, 54, 55, 56, 58, 61, 67, 68, 72, 78, 82, 84, 87, 109, 137, 138, 141, 142, 146, 148, 150, 158], "cpp": 1, "mode": [1, 2, 6, 8, 9, 12, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 54, 61, 72, 73, 74, 75, 76, 78, 83, 87, 102, 125, 137, 140, 171], "commonli": [1, 21, 112, 154], "show": [1, 2, 10, 15, 18, 19, 22, 23, 26, 27, 29, 30, 31, 33, 36, 37, 39, 40, 41, 43, 45, 46, 48, 51, 53, 55, 56, 61, 64, 67, 68, 72, 73, 74, 75, 76, 77, 78, 86, 87, 101, 108, 115, 118, 124, 126, 133, 134, 136, 138, 140, 146, 155, 170], "keep": [1, 5, 7, 14, 15, 18, 21, 26, 27, 33, 37, 41, 43, 45, 46, 47, 67, 68, 70, 72, 76, 77, 87, 97, 102, 108, 112, 121, 146, 158, 169], "mind": [1, 18, 158], "proper": [1, 27, 48, 97, 118, 171], "we": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 82, 83, 84, 86, 87, 90, 97, 101, 103, 107, 109, 112, 113, 114, 118, 119, 120, 121, 122, 123, 126, 128, 133, 134, 137, 138, 140, 143, 144, 146, 148, 150, 155, 156, 158, 159, 160, 161, 162, 167, 168, 169, 171, 172], "recommend": [1, 2, 6, 7, 8, 9, 10, 12, 13, 14, 20, 21, 27, 48, 72, 73, 75, 76, 77, 78, 82, 86, 87, 98, 102, 104, 109, 118, 122, 125, 126, 137, 138, 146, 158, 168], "locat": [1, 2, 3, 5, 7, 8, 9, 12, 14, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28, 29, 30, 31, 33, 34, 35, 36, 37, 41, 43, 44, 45, 46, 47, 48, 49, 51, 54, 55, 56, 58, 59, 60, 61, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 80, 83, 90, 92, 103, 107, 109, 118, 122, 132, 136, 137, 140, 146, 158, 170, 171, 172], "copi": [1, 15, 24, 61, 81, 87, 143, 168, 171, 172], "NOT": [1, 124, 126], "tab": [1, 80, 87, 143, 169], "recogn": 1, "lead": [1, 9, 19, 21, 22, 23, 25, 30, 31, 35, 36, 37, 41, 47, 49, 56, 62, 67, 72, 73, 74, 75, 78, 83, 103, 104, 107, 109, 112, 118, 122, 124, 125, 127, 137, 138, 140, 150, 156, 158, 159, 161, 170], "wrong": [1, 137, 174], "rang": [1, 9, 18, 20, 23, 27, 28, 30, 40, 41, 49, 61, 68, 95, 101, 102, 109, 118, 122, 125, 127, 137, 138, 146, 168, 169], "print": [1, 9, 15, 19, 20, 22, 23, 28, 31, 44, 64, 73, 74, 75, 76, 87, 89, 99, 102, 107, 108, 110, 118, 122, 127, 129, 130, 137], "int": [1, 20, 21, 30, 45, 46, 47, 48, 82, 138, 143, 146], "0": [1, 2, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 33, 34, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 59, 60, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 82, 83, 86, 88, 89, 90, 91, 92, 93, 95, 96, 97, 100, 101, 102, 103, 104, 105, 107, 108, 109, 110, 112, 113, 115, 116, 117, 118, 119, 121, 122, 123, 125, 127, 128, 132, 133, 136, 137, 138, 140, 144, 146, 148, 150, 154, 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35, 44, 56, 96, 121, 169], "bouncing_particle_xx": 2, "xx": [2, 7], "other": [2, 5, 6, 12, 15, 16, 18, 20, 22, 23, 24, 25, 26, 28, 29, 30, 35, 43, 44, 51, 53, 56, 59, 61, 62, 64, 67, 68, 70, 72, 73, 74, 75, 76, 78, 80, 81, 83, 84, 86, 87, 93, 98, 102, 104, 108, 109, 110, 114, 115, 118, 119, 122, 128, 137, 140, 144, 150, 155, 158, 167, 168, 170, 172], "seq": 2, "w": [2, 10, 15, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 31, 36, 40, 44, 49, 51, 59, 62, 68, 71, 73, 74, 75, 76, 77, 78, 88, 89, 90, 97, 102, 125, 138, 144, 146, 148, 150, 159, 168], "bouncing_particle_": 2, "minut": [2, 5, 7, 10, 12, 16, 24, 30, 34, 35, 37, 39, 41, 43, 44, 45, 46, 47, 54, 61, 74, 75, 76, 78, 84, 87], "out_xx": 2, "post": [2, 6, 7, 9, 15, 20, 21, 25, 33, 34, 37, 41, 47, 54, 70, 73, 76, 77, 81, 84, 94, 99, 107, 120, 143, 171, 173], "process": [2, 5, 6, 7, 8, 9, 12, 14, 15, 18, 20, 21, 25, 33, 34, 35, 37, 39, 40, 41, 43, 44, 47, 48, 54, 67, 70, 73, 76, 77, 81, 84, 86, 94, 99, 101, 102, 105, 107, 118, 120, 125, 141, 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6, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28, 29, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 56, 58, 59, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 88, 89, 90, 91, 100, 101, 116, 128, 137, 138, 140, 144, 154, 161, 168, 169], "h_": [2, 18, 29, 54, 109, 146, 150, 161], "k": [2, 14, 15, 18, 20, 21, 30, 35, 40, 41, 43, 45, 49, 53, 56, 58, 64, 74, 78, 109, 110, 132, 136, 138, 148, 150, 156, 158, 160, 161, 162, 170], "max": [2, 9, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30, 33, 34, 35, 37, 39, 41, 43, 44, 45, 46, 47, 54, 61, 64, 67, 68, 71, 72, 73, 74, 75, 76, 78, 95, 102, 105, 108, 110, 112, 118, 122, 125, 137, 146, 169], "h_0": [2, 109, 155], "r_p": [2, 9, 125], "2k": [2, 53], "rp": [2, 29], "th": [2, 56, 58, 158], "radiu": [2, 5, 9, 12, 15, 16, 22, 23, 26, 29, 31, 34, 36, 39, 40, 44, 46, 48, 55, 56, 58, 59, 61, 62, 64, 67, 68, 70, 71, 72, 73, 77, 78, 101, 125, 132, 136, 137, 140, 148, 150, 169], "work": [2, 7, 9, 10, 15, 20, 21, 25, 29, 33, 34, 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31, 45, 47, 53, 60, 62, 67, 68, 70, 74, 76, 82, 83, 86, 87, 88, 90, 91, 99, 102, 107, 110, 112, 117, 119, 127, 137, 138, 148, 150, 158, 159, 169, 171], "gov": [2, 7], "vvuq": [2, 7], "main": [2, 7, 10, 15, 23, 55, 61, 70, 74, 81, 84, 97, 102, 122, 128, 137, 143, 158, 162, 168], "html": [2, 7, 43, 83], "02": [2, 13, 18, 21, 22, 25, 26, 29, 33, 49, 74, 75, 118, 168], "access": [2, 7, 15, 33, 43, 49, 84, 97, 112, 113, 167, 169, 170, 171, 172], "jun": [2, 28, 31, 35, 40, 46, 48, 138, 146], "8": [2, 3, 5, 6, 8, 10, 12, 14, 16, 19, 20, 21, 22, 24, 25, 26, 29, 30, 31, 33, 34, 36, 39, 41, 43, 44, 45, 46, 47, 48, 54, 56, 59, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 83, 101, 105, 115, 125, 137, 138, 148, 167, 169], "2023": [2, 7, 29, 30, 49, 55, 78, 81, 97, 109, 142, 148, 150, 167], "motion": [3, 5, 6, 12, 20, 22, 29, 35, 36, 41, 62, 67, 68, 93, 107, 119, 120, 125, 128, 137, 146, 150], "within": [3, 9, 16, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30, 31, 36, 41, 43, 45, 46, 49, 51, 53, 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77, 78, 93, 94, 102, 118, 120, 122, 137, 158, 169, 170], "rapid": [3, 56, 161], "veloc": [3, 5, 6, 7, 9, 11, 12, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 30, 31, 34, 35, 36, 37, 41, 43, 44, 48, 51, 53, 54, 59, 60, 61, 62, 64, 67, 68, 71, 72, 73, 75, 76, 77, 78, 88, 89, 90, 93, 94, 95, 97, 98, 100, 105, 106, 109, 110, 114, 119, 122, 125, 126, 128, 137, 138, 144, 146, 150, 156, 159, 161, 162, 168], "offset": [3, 5, 8, 9, 10, 12, 13, 14, 16, 72, 73, 74, 75, 76, 77, 78, 122, 137, 170], "so": [3, 15, 18, 21, 24, 26, 27, 28, 29, 30, 35, 46, 53, 56, 58, 61, 67, 68, 70, 72, 73, 74, 75, 76, 77, 78, 82, 83, 84, 86, 87, 91, 92, 107, 109, 111, 118, 122, 134, 143, 146, 148, 150, 155, 158, 168, 169, 170, 171, 172, 174], "exactli": [3, 23, 75, 76, 78, 90, 170, 172], "step": [3, 5, 8, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 58, 59, 61, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 81, 83, 84, 86, 97, 100, 102, 105, 106, 107, 108, 111, 112, 115, 118, 120, 122, 125, 126, 127, 128, 137, 138, 143, 146, 148, 150, 158, 161, 168, 169, 170, 171], "200": [3, 18, 25, 29, 30, 41, 47, 56, 72, 75, 102, 158, 169, 171], "4000": [3, 7, 13, 31], "point": [3, 5, 8, 9, 10, 12, 13, 14, 15, 16, 18, 19, 20, 22, 27, 28, 29, 37, 39, 40, 41, 44, 45, 46, 49, 55, 56, 58, 67, 68, 70, 72, 73, 74, 75, 76, 77, 78, 82, 91, 93, 101, 103, 107, 108, 111, 118, 119, 121, 122, 132, 135, 136, 137, 140, 146, 148, 156, 158, 169, 170, 171], "025": [3, 5, 12, 15, 30, 47, 59, 68, 72], "vector": [3, 10, 12, 14, 16, 18, 19, 21, 28, 29, 30, 31, 56, 64, 67, 68, 72, 73, 74, 75, 76, 77, 78, 90, 91, 93, 102, 103, 110, 118, 119, 121, 122, 123, 137, 146, 148, 150, 155, 156, 158, 159, 162, 170], "prn": [3, 5, 8, 9, 10, 12, 13, 14, 16, 72, 73, 74, 75, 76, 77, 78, 122, 123], "seed": [3, 5, 8, 9, 10, 12, 13, 14, 16, 55, 56, 58, 72, 73, 74, 75, 76, 77, 78, 122, 123, 136], "19": [3, 5, 8, 9, 12, 13, 14, 16, 49, 51, 72, 73, 74, 75, 76, 77, 78, 122, 148], "total": [3, 10, 14, 27, 29, 30, 31, 36, 37, 55, 56, 58, 61, 67, 68, 73, 75, 76, 99, 103, 105, 110, 112, 115, 119, 121, 123, 125, 128, 132, 133, 136, 148, 150], "8000": [3, 16, 74], "mm": [3, 10, 24, 28, 36, 76, 77, 78, 83, 143], "rel": [3, 5, 18, 19, 20, 21, 23, 25, 27, 28, 29, 30, 35, 43, 47, 49, 55, 62, 67, 68, 70, 72, 73, 75, 76, 77, 78, 83, 84, 102, 105, 114, 115, 133, 137, 143, 158, 159], "overlap": [3, 9, 15, 28, 102, 122, 137, 148], "suffici": [3, 14, 23, 26, 30, 46, 48, 49, 62, 67, 68, 106, 107, 108], "jump": [3, 9, 15, 125], "through": [3, 15, 21, 25, 27, 29, 30, 36, 37, 44, 49, 50, 53, 54, 55, 58, 59, 60, 61, 64, 73, 74, 76, 77, 81, 82, 85, 90, 100, 106, 107, 108, 118, 126, 133, 137, 138, 148, 150, 158, 169, 170], "01": [3, 5, 13, 18, 21, 22, 23, 24, 25, 26, 30, 34, 35, 37, 40, 41, 43, 45, 46, 47, 49, 51, 53, 54, 55, 58, 61, 73, 74, 99, 101, 109], "2560": [3, 5], "1e7": [3, 12, 74, 78], "roll": [3, 5, 7, 9, 10, 12, 13, 16, 72, 73, 74, 75, 76, 77, 78, 123, 125, 137, 150], "5e": [3, 5, 16, 35, 74], "log": [3, 5, 8, 9, 10, 12, 13, 14, 16, 22, 23, 28, 30, 31, 61, 72, 73, 74, 75, 76, 78, 83, 109, 112, 127, 169, 171], "1000": [3, 8, 9, 10, 12, 13, 14, 20, 21, 24, 26, 27, 33, 34, 37, 46, 54, 59, 60, 67, 68, 72, 73, 74, 75, 76, 102, 107, 110, 123, 125, 127, 137], "output": [3, 5, 8, 9, 10, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 59, 61, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 83, 84, 86, 87, 89, 99, 107, 108, 110, 111, 112, 115, 118, 126, 127, 128, 137, 138, 143, 168], "path": [3, 5, 9, 10, 12, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 55, 56, 58, 61, 72, 73, 74, 75, 76, 77, 78, 80, 83, 86, 101, 103, 111, 112, 127, 148, 168, 169, 170, 172], "true": [3, 5, 6, 8, 9, 10, 11, 12, 14, 15, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 51, 53, 54, 56, 58, 59, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 88, 89, 90, 91, 92, 93, 95, 97, 99, 100, 101, 102, 104, 106, 107, 108, 109, 110, 111, 112, 113, 114, 118, 127, 128, 129, 133, 134, 136, 137, 138, 140], "back": [3, 31, 56, 87, 150], "forth": [3, 30], "surfac": [3, 5, 6, 19, 21, 22, 26, 27, 28, 29, 31, 34, 35, 36, 39, 40, 44, 46, 47, 51, 56, 59, 61, 74, 100, 101, 104, 105, 106, 110, 120, 123, 128, 137, 144, 148, 156, 169], "translat": [3, 5, 6, 12, 61, 107, 119, 120, 122, 128, 137, 170], "along": [3, 10, 15, 19, 20, 23, 26, 27, 29, 33, 36, 37, 40, 46, 47, 53, 61, 64, 67, 68, 70, 71, 72, 78, 87, 103, 107, 108, 112, 119, 133, 137, 146, 158, 170, 172], "axi": [3, 10, 12, 15, 16, 19, 20, 21, 23, 29, 33, 53, 55, 58, 59, 64, 67, 68, 70, 71, 101, 103, 107, 119, 128, 132, 133, 135, 137, 170], "rotat": [3, 6, 22, 23, 29, 31, 59, 60, 61, 64, 90, 107, 119, 120, 122, 128, 137, 138, 168, 170, 172], "angular": [3, 5, 6, 7, 15, 22, 23, 28, 29, 31, 35, 59, 64, 117, 122, 128, 137, 138, 148, 150, 154], "fulli": [3, 18, 31, 74, 75, 76, 78, 90, 109, 137, 143, 167], "parametr": [3, 5, 9, 20, 109], "input": [3, 5, 16, 18, 19, 24, 61, 64, 68, 111, 122, 137, 171], "parser": [3, 170], "simplex": [3, 5, 6, 28, 29, 49, 50, 74, 98, 104, 106, 107, 128], "angl": [3, 5, 7, 10, 21, 24, 29, 56, 58, 64, 70, 72, 74, 91, 101, 128, 136, 137, 169, 170], "5708": 3, "pi": [3, 23, 28, 29, 30, 31, 34, 35, 39, 40, 44, 45, 47, 49, 59, 64, 89, 101, 113, 127, 137, 138, 140, 148, 169], "05": [3, 6, 7, 8, 9, 13, 16, 20, 23, 24, 25, 26, 27, 28, 30, 33, 34, 35, 44, 53, 54, 55, 59, 67, 70, 74, 75, 76, 77, 78, 102, 105, 109, 122, 138, 150], "035": [3, 78], "27": [3, 18, 28, 49, 148], "sin": [3, 23, 29, 30, 31, 34, 44, 47, 64, 72, 89, 113, 140], "1416": [3, 47], "31": [3, 70, 76], "42": [3, 70, 71, 168], "mpirun": [3, 5, 6, 8, 10, 12, 14, 16, 18, 21, 24, 25, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 54, 61, 72, 73, 74, 75, 76, 77, 78, 83, 143, 168], "np": [3, 5, 6, 8, 10, 12, 14, 15, 16, 18, 21, 24, 25, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 54, 61, 64, 72, 73, 74, 75, 76, 77, 78, 83, 168], "wherea": [3, 9, 20, 22, 28, 29, 47, 53, 80, 90, 98, 105, 109, 143], "granular": [3, 11, 16, 28, 74, 125, 126, 138, 167], "matter": [3, 31, 154, 167], "There": [3, 6, 9, 26, 27, 44, 82, 84, 93, 99, 102, 114, 119, 124, 125, 137, 150, 158, 167, 172], "much": [3, 18, 20, 21, 26, 29, 53, 56, 67, 68, 70, 71, 82, 86, 90, 99, 102, 107, 108, 137, 138, 160, 168, 169, 171], "sai": [3, 21, 114, 168], "entireti": [3, 18], "difficult": [3, 18, 26, 47, 51, 61, 105], "mighti": 3, "circumst": 3, "half": [3, 9, 12, 15, 16, 26, 29, 36, 54, 56, 59, 70, 73, 75, 78, 107, 123, 137, 148, 170], "clip": 3, "clearli": [3, 18, 19, 29, 72, 103, 167], "finer": [3, 22, 23, 26, 27, 29, 30, 31, 61, 68, 92, 107, 109, 169], "affect": [3, 15, 45, 49, 53, 56, 72, 82, 99, 101, 104, 109, 110, 113, 118, 137, 150, 158], "altern": [3, 20, 24, 31, 59, 87, 105, 109, 114, 137, 169, 172], "although": [3, 9, 20, 23, 29, 49, 61, 73, 83, 100, 159, 169], "believ": 3, "amaz": 3, "fan": [3, 169], "mustelida": 3, "otter": 3, "chinchillida": 3, "chinchilla": 3, "even": [3, 15, 18, 20, 22, 24, 29, 30, 31, 35, 49, 56, 82, 84, 87, 90, 100, 102, 105, 107, 108, 137, 148, 150, 154, 168, 171, 172], "viscacha": 3, "replac": [3, 19, 28, 58, 64, 82, 84, 103, 155, 158, 168], "favorit": 3, "send": [3, 168], "gmail": 3, "com": [3, 61, 82, 83, 86, 87, 97, 174], "organ": [4, 79, 137], "exampl": [4, 79, 81, 83, 84, 89, 90, 91, 92, 95, 96, 100, 105, 106, 108, 109, 112, 115, 119, 120, 122, 123, 124, 126, 128, 134, 135, 137, 138, 144, 146, 150, 158, 168, 169, 170, 171, 172, 174], "simplest": [4, 109, 143], "complic": 4, "dry": [5, 16, 109, 138], "materi": [5, 7, 28, 35, 40, 41, 44, 46, 48, 56, 58, 118, 137, 148, 167], "dimension": [5, 8, 9, 16, 21, 24, 39, 40, 41, 43, 46, 47, 48, 72, 73, 74, 75, 76, 77, 78, 94, 101, 120, 144, 158, 170], "load": [5, 8, 10, 11, 12, 14, 16, 18, 24, 51, 68, 75, 76, 78, 83, 86, 111, 122, 126, 137, 141, 142, 148, 162, 167, 168, 169, 171], "geometri": [5, 8, 9, 10, 12, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 33, 36, 37, 39, 40, 41, 43, 46, 48, 49, 55, 56, 58, 59, 61, 62, 64, 70, 71, 74, 75, 76, 77, 78, 100, 103, 104, 107, 124, 133, 137, 150], "squar": [5, 20, 21, 22, 34, 35, 37, 40, 46, 48, 54, 55, 73, 74, 75, 76, 77, 78, 80, 104, 109, 114, 169, 170], "40cm": 5, "powder": [5, 7, 14, 28, 40, 74, 78, 101, 138, 141, 148], "pack": [5, 6, 10, 12, 14, 15, 72, 74, 75, 76, 77, 78, 79, 138, 148, 150], "behind": [5, 19, 25, 37, 103, 109, 143, 148, 150], "sluic": 5, "gate": [5, 33], "rise": [5, 29, 47, 48, 52, 118, 146], "abl": [5, 9, 18, 20, 30, 33, 41, 58, 73, 105, 171], "freeli": 5, "produc": [5, 19, 22, 23, 59, 60, 70, 107, 137, 169], "those": [5, 7, 20, 21, 67, 68, 74, 84, 102, 104, 109, 137, 144, 146, 169, 171, 172], "evangelista": 5, "computation": [5, 9, 30, 31, 67, 68, 137], "effici": [5, 14, 29, 30, 31, 56, 58, 81, 82, 84, 90, 91, 102, 107, 132, 136, 158], "up": [5, 7, 9, 10, 14, 18, 20, 27, 28, 29, 30, 31, 38, 44, 61, 68, 73, 74, 75, 76, 78, 84, 87, 91, 97, 100, 102, 105, 106, 107, 115, 117, 168, 171], "sand": 5, "6mm": 5, "10mm": 5, "reduc": [5, 10, 21, 25, 27, 30, 41, 58, 68, 73, 74, 75, 84, 97, 99, 102, 103, 105, 108, 112, 126, 137, 158, 161], "factor": [5, 9, 10, 20, 22, 24, 30, 31, 33, 35, 39, 40, 45, 46, 48, 56, 58, 59, 61, 62, 64, 67, 68, 70, 71, 73, 74, 75, 78, 90, 100, 101, 103, 109, 112, 114, 118, 125, 137, 140, 144, 146, 169], "approxim": [5, 6, 12, 14, 16, 22, 30, 35, 41, 43, 54, 55, 56, 61, 70, 74, 75, 76, 77, 78, 103, 106, 109, 137, 138, 144, 146, 148, 150, 156, 158, 161], "250x": 5, "b1": 5, "length": [5, 12, 15, 16, 21, 24, 26, 27, 31, 34, 35, 36, 37, 40, 41, 43, 44, 46, 48, 54, 55, 56, 58, 59, 60, 61, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 93, 96, 100, 101, 104, 109, 123, 132, 137, 138, 140, 144, 150, 159, 161, 169, 170], "60cm": 5, "20cm": 5, "b3": 5, "times0": 5, "meter": [5, 36, 59, 60, 96, 107, 159], "made": [5, 7, 9, 20, 22, 23, 30, 31, 36, 45, 51, 53, 67, 70, 78, 96, 104, 112, 137, 143, 154, 159, 169, 170], "subdivided_hyper_rectangl": [5, 35, 37, 40, 44, 45, 46, 47, 49, 61, 62, 64, 67, 68, 70, 71, 72, 75, 92], "mono": [5, 16], "dispers": [5, 16, 116], "005": [5, 7, 8, 9, 18, 25, 40, 45, 48, 54, 72, 74, 76, 77, 133], "kg": [5, 12, 16, 28, 33, 59, 60, 67, 68, 74, 78], "respect": [5, 12, 14, 15, 16, 19, 21, 22, 23, 25, 26, 28, 31, 33, 34, 35, 37, 39, 40, 41, 43, 44, 46, 48, 54, 55, 56, 59, 64, 72, 76, 78, 90, 93, 99, 101, 103, 105, 109, 110, 118, 122, 125, 131, 137, 138, 146, 150, 156, 158, 159, 161], "60k": 5, "2m": 5, "match": [5, 21, 30, 31, 44, 90, 107, 170], "experi": [5, 7, 12, 14, 26, 27, 28, 29, 33, 37, 41, 55, 61, 67, 68, 84, 138], "import": [5, 7, 9, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 53, 58, 64, 67, 68, 73, 74, 75, 76, 78, 97, 105, 115, 133, 137, 140, 150, 158, 167, 168, 170], "final": [5, 9, 12, 18, 19, 20, 21, 22, 23, 26, 29, 30, 31, 36, 46, 48, 49, 56, 59, 61, 67, 68, 70, 72, 73, 74, 75, 76, 87, 90, 109, 118, 144, 148, 155, 158, 167, 168, 169, 170], "repos": 5, "well": [5, 9, 18, 20, 21, 22, 23, 25, 26, 27, 28, 30, 31, 36, 39, 40, 41, 51, 59, 61, 70, 73, 74, 75, 76, 77, 82, 84, 86, 87, 89, 109, 111, 137, 139, 142, 144, 146, 155, 158, 161, 167], "speed": [5, 7, 12, 15, 16, 24, 27, 28, 40, 61, 64, 68, 74, 75, 78, 83, 97, 105, 119, 158, 172], "progress": [5, 9, 18, 23, 26, 61, 73, 75, 76, 102, 108, 118, 169], "spheric": [5, 7, 9, 10, 14, 19, 33, 71, 75, 76, 77, 78, 103, 125, 137, 138, 141, 142, 146, 148], "choos": [5, 9, 12, 14, 16, 18, 26, 27, 31, 33, 34, 35, 39, 44, 45, 46, 48, 61, 67, 68, 72, 73, 74, 75, 76, 78, 82, 86, 102, 108, 122, 133, 138, 140, 148, 155, 158, 169, 170], "60000": 5, "1e6": [5, 6, 10, 18, 56, 58, 72, 73, 74, 112], "frequent": [5, 10, 12, 14, 16, 137, 150, 158], "divis": [5, 61, 112, 140, 169], "amongst": [5, 104, 125], "variou": [5, 7, 12, 18, 44, 49, 135, 143, 162, 169, 170], "core": [5, 6, 10, 12, 14, 15, 16, 30, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 54, 61, 74, 75, 76, 77, 78, 83, 86, 87, 102, 104, 125, 141, 143, 168, 170, 171], "detect": [5, 8, 9, 10, 12, 13, 14, 16, 36, 37, 55, 56, 58, 67, 72, 73, 74, 75, 76, 78, 134, 137, 138, 141, 142, 143], "search": [5, 8, 9, 10, 12, 13, 14, 16, 55, 68, 72, 74, 76, 77, 78, 111, 118, 124, 125, 133, 137, 172], "threshold": [5, 8, 9, 10, 12, 13, 14, 16, 21, 28, 29, 33, 34, 37, 41, 43, 45, 46, 54, 72, 73, 74, 75, 76, 77, 78, 97, 102, 105, 109, 118, 122, 125, 137, 146, 148, 158, 169], "hertz_mindlin_limit_overlap": [5, 7, 8, 9, 10, 12, 13, 14, 16, 73, 74, 75, 76, 78, 125], "resist": [5, 7, 9, 10, 13, 16, 72, 74, 125, 148], "torqu": [5, 7, 8, 9, 10, 13, 16, 19, 21, 22, 23, 25, 28, 29, 31, 59, 60, 71, 72, 74, 90, 94, 107, 110, 125, 138, 150], "constant_resist": [5, 9, 10, 13, 16, 72, 74, 125], "nonlinear": [5, 7, 8, 9, 10, 12, 13, 14, 16, 18, 23, 67, 68, 72, 73, 74, 75, 76, 78, 102, 108, 125, 137, 148, 161], "integr": [5, 7, 8, 9, 10, 12, 13, 14, 16, 24, 25, 29, 30, 31, 33, 34, 35, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 53, 54, 56, 59, 61, 62, 64, 67, 68, 72, 73, 74, 75, 76, 78, 110, 112, 137, 143, 144, 146, 155, 156, 162], "velocity_verlet": [5, 7, 8, 9, 10, 12, 13, 14, 16, 72, 73, 74, 75, 76, 78, 125], "insid": [5, 9, 10, 12, 13, 14, 15, 16, 21, 22, 29, 41, 43, 46, 55, 56, 58, 59, 61, 62, 64, 67, 68, 70, 71, 73, 75, 76, 77, 78, 80, 84, 87, 92, 102, 107, 109, 110, 122, 124, 132, 135, 136, 137, 150, 170], "60": [5, 16, 24, 31, 46, 71, 150, 167], "000": [5, 12, 26, 37, 43, 75, 77, 84], "note": [5, 6, 7, 8, 15, 16, 18, 20, 21, 22, 23, 26, 28, 30, 31, 33, 36, 41, 43, 44, 45, 49, 67, 74, 77, 78, 87, 95, 110, 119, 125, 128, 137, 148, 150, 154, 155, 162, 168, 171], "sure": [5, 16, 28, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 53, 54, 73, 75, 76, 83, 109, 168, 169, 170], 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107, 109, 118, 137, 138, 146, 158, 161, 167, 168, 169, 170, 174], "profil": [5, 14, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 36, 53, 61, 67, 71, 76, 78, 87, 90, 150, 169], "vari": [5, 7, 24, 40, 56, 58, 83, 89, 101, 109, 113, 118, 144, 150, 154, 155, 162, 168], "4m": 5, "approx": [5, 20, 23, 30, 33, 35, 39, 40, 41, 43, 44, 48, 56, 78, 148, 158], "025m": 5, "8m": 5, "observ": [5, 15, 18, 19, 21, 25, 26, 27, 28, 30, 31, 33, 34, 35, 41, 44, 54, 64, 77, 78], "magenta": 5, "curv": [5, 23, 27, 29, 31, 51, 56, 169, 170], "except": [5, 28, 29, 64, 67, 68, 72, 74, 76, 109, 118, 119, 125, 158], "fact": [5, 18, 23, 26, 27, 90, 158, 160], "few": [5, 20, 25, 28, 29, 30, 61, 67, 68, 87, 146, 170], "further": [5, 18, 19, 24, 26, 27, 33, 34, 53, 54, 56, 67, 68, 72, 73, 74, 75, 76, 102, 107, 112, 113, 137, 148, 150, 154, 155, 158, 169], "awai": [5, 19, 44, 56, 67, 68], "1m": [5, 26], "larger": [5, 29, 41, 43, 45, 48, 53, 56, 68, 70, 72, 77, 99, 105, 106, 107, 118, 122, 125, 146, 148, 150, 158], 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59, 60, 61, 64, 77, 141, 142, 144, 146, 167], "pitch": [6, 65, 107, 137], "blade": [6, 28, 65, 107], "impel": [6, 28, 61, 65, 107, 128, 169], "bidispers": 6, "insert": [6, 15, 16, 29, 61, 107, 120, 121, 123, 140, 150, 168, 170], "top": [6, 9, 10, 14, 18, 19, 20, 22, 27, 28, 33, 39, 40, 41, 43, 45, 53, 62, 64, 67, 68, 72, 73, 75, 76, 77, 103, 104, 112, 137, 169, 170], "visual": [6, 9, 18, 19, 20, 22, 23, 25, 26, 27, 28, 29, 30, 31, 45, 48, 51, 56, 58, 61, 64, 70, 71, 73, 74, 75, 78, 81, 107, 112, 126, 172, 173], "easier": [6, 84, 102, 109, 150, 158, 168, 169, 171], "rad": [6, 7, 12, 16, 23, 28, 31, 64, 70, 101, 122], "background": [6, 22, 61, 76, 77, 137, 169], "bodi": [6, 19, 22, 25, 97, 169], "subdivided_cylind": [6, 12, 29, 73, 78, 133], "055": 6, "0015": [6, 16, 68, 137], "23500": 6, "1500": [6, 75], "moment": [6, 9, 20, 59, 91, 93, 98, 102, 109, 118, 128, 133, 137, 148, 150, 158, 170], "triangular": [6, 128, 158, 169], "2d": [6, 9, 10, 18, 19, 20, 21, 22, 23, 24, 25, 30, 37, 44, 48, 49, 51, 62, 80, 84, 88, 89, 90, 101, 102, 103, 105, 107, 113, 116, 128, 131, 137, 139, 143, 159, 168, 169], "present": [6, 7, 9, 10, 15, 18, 19, 21, 25, 27, 29, 30, 31, 33, 34, 35, 37, 43, 44, 47, 48, 49, 54, 56, 61, 64, 70, 74, 78, 80, 93, 98, 101, 102, 122, 143, 146, 150, 154, 155, 161, 168, 170], "support": [6, 9, 19, 20, 23, 25, 26, 41, 71, 73, 82, 83, 86, 88, 90, 93, 102, 103, 108, 109, 117, 118, 119, 120, 125, 127, 128, 137, 146, 148, 150, 158, 160, 167], "quadrilater": [6, 18, 49, 170], "1d": [6, 49, 51, 107, 144, 169, 170], "specifi": [6, 7, 9, 10, 12, 13, 14, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 35, 36, 41, 44, 45, 46, 48, 49, 51, 55, 56, 58, 61, 67, 68, 72, 73, 74, 75, 76, 77, 78, 80, 82, 83, 86, 87, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 102, 103, 104, 105, 107, 108, 109, 111, 112, 114, 117, 118, 119, 121, 122, 123, 127, 128, 133, 140, 150, 158, 159, 168, 169, 170, 171, 172], "hour": [6, 10, 12, 14, 25, 30, 33, 40, 41, 47, 67, 74, 77, 78, 84, 87], 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"vy": 7, "vz": 7, "omega": [7, 22, 23, 28, 30, 31, 35, 53, 56, 58, 59, 64, 89, 100, 110, 118, 122, 137, 138, 144, 146, 148, 150, 154, 155, 156, 161, 162], "disabl": [7, 22, 31, 53, 72, 73, 74, 75, 76, 86, 95, 113, 115, 125, 134, 137, 138, 140], "slide": [7, 128, 148], "380e9": 7, "23": [7, 19, 83, 141, 142], "092": 7, "70e9": 7, "base": [7, 9, 10, 15, 16, 18, 21, 26, 27, 31, 39, 46, 48, 55, 56, 61, 62, 64, 67, 68, 72, 74, 75, 76, 78, 81, 97, 101, 107, 109, 123, 126, 137, 144, 146, 148, 158, 161, 167, 172], "law": [7, 22, 23, 34, 54, 71, 91, 101, 141, 142, 150, 155, 160], "perfectli": [7, 44, 53, 122, 168], "no_resist": [7, 125], "34": [7, 34, 54, 70], "run_oblique_impact_": 7, "suffix": [7, 99, 110, 126], "l": [7, 19, 20, 23, 24, 25, 28, 29, 34, 36, 40, 41, 48, 54, 56, 58, 72, 76, 84, 87, 89, 101, 109, 112, 125, 132, 136, 138, 141, 142, 144, 146, 150, 155, 156, 158, 159, 167, 169, 171], "run_oblique_impact": 7, "sleep": 7, "data": [7, 9, 10, 15, 18, 19, 20, 25, 27, 31, 33, 34, 35, 37, 41, 44, 46, 47, 49, 51, 54, 56, 58, 59, 73, 74, 81, 83, 102, 111, 134, 137, 172, 173], "veri": [7, 8, 9, 10, 14, 18, 20, 21, 22, 23, 26, 27, 30, 41, 47, 53, 56, 58, 61, 67, 78, 82, 83, 87, 90, 99, 102, 111, 114, 125, 143, 150, 158, 167, 169, 172], "predict": [7, 10, 26, 27, 40, 47, 61, 78, 101, 105, 141, 158], "600": [7, 14, 18, 37], "convinc": 7, "especi": [7, 18, 20, 25, 26, 27, 30, 31, 47, 71, 74, 83, 108, 122, 138, 140, 146, 150, 169], "superpos": [7, 35], "demonstr": [7, 22, 30, 31, 35, 47, 51, 67, 68, 72, 144], "equival": [7, 28, 53, 56, 61, 67, 90, 91, 104, 110, 137, 161], "disagr": [7, 23], "formul": [7, 29, 36, 59, 60, 80, 81, 114, 148, 150, 155, 157, 159, 163, 164, 167], "sept": 7, "h": [7, 18, 23, 24, 25, 27, 28, 29, 39, 40, 43, 45, 48, 53, 58, 67, 68, 74, 78, 91, 93, 100, 101, 109, 110, 118, 138, 143, 144, 146, 154, 155, 156, 158, 161, 162, 167], "technologi": [7, 74, 141, 148], "120": 7, "281": 7, "291": [7, 148], "2001": [7, 47], "version": [8, 24, 25, 31, 58, 61, 82, 86, 102, 123, 142, 148, 154, 158, 161, 171, 172], "packing_in_circl": 8, "circl": [8, 19, 21, 36, 46, 48, 56, 100, 103, 137, 169], "accur": [8, 19, 21, 26, 29, 30, 31, 33, 67, 105, 118, 122, 125, 137, 141, 142, 150], "phenomena": [8, 21, 22, 23, 35], "includ": [8, 9, 15, 18, 21, 27, 48, 61, 67, 68, 73, 75, 76, 77, 78, 79, 86, 87, 109, 110, 112, 117, 120, 123, 126, 132, 133, 135, 137, 138, 146, 150, 158, 162, 170, 172], "intrins": 8, "simpl": [8, 9, 15, 18, 19, 20, 22, 23, 26, 27, 28, 29, 30, 31, 35, 36, 41, 49, 56, 61, 63, 64, 67, 68, 72, 73, 74, 75, 76, 77, 78, 80, 86, 87, 108, 109, 137, 150, 168, 169, 172], "basic": [8, 9, 18, 24, 53, 59, 62, 64, 70, 80, 84, 87, 158, 167, 169], "analys": [8, 29, 49], "perform": [8, 12, 16, 19, 21, 25, 43, 45, 48, 55, 56, 64, 68, 74, 82, 83, 84, 87, 102, 112, 113, 122, 125, 137, 154, 158, 169, 171], "similar": [8, 15, 18, 20, 23, 37, 41, 44, 46, 56, 59, 60, 62, 64, 78, 83, 84, 103, 122, 137, 150, 158, 168, 169], "explain": [8, 9, 10, 11, 12, 15, 16, 19, 23, 24, 25, 27, 28, 29, 30, 33, 34, 39, 40, 46, 54, 56, 58, 62, 67, 68, 72, 73, 75, 76, 78, 82, 93, 105, 128, 131, 134, 143, 158, 172], "part": [8, 9, 10, 15, 18, 20, 21, 23, 26, 27, 29, 30, 31, 35, 37, 44, 55, 60, 61, 67, 68, 70, 74, 77, 84, 103, 106, 137, 141, 142, 144, 148, 156, 162, 167, 169, 170, 171], "becaus": [8, 12, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 39, 49, 56, 59, 61, 62, 67, 68, 71, 74, 78, 97, 102, 103, 108, 118, 125, 144, 146, 156, 158, 160], "hyper_bal": [8, 9, 22, 107], "hollow": [8, 137], "compon": [8, 15, 19, 20, 23, 28, 30, 31, 36, 61, 64, 67, 68, 90, 100, 102, 108, 109, 113, 117, 121, 122, 128, 137, 138, 143, 156, 158, 167], "expand": [8, 9, 10, 12, 16, 72, 74, 76, 77, 78, 124], "concav": [8, 9, 12, 16, 77, 124, 137, 170], "enabl": [8, 11, 12, 14, 16, 19, 20, 22, 23, 25, 27, 28, 29, 31, 33, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 53, 54, 58, 59, 61, 64, 68, 72, 73, 74, 75, 76, 77, 78, 86, 87, 88, 89, 95, 97, 98, 99, 100, 101, 102, 105, 106, 107, 108, 109, 110, 112, 113, 116, 117, 118, 124, 125, 126, 133, 134, 136, 137, 138, 146], "face": [8, 12, 14, 16, 20, 26, 36, 55, 56, 58, 73, 75, 78, 124, 132, 135, 170], "neighbor": [8, 9, 12, 16, 61, 124, 150, 170], "minimum": [8, 9, 10, 18, 21, 25, 27, 28, 29, 30, 33, 53, 56, 58, 67, 68, 72, 73, 75, 76, 78, 95, 102, 105, 109, 110, 118, 125, 140, 158, 169], "150000": [8, 12], "03": [8, 22, 34, 41, 49, 70, 72, 109, 122], "07": [8, 9, 12, 22, 23, 33, 74, 122, 144], "gravit": [8, 9, 33, 35, 37, 41, 43, 45, 46, 47, 48, 73, 75, 76, 123, 150], "5000": [8, 51, 72, 73, 75, 78], "2000": [8, 9, 16, 30, 47, 72, 75, 76, 77, 102, 110, 146, 150], "10000000": [8, 76, 77], "neighborhood": [8, 9, 10, 12, 13, 14, 16, 72, 73, 74, 75, 76, 78, 125], "1e": [8, 9, 10, 12, 13, 18, 20, 21, 24, 25, 26, 27, 28, 29, 30, 35, 43, 45, 56, 58, 61, 67, 68, 72, 73, 74, 75, 76, 78, 95, 102, 108, 109, 112, 118, 125, 127, 132, 137, 158], "faster": [8, 15, 67, 68, 78, 97, 102], "howev": [8, 18, 19, 21, 22, 23, 26, 27, 28, 29, 33, 35, 43, 44, 45, 47, 49, 51, 53, 64, 68, 72, 73, 74, 75, 76, 84, 97, 101, 102, 108, 109, 112, 114, 118, 133, 137, 144, 146, 150, 158, 159, 161, 167, 169, 170, 171, 174], "leverag": [8, 20, 29], "strategi": [8, 18, 19, 20, 27, 37, 41, 74, 100, 102, 105, 108, 114, 141, 142, 158, 167], "introduc": [9, 19, 20, 22, 23, 26, 53, 59, 61, 68, 72, 73, 74, 75, 76, 77, 78, 90, 137, 139, 140, 144, 156, 160], "strongli": [9, 59, 72, 73, 75, 76, 77, 78, 90, 168], "50": [9, 12, 15, 21, 24, 26, 34, 35, 39, 43, 45, 46, 47, 54, 61, 71, 76, 77, 78, 87, 90, 125, 170], "peripheri": [9, 29], "possess": [9, 20, 23, 109, 114], "default": [9, 10, 15, 19, 20, 22, 23, 26, 28, 33, 44, 45, 48, 49, 53, 59, 62, 67, 68, 71, 74, 83, 89, 90, 91, 93, 95, 96, 97, 99, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 116, 118, 119, 122, 125, 126, 131, 132, 133, 134, 136, 137, 138, 140, 158, 159, 169, 170], "format": [9, 18, 19, 20, 22, 23, 28, 30, 31, 40, 51, 56, 76, 80, 112, 129, 131, 141, 143, 168, 169, 174], "parameterhandl": [9, 20], "class": [9, 19, 20, 104, 120, 143, 158], "librari": [9, 20, 61, 64, 67, 68, 73, 81, 83, 84, 86, 108, 167, 172], "deriv": [9, 20, 30, 67, 68, 72, 75, 76, 77, 78, 109, 125, 138, 144, 155, 162], "portion": [9, 20, 72, 73, 75, 76, 78, 137], "flexibl": [9, 20, 72, 90, 137], "belong": [9, 20, 43, 72, 102, 110, 150, 155, 171], "establish": [9, 20, 22, 23, 26, 27, 29, 30, 31, 36, 47, 49, 51, 61, 100, 106, 131, 167], "situ": [9, 20], "gridgener": [9, 19, 20, 22, 23, 24, 29, 30, 31, 49, 72, 73, 75, 78, 104], "explan": [9, 20, 22, 27, 29, 34, 37, 45, 46, 54, 72, 74, 75, 76, 78, 90, 137, 158, 172], "grid_typ": [9, 20], "whether": [9, 41, 48, 99, 102, 108, 118, 137, 138, 140, 158], "color": [9, 15, 20, 22, 23, 30, 33, 49, 67, 68, 77, 87, 100, 104, 124, 150, 169], "option": [9, 14, 15, 19, 20, 22, 28, 31, 49, 67, 68, 72, 73, 74, 75, 76, 78, 82, 86, 87, 97, 98, 99, 102, 106, 107, 108, 109, 112, 115, 117, 118, 122, 126, 131, 132, 133, 134, 136, 140, 150, 169, 170, 172], "go": [9, 15, 19, 21, 28, 58, 72, 76, 78, 84, 87, 101, 104, 109, 131, 133, 144, 170], "By": [9, 15, 18, 20, 22, 23, 26, 28, 30, 31, 35, 36, 43, 45, 49, 56, 67, 68, 71, 74, 90, 91, 93, 96, 104, 109, 117, 118, 126, 137, 138, 140, 150, 154, 158, 159, 169, 170], "latter": [9, 29, 48, 61, 93, 109, 158], "receiv": [9, 15, 55, 101, 119], "uniqu": [9, 20, 144, 158], "id": [9, 10, 12, 15, 16, 18, 19, 20, 21, 22, 23, 27, 28, 29, 30, 31, 34, 35, 36, 40, 41, 44, 45, 46, 48, 49, 53, 54, 56, 59, 61, 62, 64, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 83, 84, 90, 91, 95, 97, 99, 103, 104, 107, 109, 110, 112, 118, 119, 129, 137, 169, 170], "constitut": [9, 30, 77, 154, 170], "advanc": [9, 20, 31, 56, 87, 106, 107, 112, 114, 171], "necessari": [9, 10, 14, 15, 18, 20, 22, 27, 28, 29, 55, 56, 58, 59, 61, 62, 67, 73, 80, 90, 100, 105, 109, 112, 115, 137, 155, 158, 161, 169], "curvatur": [9, 21, 23, 27, 46, 48, 56, 118, 137], "instead": [9, 10, 15, 21, 22, 28, 36, 41, 43, 51, 64, 67, 82, 86, 87, 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110, 114, 115, 118, 119, 122, 123, 125, 129, 144, 155, 158, 159, 161], "monodispers": [9, 12, 123], "standard": [9, 18, 27, 28, 29, 74, 82, 110, 112, 123, 143, 146, 159], "deviat": [9, 26, 45, 74, 110, 118, 123], "subsequ": [9, 22, 23, 27, 71, 111, 158, 170], "travel": [9, 56, 58], "long": [9, 12, 14, 18, 21, 22, 23, 27, 28, 30, 41, 43, 49, 51, 61, 67, 68, 70, 73, 74, 75, 76, 78, 104, 125, 170], "late": [9, 125], "popcorn": [9, 125], "rebuild": [9, 125], "store": [9, 15, 23, 73, 75, 76, 78, 87, 90, 110, 122, 125, 137, 143, 174], "displac": [9, 49, 125], "exce": [9, 125, 140, 158], "smallest": [9, 67, 68, 125, 137], "criterion": [9, 30, 31, 51, 58, 105, 125, 148], "rebuilt": [9, 125], "region": [9, 14, 20, 26, 27, 36, 78, 92, 100, 107, 109, 125, 137, 144, 160, 161, 170], "phi": [9, 24, 34, 35, 47, 54, 56, 58, 91, 93, 95, 100, 109, 110, 118, 125, 144, 146, 162], "min": [9, 19, 21, 22, 25, 26, 29, 30, 33, 34, 35, 37, 39, 41, 44, 45, 46, 47, 48, 54, 61, 64, 67, 68, 71, 90, 95, 102, 105, 109, 110, 125, 137, 146, 169], "d_c": [9, 125], "epsilon": [9, 31, 91, 93, 101, 110, 122, 125], "alpha": [9, 20, 21, 27, 39, 40, 48, 49, 56, 58, 71, 74, 97, 100, 101, 108, 118, 125, 137, 144, 146, 158], "denot": [9, 21, 39, 40, 41, 43, 101, 109, 122, 125, 127, 144, 146], "polydispers": [9, 123, 125], "safeti": [9, 125], "happen": [9, 19, 29, 33, 91, 102, 107, 125, 137, 146], "rather": [9, 26, 34, 46, 84, 125], "put": [9, 20, 28, 73, 75, 76, 102, 105], "addition": [9, 15, 25, 33, 41, 43, 73, 75, 76, 78, 118, 150], "termin": [9, 19, 20, 29, 31, 35, 58, 68, 73, 75, 76, 80, 83, 84, 87, 99, 107, 108, 109, 110, 112, 134, 136, 137, 170, 171, 172], "easi": [9, 49, 51, 61, 73, 75, 76, 159, 169], "monitor": [9, 20, 23, 29, 30, 31, 45, 48, 61, 73, 75, 76, 102, 108, 115, 118, 158], "bear": [9, 19, 20, 22, 23, 26, 49, 73, 74, 75, 78, 99, 143], "pvd": [9, 15, 18, 19, 20, 22, 23, 26, 28, 29, 51, 73, 74, 75, 78, 80, 107, 112, 115, 126, 137], "read": [9, 12, 15, 19, 20, 21, 22, 23, 26, 27, 56, 70, 72, 73, 74, 75, 76, 78, 87, 103, 104, 109, 115, 124, 132, 137, 140, 144, 146, 170, 172], "popular": [9, 20, 21, 22, 26, 27, 73, 74, 75, 78, 150], "program": [9, 19, 20, 22, 23, 26, 27, 55, 73, 74, 75, 78, 84], "vtu": [9, 18, 20, 27, 29, 46, 59, 61, 64, 67, 73, 112, 115, 122, 126, 137, 171], "compress": [9, 20, 33, 52, 54, 73, 83, 97, 109, 118, 169], "archiv": [9, 20, 73], "cannot": [9, 18, 19, 20, 29, 41, 59, 64, 67, 68, 73, 87, 101, 105, 109, 160, 170], "postprocess": [9, 18, 20, 21, 22, 23, 25, 30, 31, 33, 34, 35, 36, 37, 41, 44, 45, 46, 47, 48, 49, 54, 56, 58, 73, 78, 110, 112, 172], "directli": [9, 19, 20, 28, 30, 47, 64, 67, 68, 73, 80, 82, 84, 86, 87, 108, 122, 137, 150, 159, 168, 169, 170, 172], "easili": [9, 15, 20, 23, 24, 26, 29, 51, 73, 100, 169, 170], "sometim": [9, 20, 73, 84, 140, 171], "raw": [9, 18, 20, 73, 169, 172], "discharg": [10, 14, 121], "anand": 10, "depth": [10, 36, 39, 40, 49, 78, 80, 101, 109, 141], "thin": [10, 21, 71, 109, 141, 142], "width": [10, 26, 29, 53, 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68, 78, 138, 148], "cm\u00b3": 10, "94": [10, 22, 56, 58, 134, 138], "2500": [10, 12, 16, 24, 73], "09": [10, 12, 14, 18, 27, 78], "silo": 10, "balac": 10, "50000": 10, "rayleigh": [10, 38, 52, 74, 122, 127], "nx": [10, 14, 73, 74, 75, 76, 77, 78, 121], "ny": [10, 14, 73, 74, 75, 76, 77, 78, 121], "nz": [10, 14, 73, 74, 75, 76, 77, 78, 121], "hopper_post_process": 10, "rate": [10, 20, 23, 27, 34, 54, 56, 61, 71, 78, 97, 109, 110, 112, 158, 160], "mass": [10, 15, 25, 29, 36, 44, 45, 61, 72, 73, 75, 76, 96, 109, 110, 113, 114, 137, 138, 146, 148, 150, 159], "hooper": 10, "84": 10, "now": [10, 15, 20, 22, 26, 28, 31, 41, 53, 58, 64, 70, 72, 73, 75, 76, 78, 82, 84, 87, 109, 137, 146, 148, 155, 160, 161, 168, 169, 170, 171], "origin": [10, 15, 35, 37, 46, 61, 81, 93, 104, 107, 135, 137, 140, 157, 158, 164, 167, 170], "did": [10, 18, 74], "modif": [10, 15, 21, 67, 68, 86, 169, 170], "previou": [10, 14, 15, 18, 22, 24, 25, 26, 27, 28, 29, 44, 48, 51, 55, 56, 58, 59, 67, 70, 72, 73, 74, 75, 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138, 146, 148, 150, 167], "sci": [10, 37, 45, 138, 148, 150, 167], "63": [10, 138], "5821": 10, "5830": 10, "dec": [10, 20, 30, 33, 138], "2008": [10, 18, 27], "ce": [10, 138, 150, 167], "08": [10, 22, 35, 44, 68, 101, 102, 108, 137], "015": [10, 76], "mini": 11, "lagrangian": [11, 28, 94, 117, 120, 139, 161], "ident": [11, 18, 41, 45, 49, 64, 72, 73, 74, 75, 76, 78, 83, 90, 109, 124, 127, 170], "temperatur": [11, 34, 36, 39, 40, 41, 43, 49, 53, 54, 74, 89, 91, 95, 96, 98, 100, 101, 105, 107, 109, 118, 125, 126, 159, 162], "variabl": [11, 15, 18, 19, 21, 22, 23, 24, 25, 26, 28, 29, 31, 33, 34, 35, 36, 37, 39, 44, 45, 46, 47, 54, 56, 58, 64, 67, 68, 71, 80, 82, 86, 87, 89, 91, 98, 104, 105, 113, 132, 136, 137, 144, 159, 168, 169], "built": [11, 15, 24, 26, 29, 51, 82, 84, 87, 126, 161], "capabl": [11, 22, 30, 36, 51, 61, 67, 68, 126, 150], "alizadeh": 12, "226080": 12, "cylindr": [12, 15, 16, 19, 23, 28, 31, 55, 58, 74, 75, 76, 77, 78, 103, 132, 133, 135, 136, 137], "appli": [12, 15, 16, 18, 19, 20, 22, 23, 26, 28, 29, 30, 31, 33, 36, 37, 41, 43, 45, 46, 51, 59, 61, 62, 71, 74, 77, 78, 90, 95, 97, 101, 102, 103, 104, 107, 108, 109, 110, 114, 117, 118, 119, 121, 122, 125, 128, 137, 138, 141, 146, 148, 150, 154, 156, 158, 162, 167, 168, 169, 170], "36": [12, 26, 70], "18": [12, 34, 54, 71, 82, 87, 109, 138], "38000": 12, "175": 12, "575": [12, 146], "003": [12, 16, 18, 25, 39], "m3": [12, 16], "97": [12, 16, 22, 72, 76, 77, 82, 86, 87, 148, 167], "35": [12, 16, 35, 37, 44, 70, 74, 78, 84], "updat": [12, 22, 28, 44, 67, 68, 74, 81, 82, 93, 97, 125, 137, 146, 148, 169, 173], "subdomain": [12, 14, 125, 126], "achiev": [12, 18, 19, 29, 30, 67, 68, 74, 80, 90, 102, 105, 125, 143, 144, 158, 170], "repartit": 12, "20000": [12, 14, 16, 20, 78, 122], "exert": [12, 119, 150], "imaginari": [12, 119, 124], "side": [12, 21, 27, 33, 34, 36, 46, 48, 51, 54, 56, 61, 67, 68, 70, 74, 75, 77, 90, 102, 115, 122, 137, 150, 158, 170], "11": [12, 18, 19, 21, 27, 28, 46, 49, 51, 67, 68, 70, 71, 73, 75, 78, 82, 86, 87, 102, 115, 138, 141, 148, 167, 171], "around": [12, 22, 29, 30, 53, 56, 59, 61, 64, 65, 67, 68, 71, 73, 74, 75, 78, 107, 118, 119, 125, 133, 137, 140, 141, 142, 146, 150, 168, 169], "cost": [12, 18, 21, 25, 27, 29, 53, 55, 58, 68, 102, 107, 108, 115, 118, 125, 133, 134, 144, 150, 158], "o": [12, 19, 21, 23, 28, 30, 36, 74, 78, 82, 84, 85, 111, 141, 148, 168, 169, 172], "dub\u00e9": 12, "bertrand": [12, 19, 25, 28, 148, 167], "chaouki": [12, 55, 56, 58, 134, 141, 142, 148, 167], "character": [12, 36, 109], "aich": [12, 138, 150], "59": [12, 53], "1894": 12, "1905": 12, "2013": [12, 21, 30, 138, 150, 167], "1002": [12, 20, 29, 30, 46, 47, 48, 138, 146, 148, 150, 158, 167], "aic": [12, 138, 150], "13982": 12, "whole": [13, 18, 21, 28, 53, 61, 78, 83, 97, 102, 169], "04": [13, 15, 16, 22, 23, 27, 56, 74, 75, 86, 87], "cubic": [13, 67, 68, 71], "2000000": [13, 61], "019": [13, 19, 25], "001": [13, 20, 21, 29, 33, 34, 39, 40, 44, 45, 46, 47, 51, 68, 73, 74, 75, 77, 78, 96, 123], "wedg": 14, "golshan": [14, 81, 141, 142, 148, 167], "checkpoint": [14, 16, 72, 73, 74, 75, 76, 78, 111, 140], "40": [14, 15, 21, 22, 28, 35, 44, 47, 61, 70, 71, 74, 75, 83, 150], "stopper": [14, 73, 75, 76, 128], "hopper": [14, 125, 126], "remov": [14, 37, 70, 84, 87, 121, 122, 138, 169], "contrari": [14, 18, 87], "share": [14, 30, 31, 35, 83, 104, 122, 171], "Such": [14, 56], "unstructur": 14, "detriment": 14, "stabil": [14, 20, 27, 29, 30, 35, 41, 43, 44, 47, 49, 53, 68, 72, 73, 74, 75, 76, 77, 94, 97, 109, 118, 137, 138, 141, 142, 157, 163, 164, 167], "stabl": [14, 18, 20, 23, 24, 25, 35, 53, 74, 77, 82, 86, 105, 114, 138, 143, 144, 161, 169], "vicin": [14, 18, 37, 104, 169], "37": [14, 18, 22, 24, 70], "042": [14, 74], "007": [14, 74, 148], "132300": 14, "005833": 14, "2e": 14, "break": [14, 30, 31, 34, 44, 46, 52, 54, 106, 118], "continu": [14, 25, 29, 44, 53, 55, 56, 61, 70, 72, 76, 81, 83, 87, 102, 107, 118, 141, 142, 144, 146, 150], "written": [14, 16, 25, 30, 31, 43, 45, 46, 51, 55, 56, 58, 73, 75, 76, 78, 83, 87, 99, 107, 111, 112, 126, 150, 159, 167, 169, 172], "filenam": [14, 48, 72, 73, 74, 75, 76, 78, 89, 110, 111, 132, 133, 134, 136, 169], "100000": [14, 16, 26, 56, 77, 125, 136], "temporari": [14, 121, 143], "hold": [14, 28, 100, 121, 155, 170], "xy": [14, 26, 71], "esgandari": 14, "zarghami": [14, 167], "saleh": 14, "resid": 14, "technol": [14, 28, 40, 78, 101, 138], "373": 14, "510": [14, 150], "521": 14, "aug": [14, 41, 49, 78, 109, 138, 150, 167], "powtec": [14, 28, 40, 74, 78, 138], "06": [14, 22, 23, 34, 43, 54, 55, 58, 70, 75, 121], "093": 14, "example_small_rotating_drum": 15, "radial": [15, 23, 29, 31, 36, 39, 40, 61, 74, 101, 137], "nnm": 15, "pleas": [15, 23, 28, 72, 76, 77, 142, 148, 170], "case_path": [15, 168], "prm_file_nam": 15, "pvd_name": 15, "n_proc": [15, 30, 31], "none": [15, 18, 29, 44, 53, 67, 90, 91, 103, 104, 105, 115, 117, 118, 125, 128, 133, 169], "constructor": [15, 21], "current": [15, 28, 30, 33, 35, 36, 45, 46, 48, 51, 56, 58, 61, 68, 73, 82, 84, 86, 88, 95, 102, 106, 108, 109, 117, 119, 128, 137, 138, 140, 146, 150, 154, 155, 168, 170, 174], "stand": [15, 35, 100], "interv": [15, 29, 49, 109, 110, 112, 146], "special": [15, 59, 67, 68, 169, 170, 171], "control": [15, 19, 70, 90, 94, 99, 100, 101, 102, 105, 106, 107, 108, 109, 110, 111, 114, 115, 118, 120, 125, 126, 131, 137, 138, 139, 143, 158, 169, 170, 171], "routin": [15, 81], "cpu": [15, 18, 24, 25, 29, 34, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 48, 53, 54, 61, 168], "time_list": 15, "return": [15, 28, 64, 87, 122], "situat": [15, 30, 37, 40, 46, 150, 170, 174], "everytim": 15, "dataset": [15, 18], "togeth": [15, 82, 86, 112], "dictionari": [15, 55], "prm_dict": 15, "name_of_the_paramet": 15, "occurr": [15, 23], "pvtu": [15, 115], "empti": [15, 122], "anoth": [15, 19, 23, 26, 27, 30, 36, 51, 53, 58, 68, 70, 73, 75, 76, 137, 143, 158, 167, 168, 172], "mod_": 15, "read_lethe_to_pyvista": 15, "assign": [15, 18, 59, 61, 90, 125, 137, 171], "step_numb": 15, "previous": [15, 37, 72, 77, 122, 123, 133, 144, 146, 170], "resolut": [15, 21, 29, 31, 35, 41, 48, 53, 67, 68, 126, 137, 138, 146], "hand": [15, 51, 61, 84, 102, 115, 150, 158, 169, 172], "reran": 15, "modify_arrai": 15, "reference_array_nam": 15, "identifi": [15, 19, 20, 29, 36, 56, 108, 143, 158, 169], "array_nam": 15, "rewritten": [15, 148], "new_arrai": 15, "restart_arrai": 15, "standard_valu": 15, "entir": [15, 36, 67, 74, 76, 87, 98, 105, 110, 119, 121, 143, 150, 161], "intact": 15, "string": [15, 172], "combin": [15, 29, 35, 41, 55, 56, 70, 90, 122, 143, 148, 154, 169], "array_valu": 15, "repeat": [15, 25, 27, 48, 70, 105, 118, 170], "numpi": [15, 64, 168, 172], "len": 15, "restart": [15, 16, 84, 86, 87, 94, 102, 106, 122, 158], "plug": [15, 74], "time_depend": 15, "reference_time_step": 15, "replic": 15, "modificait": 15, "simpli": [15, 21, 27, 28, 35, 37, 46, 70, 86, 87, 148, 169, 172], "particle_color": 15, "40th": 15, "place": [15, 19, 21, 28, 70, 72, 74, 77, 131, 137, 168], "sqrt": [15, 23, 31, 35, 44, 45, 49, 64, 74, 101, 107, 127, 138, 144, 148], "assess": [15, 35, 41, 53, 55, 74], "again": [15, 21, 26, 39, 72, 74, 78, 87, 158, 161, 170], "guarante": [15, 49, 59, 64, 122, 137, 170], "intead": 15, "One": [15, 21, 23, 29, 66, 137, 151, 155, 158, 167, 172], "plotter": 15, "pv": 15, "theta_resolut": 15, "phi_resolut": 15, "particle_glyph": 15, "get_df": 15, "glyph": [15, 170], "geom": 15, "add_mesh": 15, "scalar": [15, 144, 146], "iteract": 15, "window": [15, 35, 81, 83, 84, 85, 101, 169, 170], "loop": [15, 137, 169], "save": [15, 18, 24, 28, 29, 35, 51, 56, 72, 87, 107, 111, 112, 133, 169, 170], "applic": [15, 19, 24, 25, 26, 29, 44, 45, 47, 58, 72, 73, 75, 76, 77, 78, 80, 81, 83, 87, 102, 107, 108, 109, 113, 131, 133, 137, 139, 141, 142, 148, 150, 158, 167, 169], "split": [15, 71, 112, 158, 168, 169, 170], "get_cylindrical_coord": 15, "radial_compon": 15, "yz": 15, "points_cyl": 15, "theta": [15, 23, 29, 31, 56, 58, 64, 72, 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"Results for H=40 \\ \\text{cm}": [[5, "results-for-h-40-text-cm"]], "Granular Mixer": [[6, "granular-mixer"]], "Solid Objects": [[6, "solid-objects"], [74, "solid-objects"], [128, "solid-objects"]], "Possibility for Extension": [[6, "possibility-for-extension"], [28, "possibility-for-extension"], [39, "possibility-for-extension"]], "Oblique Wall Impact": [[7, "oblique-wall-impact"]], "Model parameters": [[7, "model-parameters"]], "Generating the parameter files": [[7, "generating-the-parameter-files"]], "Packing in Ball": [[8, "packing-in-ball"]], "Packing in Circle": [[9, "packing-in-circle"]], "Rectangular Hopper": [[10, "rectangular-hopper"]], "Floating Walls": [[10, "floating-walls"], [14, "floating-walls"], [73, "floating-walls"], [74, "floating-walls"], [75, "floating-walls"], [76, "floating-walls"], [77, "floating-walls"], [78, "floating-walls"]], "Post-processing": [[10, "post-processing"], [11, "post-processing"], [27, "post-processing"], [29, "post-processing"], [30, "post-processing"], [31, "post-processing"], [36, "post-processing"], [45, "post-processing"], [74, "post-processing"], [110, "post-processing"], [126, "post-processing"]], "Results Post-processing": [[10, "results-post-processing"]], "Case with Periodic Boundary Conditions": [[10, "case-with-periodic-boundary-conditions"]], "Boundary Conditions": [[10, "boundary-conditions"], [18, "boundary-conditions"], [19, "boundary-conditions"], [20, "boundary-conditions"], [21, "boundary-conditions"], [22, "boundary-conditions"], [23, "boundary-conditions"], [26, "boundary-conditions"], [27, "boundary-conditions"], [28, "boundary-conditions"], [29, "boundary-conditions"], [30, "boundary-conditions"], [31, "boundary-conditions"], [34, "boundary-conditions"], [36, "boundary-conditions"], [39, "boundary-conditions"], [40, "boundary-conditions"], [44, "boundary-conditions"], [45, "boundary-conditions"], [49, "boundary-conditions"], [51, "boundary-conditions"], [53, "boundary-conditions"], [54, "boundary-conditions"], [59, "boundary-conditions"], [61, "boundary-conditions"], [62, "boundary-conditions"], [64, "boundary-conditions"], [67, "boundary-conditions"], [68, "boundary-conditions"], [71, "boundary-conditions"], [72, "boundary-conditions"], [73, "boundary-conditions"], [74, "boundary-conditions"], [75, "boundary-conditions"], [76, "boundary-conditions"], [77, "boundary-conditions"], [78, "boundary-conditions"], [119, "boundary-conditions"]], "Results Comparison": [[10, "results-comparison"]], "Rotating Drum with Postprocessing": [[11, "rotating-drum-with-postprocessing"]], "Rotating Drum": [[12, "rotating-drum"]], "DEM Boundary Conditions": [[12, "dem-boundary-conditions"], [16, "dem-boundary-conditions"]], "Rotation of Box": [[13, "rotation-of-box"]], "Silo": [[14, "silo"]], "Restart": [[14, "restart"], [72, "restart"], [73, "restart"], [74, "restart"], [74, "id7"], [75, "restart"], [76, "restart"], [78, "restart"], [111, "restart"]], "Small Scale Rotating Drum Postprocessing": [[15, "small-scale-rotating-drum-postprocessing"]], "Python Code": [[15, "python-code"]], "Constructing the Object": [[15, "constructing-the-object"]], "Creation of a New Array": [[15, "creation-of-a-new-array"]], "Visualizing the Results": [[15, "visualizing-the-results"]], "PyVista Visualization": [[15, "pyvista-visualization"]], "ParaView Visualization": [[15, "paraview-visualization"]], "Mixing Index": [[15, "mixing-index"]], "Nearest Neighbors Method": [[15, "nearest-neighbors-method"]], "Doucet Mixing Index": [[15, "doucet-mixing-index"]], "Small Scale Rotating Drum": [[16, "small-scale-rotating-drum"]], "Packing information": [[16, "packing-information"]], "Flow past a Backward-Facing Step": [[18, "flow-past-a-backward-facing-step"]], "Physical Properties": [[18, "physical-properties"], [20, "physical-properties"], [21, "physical-properties"], [22, "physical-properties"], [23, "physical-properties"], [25, "physical-properties"], [26, "physical-properties"], [27, "physical-properties"], [28, "physical-properties"], [29, "physical-properties"], [30, "physical-properties"], [31, "physical-properties"], [33, "physical-properties"], [34, "physical-properties"], [35, "physical-properties"], [36, "physical-properties"], [37, "physical-properties"], [40, "physical-properties"], [41, "physical-properties"], [43, "physical-properties"], [44, "physical-properties"], [45, "physical-properties"], [46, "physical-properties"], [47, "physical-properties"], [48, "physical-properties"], [49, "physical-properties"], [51, "physical-properties"], [53, "physical-properties"], [54, "physical-properties"], [61, "physical-properties"], [67, "physical-properties"], [68, "physical-properties"], [71, "physical-properties"], [72, "physical-properties"], [73, "physical-properties"], [74, "physical-properties"], [75, "physical-properties"], [76, "physical-properties"], [78, "physical-properties"], [109, "physical-properties"]], "Mesh Adaptation": [[18, "mesh-adaptation"], [19, "mesh-adaptation"], [21, "mesh-adaptation"], [23, "mesh-adaptation"], [25, "mesh-adaptation"], [26, "mesh-adaptation"], [29, "mesh-adaptation"], [33, "mesh-adaptation"], [34, "mesh-adaptation"], [35, "mesh-adaptation"], [39, "mesh-adaptation"], [44, "mesh-adaptation"], [45, "mesh-adaptation"], [46, "mesh-adaptation"], [54, "mesh-adaptation"], [67, "mesh-adaptation"], [68, "mesh-adaptation"], [71, "mesh-adaptation"], [105, "mesh-adaptation"]], "FEM": [[18, "fem"], [27, "fem"], [51, "fem"], [53, "fem"], [67, "fem"], [68, "fem"]], "Non-linear Solver": [[18, "non-linear-solver"], [20, "non-linear-solver"], [21, "non-linear-solver"], [27, "non-linear-solver"], [28, "non-linear-solver"], [29, "non-linear-solver"], [67, "non-linear-solver"], [68, "non-linear-solver"], [72, "non-linear-solver"], [73, "non-linear-solver"], [74, "non-linear-solver"], [75, "non-linear-solver"], [76, "non-linear-solver"], [78, "non-linear-solver"], [108, "non-linear-solver"]], "Linear Solver": [[18, "linear-solver"], [20, "linear-solver"], [21, "linear-solver"], [25, "linear-solver"], [28, "linear-solver"], [29, "linear-solver"], [67, "linear-solver"], [68, "linear-solver"], [72, "linear-solver"], [73, "linear-solver"], [75, "linear-solver"], [76, "linear-solver"], [78, "linear-solver"], [102, "linear-solver"]], "Running the Simulations": [[18, "running-the-simulations"], [20, "running-the-simulations"], [21, "running-the-simulations"], [74, "running-the-simulations"]], "Low Reynolds Number (Re=100)": [[18, "low-reynolds-number-re-100"]], "Higher Reynolds Number (Re=1000)": [[18, "higher-reynolds-number-re-1000"]], "Validation and Comparison": [[18, "validation-and-comparison"]], "Reattachment Length": [[18, "reattachment-length"]], "Velocity Distribution": [[18, "velocity-distribution"]], "References": [[18, "references"], [20, "references"], [21, "references"], [23, "references"], [25, "references"], [27, "references"], [30, "references"], [31, "references"], [33, "references"], [34, "references"], [35, "references"], [36, "references"], [37, "references"], [40, "references"], [41, "references"], [43, "references"], [44, "references"], [45, "references"], [46, "references"], [47, "references"], [48, "references"], [49, "references"], [54, "references"], [55, "references"], [56, "references"], [58, "references"], [74, "references"], [78, "references"], [101, "references"], [109, "references"], [132, "references"], [134, "references"], [136, "references"], [144, "references"], [146, "references"], [148, "references"], [158, "references"], [167, "references"]], "Flow around a Cylinder": [[19, "flow-around-a-cylinder"]], "Manifolds": [[19, "manifolds"], [103, "manifolds"]], "Initial Conditions": [[19, "initial-conditions"], [26, "initial-conditions"], [31, "initial-conditions"], [33, "initial-conditions"], [34, "initial-conditions"], [35, "initial-conditions"], [37, "initial-conditions"], [41, "initial-conditions"], [44, "initial-conditions"], [45, "initial-conditions"], [46, "initial-conditions"], [47, "initial-conditions"], [48, "initial-conditions"], [54, "initial-conditions"], [62, "initial-conditions"], [67, "initial-conditions"], [68, "initial-conditions"], [71, "initial-conditions"], [72, "initial-conditions"], [73, "initial-conditions"], [75, "initial-conditions"], [76, "initial-conditions"], [78, "initial-conditions"], [100, "initial-conditions"]], "Forces": [[19, "forces"], [21, "forces"], [22, "forces"], [23, "forces"], [25, "forces"], [28, "forces"], [31, "forces"]], "Lid-Driven Cavity Flow": [[20, "lid-driven-cavity-flow"]], "FEM Interpolation": [[20, "fem-interpolation"], [22, "fem-interpolation"], [23, "fem-interpolation"], [25, "fem-interpolation"], [26, "fem-interpolation"], [30, "fem-interpolation"], [31, "fem-interpolation"]], "Base Case (Re=400)": [[20, "base-case-re-400"]], "Higher-Reynolds Case (Re=7500)": [[20, "higher-reynolds-case-re-7500"]], "Flow around NACA0012 at Low Reynolds Number": [[21, "flow-around-naca0012-at-low-reynolds-number"]], "Taylor-Couette Flow Using Nitsche Immersed Boundary": [[22, "taylor-couette-flow-using-nitsche-immersed-boundary"]], "Nitsche Mesh": [[22, "nitsche-mesh"]], "Analytical Solution": [[22, "analytical-solution"], [23, "analytical-solution"], [48, "analytical-solution"], [53, "analytical-solution"], [89, "analytical-solution"]], "Simulation Control and Mesh Refinement": [[22, "simulation-control-and-mesh-refinement"]], "Uniform Mesh Refinement": [[22, "uniform-mesh-refinement"], [22, "id1"]], "Adaptative Mesh Refinement": [[22, "adaptative-mesh-refinement"], [22, "id2"]], "Rest of the Subsections": [[22, "rest-of-the-subsections"], [23, "rest-of-the-subsections"]], "Taylor-Couette Flow": [[23, "taylor-couette-flow"]], "Transient Flow around an Ahmed Body": [[24, "transient-flow-around-an-ahmed-body"]], "Initial and Boundary Conditions": [[24, "initial-and-boundary-conditions"], [25, "initial-and-boundary-conditions"]], "Transient Flow around a Cylinder": [[25, "transient-flow-around-a-cylinder"]], "Flow around a Sphere": [[26, "flow-around-a-sphere"]], "First Case Results (Re=0.1)": [[26, "first-case-results-re-0-1"]], "Second Case Results (Re=150)": [[26, "second-case-results-re-150"]], "Third Case Results (Re=150 With an Adaptative Mesh Refinement)": [[26, "third-case-results-re-150-with-an-adaptative-mesh-refinement"]], "Flow over Periodic Hills": [[27, "flow-over-periodic-hills"]], "Flow Control": [[27, "flow-control"]], "Ribbon Mixer Using a Single Rotating Reference Frame": [[28, "ribbon-mixer-using-a-single-rotating-reference-frame"]], "Velocity Source": [[28, "velocity-source"], [117, "velocity-source"]], "Generating the Mesh": [[28, "generating-the-mesh"]], "Simulating for a Specific Flow Condition (Re=1)": [[28, "simulating-for-a-specific-flow-condition-re-1"], [28, "id2"]], "Generating N_p vs Re Curves (Re \\in [0.1, 100])": [[28, "generating-n-p-vs-re-curves-re-in-0-1-100"], [28, "id3"]], "Generating the Different Cases": [[28, "generating-the-different-cases"]], "Copying Files to the Cluster": [[28, "copying-files-to-the-cluster"]], "Submitting Jobs and Launching Simulations": [[28, "submitting-jobs-and-launching-simulations"]], "Have trouble submitting the jobs?": [[28, null]], "Copying Files to Your Local Computer (Using SFTP)": [[28, "copying-files-to-your-local-computer-using-sftp"]], "Postprocess Data": [[28, "postprocess-data"]], "Mixer with Pitched-Blade Turbine Impeller Using Nitsche Immersed Boundary": [[29, "mixer-with-pitched-blade-turbine-impeller-using-nitsche-immersed-boundary"]], "Nitsche Immersed Boundary Parameters": [[29, "nitsche-immersed-boundary-parameters"]], "Taylor-Green Vortex": [[30, "taylor-green-vortex"]], "Matrix-based - Non-linear Solver": [[30, "matrix-based-non-linear-solver"]], "Matrix-based - Linear Solver": [[30, "matrix-based-linear-solver"]], "Matrix-free  - Non-linear Solver": [[30, "matrix-free-non-linear-solver"]], "Matrix-free - Linear Solver": [[30, "matrix-free-linear-solver"]], "Turbulent Taylor-Couette Flow": [[31, "turbulent-taylor-couette-flow"]], "Other Subsections": [[31, "other-subsections"]], "Incompressible Flow": [[32, "incompressible-flow"], [65, "incompressible-flow"]], "3D Dam-Break with an Obstacle": [[33, "d-dam-break-with-an-obstacle"]], "Multiphysics": [[33, "multiphysics"], [34, "multiphysics"], [35, "multiphysics"], [36, "multiphysics"], [37, "multiphysics"], [39, "multiphysics"], [40, "multiphysics"], [41, "multiphysics"], [42, "multiphysics"], [43, "multiphysics"], [44, "multiphysics"], [45, "multiphysics"], [46, "multiphysics"], [47, "multiphysics"], [48, "multiphysics"], [51, "multiphysics"], [53, "multiphysics"], [54, "multiphysics"], [106, "multiphysics"], [164, "multiphysics"], [167, "multiphysics"]], "Source Term": [[33, "source-term"], [37, "source-term"], [41, "source-term"], [43, "source-term"], [45, "source-term"], [46, "source-term"], [47, "source-term"], [113, "source-term"]], "VOF": [[33, "vof"], [34, "vof"], [37, "vof"], [45, "vof"], [46, "vof"], [48, "vof"], [52, "vof"], [54, "vof"], [91, "vof"]], "Air Bubble Compression": [[34, "air-bubble-compression"]], "Boundary Conditions - Fluid Dynamics": [[34, "boundary-conditions-fluid-dynamics"], [54, "boundary-conditions-fluid-dynamics"]], "Boundary Conditions - VOF": [[34, "boundary-conditions-vof"], [54, "boundary-conditions-vof"]], "Capillary Wave": [[35, "capillary-wave"]], "Results for \\Delta t = 0.95\\Delta t_\\sigma": [[35, "results-for-delta-t-0-95-delta-t-sigma"]], "Results for \\Delta t = \\mathrm{TSM} \\times \\Delta t_\\sigma with \\mathrm{TSM} \\in \\{0.95,15,20\\}": [[35, "results-for-delta-t-mathrm-tsm-times-delta-t-sigma-with-mathrm-tsm-in-0-95-15-20"]], "Acknowledgment": [[35, "acknowledgment"]], "Concentric Heat Exchanger": [[36, "concentric-heat-exchanger"]], "Boundary Conditions Heat Transfer": [[36, "boundary-conditions-heat-transfer"]], "Dam-Break": [[37, "dam-break"]], "Interface Sharpening Parameters": [[37, "interface-sharpening-parameters"]], "Fluid Phase Parameters": [[37, "fluid-phase-parameters"]], "Heat Transfer": [[38, "heat-transfer"], [91, "heat-transfer"], [163, "heat-transfer"]], "Laser Heating": [[39, "laser-heating"]], "Laser Parameters": [[39, "laser-parameters"], [40, "laser-parameters"]], "Laser Melt Pool": [[40, "laser-melt-pool"]], "Melting Cavity": [[41, "melting-cavity"]], "Improving Computational Performances with Stasis Constraints": [[41, "improving-computational-performances-with-stasis-constraints"]], "Darcy Penalization: An Alternative Approach": [[41, "darcy-penalization-an-alternative-approach"]], "Rayleigh-B\u00e9nard Convection": [[43, "rayleigh-benard-convection"]], "Rayleigh-Plateau Instability": [[44, "rayleigh-plateau-instability"]], "Boundary Conditions VOF": [[44, "boundary-conditions-vof"]], "Simulation Results": [[44, "simulation-results"]], "Satellite Droplets": [[44, "satellite-droplets"]], "Code to Code Comparison": [[44, "code-to-code-comparison"]], "Rayleigh-Taylor Instability": [[45, "rayleigh-taylor-instability"]], "Rising Bubble": [[46, "rising-bubble"]], "Post-processing: Fluid Barycenter Position and Velocity": [[46, "post-processing-fluid-barycenter-position-and-velocity"]], "Sloshing in a Rectangular Tank": [[47, "sloshing-in-a-rectangular-tank"]], "Static Bubble": [[48, "static-bubble"]], "Surface Tension Force": [[48, "surface-tension-force"], [118, "surface-tension-force"]], "Mesh Convergence Study": [[48, "mesh-convergence-study"]], "Stefan Problem: Melting of a Solid": [[49, "stefan-problem-melting-of-a-solid"]], "Tracer": [[50, "tracer"], [91, "tracer"]], "Tracer through CAD Junction in Simplex": [[51, "tracer-through-cad-junction-in-simplex"]], "Generating a Geometry with SALOME": [[51, "generating-a-geometry-with-salome"]], "Adding the Boundary IDs from Gmsh": [[51, "adding-the-boundary-ids-from-gmsh"]], "Enabling the Simplex Mode": [[51, "enabling-the-simplex-mode"]], "Setting up the Tracer Physics": [[51, "setting-up-the-tracer-physics"]], "Tracer Boundary Conditions": [[51, "tracer-boundary-conditions"]], "Warming up a Viscous Fluid": [[53, "warming-up-a-viscous-fluid"]], "Visualizations": [[53, "visualizations"]], "Physical Interpretation": [[53, "physical-interpretation"]], "Bonuses": [[53, "bonuses"]], "Results for Water": [[53, "results-for-water"]], "Results without Viscous Dissipation": [[53, "results-without-viscous-dissipation"]], "Horizontal Domain": [[53, "horizontal-domain"]], "Water Injection in a Closed Cell": [[54, "water-injection-in-a-closed-cell"]], "Particle FEM Reconstruction": [[55, "particle-fem-reconstruction"]], "RPT Parameters": [[55, "rpt-parameters"], [56, "rpt-parameters"], [58, "rpt-parameters"], [136, "rpt-parameters"]], "Detector Parameters": [[55, "detector-parameters"], [56, "detector-parameters"], [132, "detector-parameters"]], "FEM Reconstruction Parameters": [[55, "fem-reconstruction-parameters"]], "Photon Count Calculation in a Cylindrical Vessel": [[56, "photon-count-calculation-in-a-cylindrical-vessel"]], "Scenario 1: Horizontal Translation of a Particle along the X-Axis": [[56, "scenario-1-horizontal-translation-of-a-particle-along-the-x-axis"]], "Scenario 2: Horizontal Translation of a Particle along the Y-Axis": [[56, "scenario-2-horizontal-translation-of-a-particle-along-the-y-axis"]], "Scenario 3: Vertical Translation of a Particle along the Z-Axis": [[56, "scenario-3-vertical-translation-of-a-particle-along-the-z-axis"]], "Scenario 4: Particle Going across the Vessel on a Diagonal Line": [[56, "scenario-4-particle-going-across-the-vessel-on-a-diagonal-line"]], "Sensitivity Analysis of the Monte Carlo Method": [[56, "sensitivity-analysis-of-the-monte-carlo-method"]], "Radioactive Particle Tracking (RPT)": [[57, "radioactive-particle-tracking-rpt"], [135, "radioactive-particle-tracking-rpt"]], "Tuning Count Calculation Model Parameters with NOMAD": [[58, "tuning-count-calculation-model-parameters-with-nomad"]], "Parameter Files": [[58, "parameter-files"]], "rpt-parameters.prm File": [[58, "rpt-parameters-prm-file"]], "Parameter Tuning": [[58, "parameter-tuning"], [134, "parameter-tuning"]], "Detector parameters": [[58, "detector-parameters"]], "param-nomad.txt File": [[58, "param-nomad-txt-file"]], "3D Mixer with Pitched-Blade Turbine Impeller Using Composite Sharp-Immersed Boundary": [[59, "d-mixer-with-pitched-blade-turbine-impeller-using-composite-sharp-immersed-boundary"]], "Creation of the Composite Shape File": [[59, "creation-of-the-composite-shape-file"], [61, "creation-of-the-composite-shape-file"], [70, "creation-of-the-composite-shape-file"]], "Definition of the Shape and Its Motion": [[59, "definition-of-the-shape-and-its-motion"], [60, "definition-of-the-shape-and-its-motion"]], "3D Mixer with Pitched-Blade Turbine Impeller Using OpenCascade Sharp-Immersed Boundary": [[60, "d-mixer-with-pitched-blade-turbine-impeller-using-opencascade-sharp-immersed-boundary"]], "Creation of the STEP File": [[60, "creation-of-the-step-file"]], "3D Static Mixer Using RBF Sharp Immersed Boundary": [[61, "d-static-mixer-using-rbf-sharp-immersed-boundary"]], "Preparation of the Solid": [[61, "preparation-of-the-solid"]], "Generation of the RBF file from the STL": [[61, "generation-of-the-rbf-file-from-the-stl"]], "Mesh and Mesh Adaptation": [[61, "mesh-and-mesh-adaptation"]], "Definition of the Shape": [[61, "definition-of-the-shape"]], "Post-Processing": [[61, "post-processing"]], "Flow around a Cylinder Using the Sharp Interface Method": [[62, "flow-around-a-cylinder-using-the-sharp-interface-method"]], "IB Particles": [[62, "ib-particles"], [67, "ib-particles"], [68, "ib-particles"]], "Geometry Definition": [[63, "geometry-definition"]], "Inclined 3D Mixer with Pitched-Blade Turbine Impeller Using Composite Sharp-Immersed Boundary": [[64, "inclined-3d-mixer-with-pitched-blade-turbine-impeller-using-composite-sharp-immersed-boundary"]], "Mesh definition": [[64, "mesh-definition"]], "Definition of the Impeller Motion": [[64, "definition-of-the-impeller-motion"]], "Resolved CFD-DEM": [[66, "resolved-cfd-dem"], [149, "resolved-cfd-dem"]], "Sedimentation of One Particle": [[67, "sedimentation-of-one-particle"]], "Sedimentation of 64 Particles": [[68, "sedimentation-of-64-particles"]], "Particles File": [[68, "particles-file"]], "Sharp Immersed Boundary Solver": [[69, "sharp-immersed-boundary-solver"]], "Simple Plane Model From Composite": [[70, "simple-plane-model-from-composite"]], "Non-Newtonian Flow past a Sphere": [[71, "non-newtonian-flow-past-a-sphere"]], "Particle": [[71, "particle"]], "Boycott Effect": [[72, "boycott-effect"]], "DEM Parameter File": [[72, "dem-parameter-file"], [73, "dem-parameter-file"], [75, "dem-parameter-file"], [76, "dem-parameter-file"], [77, "dem-parameter-file"], [78, "dem-parameter-file"]], "Running the DEM Simulation": [[72, "running-the-dem-simulation"], [73, "running-the-dem-simulation"], [75, "running-the-dem-simulation"], [76, "running-the-dem-simulation"], [77, "running-the-dem-simulation"], [78, "running-the-dem-simulation"]], "CFD-DEM Parameter File": [[72, "cfd-dem-parameter-file"], [75, "cfd-dem-parameter-file"], [76, "cfd-dem-parameter-file"], [77, "cfd-dem-parameter-file"], [78, "cfd-dem-parameter-file"]], "Void Fraction": [[72, "void-fraction"], [73, "void-fraction"], [74, "void-fraction"], [75, "void-fraction"], [76, "void-fraction"], [78, "void-fraction"], [140, "void-fraction"], [150, "void-fraction"]], "CFD-DEM": [[72, "cfd-dem"], [73, "cfd-dem"], [74, "cfd-dem"], [75, "cfd-dem"], [76, "cfd-dem"], [77, "cfd-dem"], [78, "cfd-dem"], [138, "cfd-dem"], [147, "cfd-dem"]], "Running the CFD-DEM Simulation": [[72, "running-the-cfd-dem-simulation"], [75, "running-the-cfd-dem-simulation"], [76, "running-the-cfd-dem-simulation"], [77, "running-the-cfd-dem-simulation"], [78, "running-the-cfd-dem-simulation"]], "Cylindrical Packed Bed": [[73, "cylindrical-packed-bed"]], "Results DEM": [[73, "results-dem"]], "VANS Parameter File": [[73, "vans-parameter-file"]], "Running the VANS Simulation": [[73, "running-the-vans-simulation"]], "Results VANS": [[73, "results-vans"]], "Dense Pneumatic Conveying": [[74, "dense-pneumatic-conveying"]], "Files Used in this Example": [[74, "files-used-in-this-example"]], "DEM Parameter files": [[74, "dem-parameter-files"]], "Loading Particles": [[74, "loading-particles"]], "Boundary Conditions DEM": [[74, "boundary-conditions-dem"]], "Settling Particles": [[74, "settling-particles"]], "CFD-DEM Parameter file": [[74, "cfd-dem-parameter-file"]], "Pneumatic Conveying Simulation": [[74, "pneumatic-conveying-simulation"]], "Flow control": [[74, "flow-control"]], "Mass Flow Rate and Velocities": [[74, "mass-flow-rate-and-velocities"]], "Time-averaged velocities at quasi-steady state.": [[74, "id21"]], "Gas-Solid Fluidized Bed": [[75, "gas-solid-fluidized-bed"]], "Gas-Solid Spouted Bed": [[76, "gas-solid-spouted-bed"]], "Gas-Solid Spouted Cylinder Bed": [[77, "gas-solid-spouted-cylinder-bed"]], "Total Pressure Drop": [[77, "total-pressure-drop"]], "Visualization": [[77, "visualization"]], "Liquid-Solid Fluidized Bed": [[78, "liquid-solid-fluidized-bed"]], "Side View": [[78, "side-view"]], "Total Pressure Drop and Bed Expansion": [[78, "total-pressure-drop-and-bed-expansion"]], "Particles Dynamics": [[78, "particles-dynamics"]], "Unresolved CFD-DEM": [[79, "unresolved-cfd-dem"], [139, "unresolved-cfd-dem"], [142, "unresolved-cfd-dem"], [150, "unresolved-cfd-dem"]], "Launching Your First Simulation": [[80, "launching-your-first-simulation"]], "Step 1: Copying an Example": [[80, "step-1-copying-an-example"]], "Step 2: Launching the Example": [[80, "step-2-launching-the-example"]], "Step 3: Post-processing the Results": [[80, "step-3-post-processing-the-results"]], "Understanding the Examples": [[80, "understanding-the-examples"]], "Lethe": [[81, "lethe"]], "Contents": [[81, "contents"]], "Installation": [[81, "installation"], [85, "installation"], [169, "installation"], [170, "installation"]], "Authors": [[81, "authors"]], "Installation on Apple ARM (M1 or M2)": [[82, "installation-on-apple-arm-m1-or-m2"]], "Installing deal.II Using Candi (Step #1)": [[82, "installing-deal-ii-using-candi-step-1"]], "Setting the Library and Include Paths": [[82, "setting-the-library-and-include-paths"]], "Fixing Trilinos Includes": [[82, "fixing-trilinos-includes"]], "Numdiff": [[82, "numdiff"]], "Installation of Lethe (Step #2)": [[82, "installation-of-lethe-step-2"]], "Running Lethe on Digital Research Alliance of Canada Clusters": [[83, "running-lethe-on-digital-research-alliance-of-canada-clusters"]], "Setting-up the Folder Structure": [[83, "setting-up-the-folder-structure"]], "Installing deal.II": [[83, "installing-deal-ii"]], "On Niagara, Beluga, Narval, Graham or Cedar": [[83, "on-niagara-beluga-narval-graham-or-cedar"]], "Installing Lethe": [[83, "installing-lethe"], [86, "installing-lethe"]], "Installing Numdiff to Enable Tests": [[83, "installing-numdiff-to-enable-tests"]], "Copying Local Files": [[83, "copying-local-files"]], "Creating a .dealii": [[83, "creating-a-dealii"]], "Launching Simulations": [[83, "launching-simulations"]], "Saving a SSH Key (Linux)": [[83, "saving-a-ssh-key-linux"]], "Docker": [[84, "docker"]], "No Compilation Required: Using the Provided Lethe Docker Image": [[84, "no-compilation-required-using-the-provided-lethe-docker-image"]], "Using a deal.II  Docker Container": [[84, "using-a-deal-ii-docker-container"]], "0. TL;DR": [[84, "tl-dr"]], "1. Get Docker": [[84, "get-docker"]], "2. Launch a deal.II Container": [[84, "launch-a-deal-ii-container"]], "3. Saving Docker Commands in a Bash Script": [[84, "saving-docker-commands-in-a-bash-script"]], "Final Notes": [[84, "final-notes"]], "Regular Installation on Linux": [[86, "regular-installation-on-linux"]], "Installing deal.II using apt": [[86, "installing-deal-ii-using-apt"]], "Installing deal.II using Candi": [[86, "installing-deal-ii-using-candi"]], "Testing Your Installation": [[86, "testing-your-installation"]], "Installing deal.II manually": [[86, "installing-deal-ii-manually"]], "Updating deal.II": [[86, "updating-deal-ii"]], "Through apt": [[86, "through-apt"], [87, "through-apt"]], "Through the Git Repository": [[86, "through-the-git-repository"]], "With Candi": [[86, "with-candi"], [87, "with-candi"]], "Windows with WSL": [[87, "windows-with-wsl"]], "Installing WSL and Ubuntu (Step #0)": [[87, "installing-wsl-and-ubuntu-step-0"]], "Verify the installed version of WSL": [[87, null]], "Installing deal.II using apt (Step #1)": [[87, "installing-deal-ii-using-apt-step-1"]], "Installing deal.II using Candi (Step #1)": [[87, "installing-deal-ii-using-candi-step-1"]], "Check the default version of the compilers": [[87, null]], "Installing Lethe (Step #2)": [[87, "installing-lethe-step-2"]], "Updating deal.II and Lethe": [[87, "updating-deal-ii-and-lethe"]], "Troubleshooting": [[87, "troubleshooting"]], "Change Compiler Default Version": [[87, "change-compiler-default-version"]], "Modify Candi Installation Parameters with Nano": [[87, "modify-candi-installation-parameters-with-nano"]], "Example for the candi.cfg": [[87, null]], "Arbitrary Lagrangian-Eulerian": [[88, "arbitrary-lagrangian-eulerian"]], "Boundary Conditions - CFD": [[90, "boundary-conditions-cfd"]], "Boundary Conditions - Multiphysics": [[91, "boundary-conditions-multiphysics"]], "Cahn-Hilliard": [[91, "cahn-hilliard"], [93, "cahn-hilliard"]], "Box Refinement": [[92, "box-refinement"]], "General, CFD and Multiphysics": [[94, "general-cfd-and-multiphysics"]], "Constrain Stasis": [[95, "constrain-stasis"]], "Dimensionality": [[96, "dimensionality"]], "Dynamic Flow Control": [[97, "dynamic-flow-control"]], "Finite Element Interpolation (FEM)": [[98, "finite-element-interpolation-fem"]], "Force and Torque Calculation": [[99, "force-and-torque-calculation"]], "Laser Heat Source": [[101, "laser-heat-source"]], "Laser types": [[101, "laser-types"]], "Example of a set verbosity = verbose output:": [[102, null]], "ILU preconditioner": [[102, "ilu-preconditioner"]], "AMG preconditioner": [[102, "amg-preconditioner"]], "LSMG and GCMG preconditioners": [[102, "lsmg-and-gcmg-preconditioners"]], "Understanding Manifolds": [[103, "understanding-manifolds"]], "Nitsche Immersed Boundary": [[107, "nitsche-immersed-boundary"]], "Examples of solid velocity Function expression:": [[107, null]], "Material Physical Property Models": [[109, "material-physical-property-models"]], "Two Phase Simulations": [[109, "two-phase-simulations"]], "Conjugate Heat Transfer": [[109, "conjugate-heat-transfer"]], "Immersed Solid Models": [[109, "immersed-solid-models"]], "Rheological Models": [[109, "rheological-models"]], "Power-Law Model": [[109, "power-law-model"]], "Carreau Model": [[109, "carreau-model"]], "Phase-Change Model": [[109, "phase-change-model"]], "Density Models": [[109, "density-models"]], "Thermal Conductivity Models": [[109, "thermal-conductivity-models"]], "Specific Heat Models": [[109, "specific-heat-models"]], "Thermal Expansion Models": [[109, "thermal-expansion-models"]], "Phase Change": [[109, "phase-change"]], "Interface Physical Property Models": [[109, "interface-physical-property-models"]], "Surface Tension Models": [[109, "surface-tension-models"]], "Cahn-Hilliard Mobility Models": [[109, "cahn-hilliard-mobility-models"]], "Example of temperature statistics table:": [[110, null]], "Example of heat flux table:": [[110, null]], "Examples of Function Expression": [[113, "examples-of-function-expression"]], "Stabilization": [[114, "stabilization"], [144, "stabilization"], [146, "stabilization"]], "Timer": [[115, "timer"], [130, "timer"]], "Tracer Drift Velocity": [[116, "tracer-drift-velocity"]], "Rotating Frame": [[117, "rotating-frame"]], "Darcy Penalization": [[117, "darcy-penalization"]], "Volume of Fluid (Multiphase Flow)": [[118, "volume-of-fluid-multiphase-flow"]], "Interface Sharpening": [[118, "interface-sharpening"], [146, "interface-sharpening"]], "Example of a warning message if sharpening is adaptive but the mass conservation tolerance is not reached:": [[118, null]], "Phase Filtration": [[118, "phase-filtration"]], "Choosing Values for the Surface Tension Force Filters": [[118, "choosing-values-for-the-surface-tension-force-filters"]], "Floating Wall": [[121, "floating-wall"]], "Volume": [[122, "volume"]], "Plane": [[122, "plane"]], "List": [[122, "list"]], "File": [[122, "file"]], "Contact Detection": [[125, "contact-detection"]], "contact detection method = dynamic": [[125, "contact-detection-method-dynamic"]], "contact detection method = constant": [[125, "contact-detection-method-constant"]], "Contact and Integration Methods": [[125, "contact-and-integration-methods"]], "Load Balancing": [[125, "load-balancing"]], "load balance method = once": [[125, "load-balance-method-once"]], "load balance method = frequent": [[125, "load-balance-method-frequent"]], "load balance method = dynamic": [[125, "load-balance-method-dynamic"]], "Adaptive Sparse Contacts (ASC)": [[125, "adaptive-sparse-contacts-asc"]], "Lagrangian post-processing": [[126, "lagrangian-post-processing"]], "Force chains post-processing": [[126, "force-chains-post-processing"]], "Test": [[129, "test"]], "Parameters Guide": [[131, "parameters-guide"]], "FEM Reconstruction": [[133, "fem-reconstruction"]], "Sharp-Immersed-Boundary": [[137, "sharp-immersed-boundary"]], "Publications": [[141, "publications"]], "2024": [[141, "id1"]], "2023": [[141, "id2"]], "2022": [[141, "id3"]], "2020": [[141, "id4"]], "Preprints": [[141, "preprints"]], "Referencing Lethe": [[142, "referencing-lethe"]], "Main Articles": [[142, "main-articles"]], "Discrete Element Method": [[142, "discrete-element-method"]], "Sharp-Edge Immersed Boundary Method": [[142, "sharp-edge-immersed-boundary-method"]], "Nitsche Immersed Boundary Method": [[142, "nitsche-immersed-boundary-method"]], "Non-Newtonian Fluids": [[142, "non-newtonian-fluids"]], "Radioactive Particle Tracking": [[142, "radioactive-particle-tracking"]], "Folder Structure of Lethe": [[143, "folder-structure-of-lethe"]], "The Lethe Folder": [[143, "the-lethe-folder"]], "Applications and Their Tests": [[143, "applications-and-their-tests"]], "The include and the source Folders": [[143, "the-include-and-the-source-folders"]], "The tests Folder": [[143, "the-tests-folder"]], "The prototypes Folder": [[143, "the-prototypes-folder"]], "The contrib Folder": [[143, "the-contrib-folder"]], "The doc Folder": [[143, "the-doc-folder"]], "The examples Folder": [[143, "the-examples-folder"]], "The logo Folder": [[143, "the-logo-folder"]], "The build Folder": [[143, "the-build-folder"]], "Cahn-Hilliard Method": [[144, "cahn-hilliard-method"]], "Finite Element Formulation": [[144, "finite-element-formulation"], [146, "finite-element-formulation"], [162, "finite-element-formulation"]], "Coupling to the Navier-Stokes equations": [[144, "coupling-to-the-navier-stokes-equations"]], "One-Fluid Models": [[145, "one-fluid-models"]], "The Volume of Fluid (VOF) Method": [[146, "the-volume-of-fluid-vof-method"]], "Interface Diffusion and Sharpening": [[146, "interface-diffusion-and-sharpening"]], "Interface Filtration": [[146, "interface-filtration"]], "Surface Tension": [[146, "surface-tension"]], "Normal and Curvature Computations": [[146, "normal-and-curvature-computations"]], "Contact Force and Torque Models": [[148, "contact-force-and-torque-models"]], "Relative Velocities": [[148, "relative-velocities"]], "Spring and damping constants": [[148, "spring-and-damping-constants"]], "Spring and damping Models used in Lethe.": [[148, "id20"]], "Coulomb\u2019s limit": [[148, "coulomb-s-limit"]], "Tangential torque": [[148, "tangential-torque"]], "Rolling friction models": [[148, "rolling-friction-models"]], "Rolling Friction Models used in Lethe.": [[148, "id21"]], "Cohesive force models": [[148, "cohesive-force-models"]], "Johnson-Kendall-Roberts force model": [[148, "johnson-kendall-roberts-force-model"]], "Derjaguin-Muller-Toporov force model": [[148, "derjaguin-muller-toporov-force-model"]], "Integration Methods": [[148, "integration-methods"]], "Particles": [[150, "particles"]], "Volume Average Navier-Stokes": [[150, "volume-average-navier-stokes"]], "The Particle Centroid Method": [[150, "the-particle-centroid-method"]], "The Satellite Point Method": [[150, "the-satellite-point-method"]], "The Quadrature Centered Method": [[150, "the-quadrature-centered-method"]], "Multiphase": [[151, "multiphase"], [167, "multiphase"]], "Electromagnetism": [[152, "electromagnetism"]], "Magnetohydrodynamics Equations": [[153, "magnetohydrodynamics-equations"]], "Time Harmonic Maxwell\u2019s Equations": [[154, "time-harmonic-maxwell-s-equations"]], "Finite Element Method for Time-Harmonic Maxwell\u2019s Equations": [[155, "finite-element-method-for-time-harmonic-maxwell-s-equations"]], "Origin of the Finite Element Formulation": [[156, "origin-of-the-finite-element-formulation"]], "Solving the Non-linear Problem": [[156, "solving-the-non-linear-problem"]], "Fluid Dynamics": [[157, "fluid-dynamics"]], "Linear Solvers": [[158, "linear-solvers"]], "General Theory on Krylov Methods": [[158, "general-theory-on-krylov-methods"]], "Generalized Minimal Residual Method (GMRES)": [[158, "generalized-minimal-residual-method-gmres"]], "Biconjugate Gradient Stabilized Method (BiCGStab)": [[158, "biconjugate-gradient-stabilized-method-bicgstab"]], "Some Remarks": [[158, "some-remarks"]], "Preconditioners": [[158, "preconditioners"]], "Incomplete LU Factorization (ILU)": [[158, "incomplete-lu-factorization-ilu"]], "Algebraic Multigrid (AMG)": [[158, "algebraic-multigrid-amg"]], "The Incompressible Navier-Stokes Equations": [[159, "the-incompressible-navier-stokes-equations"]], "Rheology and Non-Newtonian Fluids": [[160, "rheology-and-non-newtonian-fluids"]], "On the Need for Stabilization": [[161, "on-the-need-for-stabilization"]], "SUPG/PSPG Monolithic Formulation": [[161, "supg-pspg-monolithic-formulation"]], "Grad-Div Block Formulation": [[161, "grad-div-block-formulation"]], "Galerkin Least-Squares Formulation": [[161, "galerkin-least-squares-formulation"]], "Heat Transfer Equations": [[162, "heat-transfer-equations"]], "Stabilization Techniques": [[162, "stabilization-techniques"]], "Passive Tracer": [[165, "passive-tracer"]], "Passive Tracer Equations": [[166, "passive-tracer-equations"]], "Theory": [[167, "theory"]], "How to Automatically Create and Launch Lethe Simulations": [[168, "how-to-automatically-create-and-launch-lethe-simulations"]], "Generate Automatically Multiple Cases": [[168, "generate-automatically-multiple-cases"]], "Locally": [[168, "locally"], [168, "id1"]], "On Digital Alliance of Canada clusters": [[168, "on-digital-alliance-of-canada-clusters"], [168, "id2"]], "Launch Automatically Multiple Cases": [[168, "launch-automatically-multiple-cases"]], "Introduction on How to Use GMSH": [[169, "introduction-on-how-to-use-gmsh"]], "Geometry": [[169, "geometry"]], "Create and Edit the .geo File": [[169, "create-and-edit-the-geo-file"]], "Built-in kernel": [[169, "built-in-kernel"]], "OpenCASCADE Kernel": [[169, "opencascade-kernel"]], "Import CAD File": [[169, "import-cad-file"]], "Physical Groups": [[169, "physical-groups"]], "Unstructured": [[169, "unstructured"]], "Attractors for Local Mesh Refinement": [[169, "attractors-for-local-mesh-refinement"]], "Structured - Quad Mesh": [[169, "structured-quad-mesh"]], "Boundary Layer Mesh": [[169, "boundary-layer-mesh"]], "Other Tips": [[169, "other-tips"]], "Introduction on How to Use Pointwise": [[170, "introduction-on-how-to-use-pointwise"]], "Basics": [[170, "basics"]], "Moving Around": [[170, "moving-around"]], "Entities": [[170, "entities"]], "Menu Bar": [[170, "menu-bar"]], "Toolbar": [[170, "toolbar"]], "Useful Shortcuts": [[170, "useful-shortcuts"]], "Making your first 2D Geometry": [[170, "making-your-first-2d-geometry"]], "Assembling the geometry": [[170, "assembling-the-geometry"]], "Generating the mesh": [[170, "generating-the-mesh"]], "Assigning the boundary conditions and exporting the mesh": [[170, "assigning-the-boundary-conditions-and-exporting-the-mesh"]], "Moving to 3D": [[170, "moving-to-3d"]], "Extrusions": [[170, "extrusions"]], "Filling the center": [[170, "filling-the-center"]], "Remote Data Visualization on ParaView": [[171, "remote-data-visualization-on-paraview"]], "Client-server visualization": [[171, "client-server-visualization"]], "Splitting the output files in groups": [[171, "splitting-the-output-files-in-groups"]], "Post-processing Lethe with PyVista": [[172, "post-processing-lethe-with-pyvista"]], "Importing lethe_pyvista_tools": [[172, "importing-lethe-pyvista-tools"]], "Installing": [[172, "installing"]], "Importing without installing": [[172, "importing-without-installing"]], "Using lethe_pyvista_tools": [[172, "using-lethe-pyvista-tools"]], "Tools": [[173, "tools"]], "Updating Test Results": [[174, "updating-test-results"]], "Usage": [[174, "usage"]]}, "indexentries": {}})
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@@ -125,55 +125,56 @@
  CPowerLawParametersPower-law rheological model to solve for non Newtonian flows 
  CCarreauParametersCarreau model to solve for non Newtonian flows 
  CNonNewtonianNon Newtonian - Defines the parameters for non newtonian flows according to the chosen rheological model 
- CIsothermalIdealGasDensityParametersIsothermal ideal gas model to solve for isothermal weakly compressible fluid flows 
- CSurfaceTensionParametersSurfaceTensionParameters - Defines parameters for surface tension models 
- CMobilityCahnHilliardParametersMobilityCahnHilliardParameters - Defines parameters for the mobility models used in the Cahn-Hilliard equations 
- CMaterialMaterial - Class that defines the physical property of a material. Generally a material will be a fluid, but for conjugated heat transfer, this may also be a solid 
- CMaterialInteractionsMaterialInteractions - Class that defines physical properties due to interactions between two different materials (either fluid-fluid or fluid-solid) 
- CPhysicalPropertiesPhysicalProperties - Define the possible physical properties. All continuum equations share the same physical properties object but only take the subset of properties they require Defined as a class with public attributes in order to use a non-static declare_parameters methods (useful for multiple fluid simulations) 
- CConstrainSolidDomainSet of parameters constraining a certain portion of a fluid domain to null velocity and pressure fields to mimic a solid subdomain 
- CStabilizationStabilization - Defines parameters for an advanced control over the stabilization strategy used by the solvers 
- CTimerTimer - Defines the parameters that control the timing of the simulation. Lethe supports advanced timing features which supports the monitoring of specific sub-sections of the software to evaluate the relative workload 
- CForcesForces - Defines the parameters for the force calculation on boundaries of the domain 
- CLaser_FreeSurfaceRadiationLaser_FreeSurfaceRadiation - Defines the subparameters for the radiation sink at the free surface (air/metal interface) 
- CLaserLaser parameters - Defines the parameters for the laser heat source 
- CPostProcessingPostprocessing - Defines the parameters for the post-processing. In Lethe, post-processing implies the calculation of quantities derived from the principal variables. For example, the integral kinetic energy or the integral enstrophy 
- CFEMFEM - The finite element section controls the properties of the finite element method. This section controls the order of polynomial integration and the number of quadrature points within the cells 
- CNonLinearSolverNonLinearSolver - Parameter that controls the solution of the non-linear problems 
- CLinearSolverLinearSolver - Parameters that control the solution of the linear system of equations that arise from the finite element problem for each of the physics available in Lethe 
- CMeshMesh - Parameters that control mesh reading and mesh generation 
- CMultipleAdaptationParametersMesh Adaptation Parameters that can differ for each refinement variable 
- CMeshAdaptationMeshAdaption - Parameters that control dynamic mesh adaptation. Dynamic mesh adaptation in Lethe is very flexible and can be both local and global 
- CMeshBoxRefinement
- CTestingTesting - Some solvers have a specific testing mode that can be enabled to output more variables to the terminal. This is enabled using the Testing parameters 
- CRestartRestart - Controls writing and reading simulation checkpoints 
- CVelocitySourceVelocitySource - Adds velocity-dependent source term to the Navier-Stokes equations with the appropriate jacobian matrix. Currently only a change to a rotating frame is supported, but additional terms such as a Darcy force or similar could be easily added 
- CIBParticles
- CDynamicFlowControlFlowControl - Set average velocity on a boundary (CFD) or the domain (CFD-DEM) 
- CEvaporationEvaporation - Defines the subparameters for the evaporation cooling and recoil pressure at the free surface (air/metal interface) 
- CCahnHilliard_PhaseFilterCahnHilliard_PhaseFilter - Defines the parameters for the phase filtration of CahnHilliard physics 
- CVOF_InterfaceSharpeningVOF_InterfaceSharpening - Defines the parameters for interface sharpening in the VOF solver 
- CVOF_SurfaceTensionForceSurfaceTensionForce - Defines the parameters for the calculation of surface tension force in the VOF solver 
- CVOF_PhaseFilterVOF_PhaseFilter - Defines the parameters for the phase filtration 
- CVOFVOF - Defines the parameters for free surface simulations using the VOF method. Has to be declared before member creation in Multiphysics structure 
- CCahnHilliard
- CMultiphysicsMultiphysics - the parameters for multiphysics simulations and handles sub-physics parameters 
- CNitscheObject
- CNitsche
- CRigidSolidObject
- CDEMSolidObjects
- CVoidFraction
- CCFDDEM
- CRPTParametersRPTParameters - Defines the common parameters for the RPT simulation as fixed parameters, number of Monte Carlo iterations and filename of the particle positions 
- CRPTTuningParametersInitialRPTParameters - Allows parameters tuning. If turned on, other parameters values are the initial guess for the optimization, otherwise those act as fixed parameters 
- CDetectorParametersDetectorParameters - Defines information related to detectors. All detectors must have the same dimensions (r and l) 
- CRPTReconstructionParameters
- CRPTFEMReconstructionParametersFEMReconstructionParameters - Defines the parameters for the rpt_l2_projection_3d and rpt_fem_reconstruction_3d applications 
- CRamp_n
- CRamp_viscosity
- CRamp
- CInitialConditions
- CTracerDriftVelocityImplements a drift velocity function to account for simplified multiphase flows 
+ CImmersedSolidTanhParametersTanh-based physical properties model to handle properties in/out of immersed solids 
+ CIsothermalIdealGasDensityParametersIsothermal ideal gas model to solve for isothermal weakly compressible fluid flows 
+ CSurfaceTensionParametersSurfaceTensionParameters - Defines parameters for surface tension models 
+ CMobilityCahnHilliardParametersMobilityCahnHilliardParameters - Defines parameters for the mobility models used in the Cahn-Hilliard equations 
+ CMaterialMaterial - Class that defines the physical property of a material. Generally a material will be a fluid, but for conjugated heat transfer, this may also be a solid 
+ CMaterialInteractionsMaterialInteractions - Class that defines physical properties due to interactions between two different materials (either fluid-fluid or fluid-solid) 
+ CPhysicalPropertiesPhysicalProperties - Define the possible physical properties. All continuum equations share the same physical properties object but only take the subset of properties they require Defined as a class with public attributes in order to use a non-static declare_parameters methods (useful for multiple fluid simulations) 
+ CConstrainSolidDomainSet of parameters constraining a certain portion of a fluid domain to null velocity and pressure fields to mimic a solid subdomain 
+ CStabilizationStabilization - Defines parameters for an advanced control over the stabilization strategy used by the solvers 
+ CTimerTimer - Defines the parameters that control the timing of the simulation. Lethe supports advanced timing features which supports the monitoring of specific sub-sections of the software to evaluate the relative workload 
+ CForcesForces - Defines the parameters for the force calculation on boundaries of the domain 
+ CLaser_FreeSurfaceRadiationLaser_FreeSurfaceRadiation - Defines the subparameters for the radiation sink at the free surface (air/metal interface) 
+ CLaserLaser parameters - Defines the parameters for the laser heat source 
+ CPostProcessingPostprocessing - Defines the parameters for the post-processing. In Lethe, post-processing implies the calculation of quantities derived from the principal variables. For example, the integral kinetic energy or the integral enstrophy 
+ CFEMFEM - The finite element section controls the properties of the finite element method. This section controls the order of polynomial integration and the number of quadrature points within the cells 
+ CNonLinearSolverNonLinearSolver - Parameter that controls the solution of the non-linear problems 
+ CLinearSolverLinearSolver - Parameters that control the solution of the linear system of equations that arise from the finite element problem for each of the physics available in Lethe 
+ CMeshMesh - Parameters that control mesh reading and mesh generation 
+ CMultipleAdaptationParametersMesh Adaptation Parameters that can differ for each refinement variable 
+ CMeshAdaptationMeshAdaption - Parameters that control dynamic mesh adaptation. Dynamic mesh adaptation in Lethe is very flexible and can be both local and global 
+ CMeshBoxRefinement
+ CTestingTesting - Some solvers have a specific testing mode that can be enabled to output more variables to the terminal. This is enabled using the Testing parameters 
+ CRestartRestart - Controls writing and reading simulation checkpoints 
+ CVelocitySourceVelocitySource - Adds velocity-dependent source term to the Navier-Stokes equations with the appropriate jacobian matrix. Currently only a change to a rotating frame is supported, but additional terms such as a Darcy force or similar could be easily added 
+ CIBParticles
+ CDynamicFlowControlFlowControl - Set average velocity on a boundary (CFD) or the domain (CFD-DEM) 
+ CEvaporationEvaporation - Defines the subparameters for the evaporation cooling and recoil pressure at the free surface (air/metal interface) 
+ CCahnHilliard_PhaseFilterCahnHilliard_PhaseFilter - Defines the parameters for the phase filtration of CahnHilliard physics 
+ CVOF_InterfaceSharpeningVOF_InterfaceSharpening - Defines the parameters for interface sharpening in the VOF solver 
+ CVOF_SurfaceTensionForceSurfaceTensionForce - Defines the parameters for the calculation of surface tension force in the VOF solver 
+ CVOF_PhaseFilterVOF_PhaseFilter - Defines the parameters for the phase filtration 
+ CVOFVOF - Defines the parameters for free surface simulations using the VOF method. Has to be declared before member creation in Multiphysics structure 
+ CCahnHilliard
+ CMultiphysicsMultiphysics - the parameters for multiphysics simulations and handles sub-physics parameters 
+ CNitscheObject
+ CNitsche
+ CRigidSolidObject
+ CDEMSolidObjects
+ CVoidFraction
+ CCFDDEM
+ CRPTParametersRPTParameters - Defines the common parameters for the RPT simulation as fixed parameters, number of Monte Carlo iterations and filename of the particle positions 
+ CRPTTuningParametersInitialRPTParameters - Allows parameters tuning. If turned on, other parameters values are the initial guess for the optimization, otherwise those act as fixed parameters 
+ CDetectorParametersDetectorParameters - Defines information related to detectors. All detectors must have the same dimensions (r and l) 
+ CRPTReconstructionParameters
+ CRPTFEMReconstructionParametersFEMReconstructionParameters - Defines the parameters for the rpt_l2_projection_3d and rpt_fem_reconstruction_3d applications 
+ CRamp_n
+ CRamp_viscosity
+ CRamp
+ CInitialConditions
+ CTracerDriftVelocityImplements a drift velocity function to account for simplified multiphase flows 
  ►NSourceTerms
  CSourceTerm
  CAdaptiveSparseContactsMechanism that disables contacts computation through mobility status of cells based on granular temperature 
@@ -401,32 +402,33 @@
  CSurfaceTensionLinearLinear surface tension. The surface tension is given by: sigma_0 + dsimga/dT * (T-T_0) 
  CSurfaceTensionModelAbstract class that allows to calculate the surface tension coefficient 
  CSurfaceTensionPhaseChangeLinear surface tension with phase change. The surface tension is given by: alpha_l*(sigma_0 + dsigma/dT * (T-T_0)) 
- CThermalConductivityLinearImplements a linear temperature-dependent thermal conductivity of the form k = A + BT 
- CThermalConductivityModelAbstract class that allows to calculate the thermal conductivity on each quadrature point using the temperature of the fluid 
- CThermalConductivityPhaseChangeImplements a phase-dependent thermal conductivity 
- CThermalExpansionModelAbstract class that allows to calculate the thermal expansion coefficient (with unit of inverse temperature) 
- CThermalExpansionPhaseChangeImplements a phase-dependent thermal expansion coefficient 
- CThis
- CTorus
- CTracer
- CTracerAssemblerBaseA pure virtual class that serves as an interface for all of the assemblers for the Tracer equation 
- CTracerAssemblerBDFClass that assembles the transient time arising from BDF time integration for the Tracer equations. For example, if a BDF1 scheme is chosen, the following is assembled \(\frac{\mathbf{T}^{t+\Delta t}-\mathbf{T}^{t}}{\Delta t}\) 
- CTracerAssemblerCoreClass that assembles the core of the Tracer equation. This class assembles the weak form of: \(\mathbf{u} \cdot \nabla T - D \nabla^2 =0 \) with an SUPG stabilization 
- CTracerDiffusivityModelAbstract class that allows to calculates the tracer diffusivity 
- CTracerScratchDataClass that stores the information required by the assembly procedure for a Tracer advection-diffusion equation. Consequently, this class calculates the tracer (values, gradients, laplacians) and the shape function (values, gradients, laplacians) at all the gauss points for all degrees of freedom and stores it into arrays. Additionnaly, the use can request that this class gathers additional fields for physics which are coupled to the Tracer equation, such as the velocity which is required. This class serves as a seperation between the evaluation at the gauss point of the variables of interest and their use in the assembly, which is carried out by the assembler functions. For more information on this design, the reader can consult deal.II step-9 "https://www.dealii.org/current/doxygen/deal.II/step_9.html". In this latter example, the scratch is a struct instead of a templated class because of the simplicity of step-9 
- CUniformDistribution
- CUniformInsertion
- CVelocityVerletIntegrator
- CVisualization
- CVOFAssemblerBaseA pure virtual class that serves as an interface for all of the assemblers for the VOF solver 
- CVOFAssemblerBDFClass that assembles the transient time arising from BDF time integration for the VOF equations. For example, if a BDF1 scheme is chosen, the following is assembled \(\frac{\mathbf{T}^{t+\Delta t}-\mathbf{T}^{t}}{\Delta t}\) 
- CVOFAssemblerCoreClass that assembles the core of the VOF solver. According to the following weak form: \(\mathbf{u} \cdot T \cdot \nabla T =0 \) with an SUPG stabilization 
- CVOFScratchDataClass that stores the information required by the assembly procedure for a VOF free surface equation. Consequently, this class calculates the phase values (values, gradients, laplacians) and the shape method (values, gradients, laplacians) at all the gauss points for all degrees of freedom and stores it into arrays. This class serves as a separation between the evaluation at the gauss point of the variables of interest and their use in the assembly, which is carried out by the assembler methods 
- CVolumeOfFluid
- CVolumeOfFluidFilterBaseAbstract class for filtering phase fraction in volume of fluid (VOF) simulations 
- CVolumeOfFluidNoFilterDefault filter applied to phase fraction. The VolumeOfFluidNoFilter filter does not modify the phase fraction value and returns it as it is 
- CVolumeOfFluidTanhFilterFilter phase fraction with a hyperbolic tangent function for VOF simulations 
- CVorticityPostprocessorCompute the vorticity vector field within a domain 
+ CTanhLevelsetTracerDiffusivityDiffusivity that depends on the levelset 
+ CThermalConductivityLinearImplements a linear temperature-dependent thermal conductivity of the form k = A + BT 
+ CThermalConductivityModelAbstract class that allows to calculate the thermal conductivity on each quadrature point using the temperature of the fluid 
+ CThermalConductivityPhaseChangeImplements a phase-dependent thermal conductivity 
+ CThermalExpansionModelAbstract class that allows to calculate the thermal expansion coefficient (with unit of inverse temperature) 
+ CThermalExpansionPhaseChangeImplements a phase-dependent thermal expansion coefficient 
+ CThis
+ CTorus
+ CTracer
+ CTracerAssemblerBaseA pure virtual class that serves as an interface for all of the assemblers for the Tracer equation 
+ CTracerAssemblerBDFClass that assembles the transient time arising from BDF time integration for the Tracer equations. For example, if a BDF1 scheme is chosen, the following is assembled \(\frac{\mathbf{T}^{t+\Delta t}-\mathbf{T}^{t}}{\Delta t}\) 
+ CTracerAssemblerCoreClass that assembles the core of the Tracer equation. This class assembles the weak form of: \(\mathbf{u} \cdot \nabla T - D \nabla^2 =0 \) with an SUPG stabilization 
+ CTracerDiffusivityModelAbstract class that allows to calculates the tracer diffusivity 
+ CTracerScratchDataClass that stores the information required by the assembly procedure for a Tracer advection-diffusion equation. Consequently, this class calculates the tracer (values, gradients, laplacians) and the shape function (values, gradients, laplacians) at all the gauss points for all degrees of freedom and stores it into arrays. Additionnaly, the use can request that this class gathers additional fields for physics which are coupled to the Tracer equation, such as the velocity which is required. This class serves as a seperation between the evaluation at the gauss point of the variables of interest and their use in the assembly, which is carried out by the assembler functions. For more information on this design, the reader can consult deal.II step-9 "https://www.dealii.org/current/doxygen/deal.II/step_9.html". In this latter example, the scratch is a struct instead of a templated class because of the simplicity of step-9 
+ CUniformDistribution
+ CUniformInsertion
+ CVelocityVerletIntegrator
+ CVisualization
+ CVOFAssemblerBaseA pure virtual class that serves as an interface for all of the assemblers for the VOF solver 
+ CVOFAssemblerBDFClass that assembles the transient time arising from BDF time integration for the VOF equations. For example, if a BDF1 scheme is chosen, the following is assembled \(\frac{\mathbf{T}^{t+\Delta t}-\mathbf{T}^{t}}{\Delta t}\) 
+ CVOFAssemblerCoreClass that assembles the core of the VOF solver. According to the following weak form: \(\mathbf{u} \cdot T \cdot \nabla T =0 \) with an SUPG stabilization 
+ CVOFScratchDataClass that stores the information required by the assembly procedure for a VOF free surface equation. Consequently, this class calculates the phase values (values, gradients, laplacians) and the shape method (values, gradients, laplacians) at all the gauss points for all degrees of freedom and stores it into arrays. This class serves as a separation between the evaluation at the gauss point of the variables of interest and their use in the assembly, which is carried out by the assembler methods 
+ CVolumeOfFluid
+ CVolumeOfFluidFilterBaseAbstract class for filtering phase fraction in volume of fluid (VOF) simulations 
+ CVolumeOfFluidNoFilterDefault filter applied to phase fraction. The VolumeOfFluidNoFilter filter does not modify the phase fraction value and returns it as it is 
+ CVolumeOfFluidTanhFilterFilter phase fraction with a hyperbolic tangent function for VOF simulations 
+ CVorticityPostprocessorCompute the vorticity vector field within a domain 
 
 
    
 
    
diff --git a/doxygen/auxiliary__physics_8h_source.html b/doxygen/auxiliary__physics_8h_source.html
index 0e11e023d7..7bb384d6d8 100644
--- a/doxygen/auxiliary__physics_8h_source.html
+++ b/doxygen/auxiliary__physics_8h_source.html
@@ -294,8 +294,8 @@
 
 
    physics_solver.h
    
 
    simulation_parameters.h
    
-
    Parameters::MultipleAdaptationParameters
    Mesh Adaptation Parameters that can differ for each refinement variable.
    Definition: parameters.h:1279
    
-
    Parameters::NonLinearSolver
    NonLinearSolver - Parameter that controls the solution of the non-linear problems.
    Definition: parameters.h:986
    
+
    Parameters::MultipleAdaptationParameters
    Mesh Adaptation Parameters that can differ for each refinement variable.
    Definition: parameters.h:1305
    
+
    Parameters::NonLinearSolver
    NonLinearSolver - Parameter that controls the solution of the non-linear problems.
    Definition: parameters.h:1012
    
 
    
 
 
    
diff --git a/doxygen/cahn__hilliard_8h_source.html b/doxygen/cahn__hilliard_8h_source.html
index 46820437b7..a090c85a65 100644
--- a/doxygen/cahn__hilliard_8h_source.html
+++ b/doxygen/cahn__hilliard_8h_source.html
@@ -672,7 +672,7 @@
 
    cahn_hilliard
    @ cahn_hilliard
    Definition: multiphysics.h:30
    
 
    multiphysics_interface.h
    
 
    simulation_control.h
    
-
    Parameters::MultipleAdaptationParameters
    Mesh Adaptation Parameters that can differ for each refinement variable.
    Definition: parameters.h:1279
    
+
    Parameters::MultipleAdaptationParameters
    Mesh Adaptation Parameters that can differ for each refinement variable.
    Definition: parameters.h:1305
    
 
 
 
    GlobalVectorType
    dealii::TrilinosWrappers::MPI::Vector GlobalVectorType
    Definition: vector.h:31
    
diff --git a/doxygen/cahn__hilliard__scratch__data_8cc_source.html b/doxygen/cahn__hilliard__scratch__data_8cc_source.html
index 8c569ef192..3976ea28e8 100644
--- a/doxygen/cahn__hilliard__scratch__data_8cc_source.html
+++ b/doxygen/cahn__hilliard__scratch__data_8cc_source.html
@@ -228,9 +228,9 @@
 
    CahnHilliardScratchData::calculate_physical_properties
    void calculate_physical_properties()
    Calculates the physical properties that may be required by the Cahn-Hilliard problem....
    Definition: cahn_hilliard_scratch_data.cc:100
    
 
    fluid_fluid
    @ fluid_fluid
    Definition: physical_properties_manager.h:53
    
 
    field
    field
    Definition: physical_property_model.h:51
    
-
    phase_order_cahn_hilliard_filtered
    @ phase_order_cahn_hilliard_filtered
    Definition: physical_property_model.h:58
    
+
    phase_order_cahn_hilliard_filtered
    @ phase_order_cahn_hilliard_filtered
    Definition: physical_property_model.h:58
    
 
    phase_order_cahn_hilliard
    @ phase_order_cahn_hilliard
    Definition: physical_property_model.h:57
    
-
    set_field_vector
    void set_field_vector(const field &id, const std::vector< double > &data, std::map< field, std::vector< double >> &fields)
    Definition: physical_property_model.h:62
    
+
    set_field_vector
    void set_field_vector(const field &id, const std::vector< double > &data, std::map< field, std::vector< double >> &fields)
    Definition: physical_property_model.h:63
    
 
    
 
 
    
diff --git a/doxygen/classAverageVelocities.html b/doxygen/classAverageVelocities.html
index 3d37d9ef60..3fe4e103a7 100644
--- a/doxygen/classAverageVelocities.html
+++ b/doxygen/classAverageVelocities.html
@@ -264,7 +264,7 @@ 
    Definition at line 19 of file postprocessing_velocities.cc.
    
 
-
    References Parameters::PostProcessing::initial_time.
    
+
    References Parameters::PostProcessing::initial_time.
    diff --git a/doxygen/classCahnHilliardScratchData.html b/doxygen/classCahnHilliardScratchData.html index 8bee37a36c..d507cfb8d4 100644 --- a/doxygen/classCahnHilliardScratchData.html +++ b/doxygen/classCahnHilliardScratchData.html @@ -372,7 +372,7 @@

    Definition at line 100 of file cahn_hilliard_scratch_data.cc.

    -

    References fluid_fluid, phase_order_cahn_hilliard, and set_field_vector().

    +

    References fluid_fluid, phase_order_cahn_hilliard, and set_field_vector().

    diff --git a/doxygen/classCarreau.html b/doxygen/classCarreau.html index 25bd5f6b1e..5910b8a766 100644 --- a/doxygen/classCarreau.html +++ b/doxygen/classCarreau.html @@ -531,7 +531,7 @@

    Definition at line 120 of file rheological_model.cc.

    -

    References PhysicalPropertyModel::numerical_jacobian(), and shear_rate.

    +

    References PhysicalPropertyModel::numerical_jacobian(), and shear_rate.

    @@ -700,7 +700,7 @@

    Definition at line 134 of file rheological_model.cc.

    -

    References shear_rate, and PhysicalPropertyModel::vector_numerical_jacobian().

    +

    References shear_rate, and PhysicalPropertyModel::vector_numerical_jacobian().

    diff --git a/doxygen/classCompositeShape.html b/doxygen/classCompositeShape.html index ad72aac27e..c2c2d0e538 100644 --- a/doxygen/classCompositeShape.html +++ b/doxygen/classCompositeShape.html @@ -440,6 +440,8 @@

    Definition at line 1545 of file shape.cc.

    +

    References levelset.

    + @@ -521,6 +523,8 @@

    Definition at line 1384 of file shape.cc.

    +

    References levelset.

    + @@ -579,6 +583,8 @@

    Definition at line 1433 of file shape.cc.

    +

    References levelset.

    + @@ -798,6 +804,8 @@

    Definition at line 1304 of file shape.cc.

    +

    References levelset.

    + @@ -856,6 +864,8 @@

    Definition at line 1341 of file shape.cc.

    +

    References levelset.

    +

    Member Data Documentation

    diff --git a/doxygen/classDEMSolverParameters.html b/doxygen/classDEMSolverParameters.html index 5fcbdf40a5..d4440b2201 100644 --- a/doxygen/classDEMSolverParameters.html +++ b/doxygen/classDEMSolverParameters.html @@ -158,7 +158,7 @@

    Definition at line 51 of file dem_solver_parameters.h.

    -

    References DEMSolverParameters< dim >::boundary_conditions, Parameters::SimulationControl::declare_parameters(), Parameters::Timer::declare_parameters(), Parameters::Mesh::declare_parameters(), Parameters::Testing::declare_parameters(), Parameters::Restart::declare_parameters(), Parameters::Lagrangian::LagrangianPhysicalProperties::declare_parameters(), Parameters::Lagrangian::InsertionInfo::declare_parameters(), Parameters::Lagrangian::ModelParameters::declare_parameters(), Parameters::Lagrangian::BCDEM::declare_parameters(), Parameters::Lagrangian::LagrangianPostProcessing::declare_parameters(), DEMSolverParameters< dim >::floating_grid, DEMSolverParameters< dim >::floating_walls, DEMSolverParameters< dim >::forces_torques, DEMSolverParameters< dim >::grid_motion, DEMSolverParameters< dim >::lagrangian_physical_properties, DEMSolverParameters< dim >::post_processing, and DEMSolverParameters< dim >::solid_objects.

    +

    References DEMSolverParameters< dim >::boundary_conditions, Parameters::SimulationControl::declare_parameters(), Parameters::Timer::declare_parameters(), Parameters::Mesh::declare_parameters(), Parameters::Testing::declare_parameters(), Parameters::Restart::declare_parameters(), Parameters::Lagrangian::LagrangianPhysicalProperties::declare_parameters(), Parameters::Lagrangian::InsertionInfo::declare_parameters(), Parameters::Lagrangian::ModelParameters::declare_parameters(), Parameters::Lagrangian::BCDEM::declare_parameters(), Parameters::Lagrangian::LagrangianPostProcessing::declare_parameters(), DEMSolverParameters< dim >::floating_grid, DEMSolverParameters< dim >::floating_walls, DEMSolverParameters< dim >::forces_torques, DEMSolverParameters< dim >::grid_motion, DEMSolverParameters< dim >::lagrangian_physical_properties, DEMSolverParameters< dim >::post_processing, and DEMSolverParameters< dim >::solid_objects.

    @@ -190,7 +190,7 @@

    Definition at line 76 of file dem_solver_parameters.h.

    -

    References DEMSolverParameters< dim >::boundary_conditions, DEMSolverParameters< dim >::floating_grid, DEMSolverParameters< dim >::floating_walls, DEMSolverParameters< dim >::forces_torques, DEMSolverParameters< dim >::grid_motion, DEMSolverParameters< dim >::insertion_info, DEMSolverParameters< dim >::lagrangian_physical_properties, DEMSolverParameters< dim >::mesh, DEMSolverParameters< dim >::model_parameters, Parameters::SimulationControl::parse_parameters(), Parameters::Timer::parse_parameters(), Parameters::Mesh::parse_parameters(), Parameters::Testing::parse_parameters(), Parameters::Restart::parse_parameters(), Parameters::Lagrangian::LagrangianPhysicalProperties::parse_parameters(), Parameters::Lagrangian::InsertionInfo::parse_parameters(), Parameters::Lagrangian::ModelParameters::parse_parameters(), Parameters::Lagrangian::BCDEM::parse_parameters(), Parameters::Lagrangian::LagrangianPostProcessing::parse_parameters(), DEMSolverParameters< dim >::post_processing, DEMSolverParameters< dim >::restart, DEMSolverParameters< dim >::simulation_control, DEMSolverParameters< dim >::solid_objects, DEMSolverParameters< dim >::test, and DEMSolverParameters< dim >::timer.

    +

    References DEMSolverParameters< dim >::boundary_conditions, DEMSolverParameters< dim >::floating_grid, DEMSolverParameters< dim >::floating_walls, DEMSolverParameters< dim >::forces_torques, DEMSolverParameters< dim >::grid_motion, DEMSolverParameters< dim >::insertion_info, DEMSolverParameters< dim >::lagrangian_physical_properties, DEMSolverParameters< dim >::mesh, DEMSolverParameters< dim >::model_parameters, Parameters::SimulationControl::parse_parameters(), Parameters::Timer::parse_parameters(), Parameters::Mesh::parse_parameters(), Parameters::Testing::parse_parameters(), Parameters::Restart::parse_parameters(), Parameters::Lagrangian::LagrangianPhysicalProperties::parse_parameters(), Parameters::Lagrangian::InsertionInfo::parse_parameters(), Parameters::Lagrangian::ModelParameters::parse_parameters(), Parameters::Lagrangian::BCDEM::parse_parameters(), Parameters::Lagrangian::LagrangianPostProcessing::parse_parameters(), DEMSolverParameters< dim >::post_processing, DEMSolverParameters< dim >::restart, DEMSolverParameters< dim >::simulation_control, DEMSolverParameters< dim >::solid_objects, DEMSolverParameters< dim >::test, and DEMSolverParameters< dim >::timer.

    diff --git a/doxygen/classDensityIsothermalIdealGas.html b/doxygen/classDensityIsothermalIdealGas.html index 9257fc449c..53f82eade2 100644 --- a/doxygen/classDensityIsothermalIdealGas.html +++ b/doxygen/classDensityIsothermalIdealGas.html @@ -205,7 +205,7 @@

    Definition at line 247 of file density_model.h.

    -

    References PhysicalPropertyModel::model_depends_on, and pressure.

    +

    References PhysicalPropertyModel::model_depends_on, and pressure.

    diff --git a/doxygen/classDensityModel.html b/doxygen/classDensityModel.html index 101c4f5682..56eafbead1 100644 --- a/doxygen/classDensityModel.html +++ b/doxygen/classDensityModel.html @@ -273,7 +273,7 @@

    Definition at line 20 of file density_model.cc.

    -

    References Parameters::Material::density, Parameters::Material::density_model, Parameters::IsothermalIdealGasDensityParameters::density_ref, Parameters::Material::isothermal_ideal_gas, Parameters::Material::isothermal_ideal_gas_density_parameters, Parameters::IsothermalIdealGasDensityParameters::R, and Parameters::IsothermalIdealGasDensityParameters::T.

    +

    References Parameters::Material::density, Parameters::Material::density_model, Parameters::IsothermalIdealGasDensityParameters::density_ref, Parameters::Material::isothermal_ideal_gas, Parameters::Material::isothermal_ideal_gas_density_parameters, Parameters::IsothermalIdealGasDensityParameters::R, and Parameters::IsothermalIdealGasDensityParameters::T.

    diff --git a/doxygen/classGLSNavierStokesCahnHilliardAssemblerCore.html b/doxygen/classGLSNavierStokesCahnHilliardAssemblerCore.html index f3d00d4e09..0a24ac9ba6 100644 --- a/doxygen/classGLSNavierStokesCahnHilliardAssemblerCore.html +++ b/doxygen/classGLSNavierStokesCahnHilliardAssemblerCore.html @@ -213,7 +213,7 @@

    Definition at line 11 of file navier_stokes_cahn_hilliard_assemblers.cc.

    -

    References calculate_navier_stokes_gls_tau_steady(), calculate_navier_stokes_gls_tau_transient(), NavierStokesScratchData< dim >::cell_size, NavierStokesScratchData< dim >::chemical_potential_cahn_hilliard_values, NavierStokesScratchData< dim >::density, PhysicalPropertiesManager::density_is_constant(), NavierStokesScratchData< dim >::div_phi_u, NavierStokesScratchData< dim >::dynamic_viscosity, NavierStokesScratchData< dim >::dynamic_viscosity_for_stabilization, NavierStokesScratchData< dim >::force, NavierStokesScratchData< dim >::grad_phi_p, NavierStokesScratchData< dim >::grad_phi_u, NavierStokesScratchData< dim >::JxW, NavierStokesScratchData< dim >::laplacian_phi_u, StabilizedMethodsTensorCopyData< dim >::local_matrix, NavierStokesScratchData< dim >::n_dofs, NavierStokesScratchData< dim >::n_q_points, NavierStokesScratchData< dim >::phase_order_cahn_hilliard_gradients, NavierStokesScratchData< dim >::phi_p, NavierStokesScratchData< dim >::phi_u, NavierStokesScratchData< dim >::pressure_gradients, NavierStokesScratchData< dim >::pressure_scaling_factor, NavierStokesScratchData< dim >::properties_manager, Parameters::SimulationControl::steady, StabilizedMethodsTensorCopyData< dim >::strong_jacobian, StabilizedMethodsTensorCopyData< dim >::strong_residual, velocity, NavierStokesScratchData< dim >::velocity_gradients, NavierStokesScratchData< dim >::velocity_hessians, NavierStokesScratchData< dim >::velocity_laplacians, and NavierStokesScratchData< dim >::velocity_values.

    +

    References calculate_navier_stokes_gls_tau_steady(), calculate_navier_stokes_gls_tau_transient(), NavierStokesScratchData< dim >::cell_size, NavierStokesScratchData< dim >::chemical_potential_cahn_hilliard_values, NavierStokesScratchData< dim >::density, PhysicalPropertiesManager::density_is_constant(), NavierStokesScratchData< dim >::div_phi_u, NavierStokesScratchData< dim >::dynamic_viscosity, NavierStokesScratchData< dim >::dynamic_viscosity_for_stabilization, NavierStokesScratchData< dim >::force, NavierStokesScratchData< dim >::grad_phi_p, NavierStokesScratchData< dim >::grad_phi_u, NavierStokesScratchData< dim >::JxW, NavierStokesScratchData< dim >::laplacian_phi_u, StabilizedMethodsTensorCopyData< dim >::local_matrix, NavierStokesScratchData< dim >::n_dofs, NavierStokesScratchData< dim >::n_q_points, NavierStokesScratchData< dim >::phase_order_cahn_hilliard_gradients, NavierStokesScratchData< dim >::phi_p, NavierStokesScratchData< dim >::phi_u, NavierStokesScratchData< dim >::pressure_gradients, NavierStokesScratchData< dim >::pressure_scaling_factor, NavierStokesScratchData< dim >::properties_manager, Parameters::SimulationControl::steady, StabilizedMethodsTensorCopyData< dim >::strong_jacobian, StabilizedMethodsTensorCopyData< dim >::strong_residual, velocity, NavierStokesScratchData< dim >::velocity_gradients, NavierStokesScratchData< dim >::velocity_hessians, NavierStokesScratchData< dim >::velocity_laplacians, and NavierStokesScratchData< dim >::velocity_values.

    @@ -266,7 +266,7 @@

    Definition at line 189 of file navier_stokes_cahn_hilliard_assemblers.cc.

    -

    References calculate_navier_stokes_gls_tau_steady(), calculate_navier_stokes_gls_tau_transient(), NavierStokesScratchData< dim >::cell_size, NavierStokesScratchData< dim >::chemical_potential_cahn_hilliard_values, NavierStokesScratchData< dim >::density, PhysicalPropertiesManager::density_is_constant(), NavierStokesScratchData< dim >::div_phi_u, NavierStokesScratchData< dim >::dynamic_viscosity, NavierStokesScratchData< dim >::dynamic_viscosity_for_stabilization, NavierStokesScratchData< dim >::force, NavierStokesScratchData< dim >::grad_phi_p, NavierStokesScratchData< dim >::grad_phi_u, NavierStokesScratchData< dim >::JxW, StabilizedMethodsTensorCopyData< dim >::local_rhs, NavierStokesScratchData< dim >::n_dofs, NavierStokesScratchData< dim >::n_q_points, NavierStokesScratchData< dim >::phase_order_cahn_hilliard_gradients, NavierStokesScratchData< dim >::phi_p, NavierStokesScratchData< dim >::phi_u, pressure, NavierStokesScratchData< dim >::pressure_gradients, NavierStokesScratchData< dim >::pressure_values, NavierStokesScratchData< dim >::properties_manager, shear_rate, Parameters::SimulationControl::steady, StabilizedMethodsTensorCopyData< dim >::strong_residual, velocity, NavierStokesScratchData< dim >::velocity_divergences, NavierStokesScratchData< dim >::velocity_gradients, NavierStokesScratchData< dim >::velocity_hessians, NavierStokesScratchData< dim >::velocity_laplacians, and NavierStokesScratchData< dim >::velocity_values.

    +

    References calculate_navier_stokes_gls_tau_steady(), calculate_navier_stokes_gls_tau_transient(), NavierStokesScratchData< dim >::cell_size, NavierStokesScratchData< dim >::chemical_potential_cahn_hilliard_values, NavierStokesScratchData< dim >::density, PhysicalPropertiesManager::density_is_constant(), NavierStokesScratchData< dim >::div_phi_u, NavierStokesScratchData< dim >::dynamic_viscosity, NavierStokesScratchData< dim >::dynamic_viscosity_for_stabilization, NavierStokesScratchData< dim >::force, NavierStokesScratchData< dim >::grad_phi_p, NavierStokesScratchData< dim >::grad_phi_u, NavierStokesScratchData< dim >::JxW, StabilizedMethodsTensorCopyData< dim >::local_rhs, NavierStokesScratchData< dim >::n_dofs, NavierStokesScratchData< dim >::n_q_points, NavierStokesScratchData< dim >::phase_order_cahn_hilliard_gradients, NavierStokesScratchData< dim >::phi_p, NavierStokesScratchData< dim >::phi_u, pressure, NavierStokesScratchData< dim >::pressure_gradients, NavierStokesScratchData< dim >::pressure_values, NavierStokesScratchData< dim >::properties_manager, shear_rate, Parameters::SimulationControl::steady, StabilizedMethodsTensorCopyData< dim >::strong_residual, velocity, NavierStokesScratchData< dim >::velocity_divergences, NavierStokesScratchData< dim >::velocity_gradients, NavierStokesScratchData< dim >::velocity_hessians, NavierStokesScratchData< dim >::velocity_laplacians, and NavierStokesScratchData< dim >::velocity_values.

    diff --git a/doxygen/classGLSNavierStokesVOFAssemblerCore.html b/doxygen/classGLSNavierStokesVOFAssemblerCore.html index 253f1b8163..b2449db508 100644 --- a/doxygen/classGLSNavierStokesVOFAssemblerCore.html +++ b/doxygen/classGLSNavierStokesVOFAssemblerCore.html @@ -213,7 +213,7 @@

    Definition at line 11 of file navier_stokes_vof_assemblers.cc.

    -

    References calculate_navier_stokes_gls_tau_steady(), calculate_navier_stokes_gls_tau_transient(), NavierStokesScratchData< dim >::cell_size, NavierStokesScratchData< dim >::components, NavierStokesScratchData< dim >::density, PhysicalPropertiesManager::density_is_constant(), NavierStokesScratchData< dim >::div_phi_u, NavierStokesScratchData< dim >::dynamic_viscosity, NavierStokesScratchData< dim >::dynamic_viscosity_for_stabilization, NavierStokesScratchData< dim >::force, NavierStokesScratchData< dim >::grad_phi_p, NavierStokesScratchData< dim >::grad_phi_u, NavierStokesScratchData< dim >::JxW, NavierStokesScratchData< dim >::laplacian_phi_u, StabilizedMethodsTensorCopyData< dim >::local_matrix, NavierStokesScratchData< dim >::n_dofs, NavierStokesScratchData< dim >::n_q_points, NavierStokesScratchData< dim >::phi_p, NavierStokesScratchData< dim >::phi_u, NavierStokesScratchData< dim >::pressure_gradients, NavierStokesScratchData< dim >::pressure_scaling_factor, NavierStokesScratchData< dim >::properties_manager, Parameters::SimulationControl::steady, StabilizedMethodsTensorCopyData< dim >::strong_jacobian, StabilizedMethodsTensorCopyData< dim >::strong_residual, velocity, NavierStokesScratchData< dim >::velocity_gradients, NavierStokesScratchData< dim >::velocity_hessians, NavierStokesScratchData< dim >::velocity_laplacians, and NavierStokesScratchData< dim >::velocity_values.

    +

    References calculate_navier_stokes_gls_tau_steady(), calculate_navier_stokes_gls_tau_transient(), NavierStokesScratchData< dim >::cell_size, NavierStokesScratchData< dim >::components, NavierStokesScratchData< dim >::density, PhysicalPropertiesManager::density_is_constant(), NavierStokesScratchData< dim >::div_phi_u, NavierStokesScratchData< dim >::dynamic_viscosity, NavierStokesScratchData< dim >::dynamic_viscosity_for_stabilization, NavierStokesScratchData< dim >::force, NavierStokesScratchData< dim >::grad_phi_p, NavierStokesScratchData< dim >::grad_phi_u, NavierStokesScratchData< dim >::JxW, NavierStokesScratchData< dim >::laplacian_phi_u, StabilizedMethodsTensorCopyData< dim >::local_matrix, NavierStokesScratchData< dim >::n_dofs, NavierStokesScratchData< dim >::n_q_points, NavierStokesScratchData< dim >::phi_p, NavierStokesScratchData< dim >::phi_u, NavierStokesScratchData< dim >::pressure_gradients, NavierStokesScratchData< dim >::pressure_scaling_factor, NavierStokesScratchData< dim >::properties_manager, Parameters::SimulationControl::steady, StabilizedMethodsTensorCopyData< dim >::strong_jacobian, StabilizedMethodsTensorCopyData< dim >::strong_residual, velocity, NavierStokesScratchData< dim >::velocity_gradients, NavierStokesScratchData< dim >::velocity_hessians, NavierStokesScratchData< dim >::velocity_laplacians, and NavierStokesScratchData< dim >::velocity_values.

    @@ -266,7 +266,7 @@

    Definition at line 206 of file navier_stokes_vof_assemblers.cc.

    -

    References calculate_navier_stokes_gls_tau_steady(), calculate_navier_stokes_gls_tau_transient(), NavierStokesScratchData< dim >::cell_size, NavierStokesScratchData< dim >::components, NavierStokesScratchData< dim >::density, PhysicalPropertiesManager::density_is_constant(), NavierStokesScratchData< dim >::div_phi_u, NavierStokesScratchData< dim >::dynamic_viscosity, NavierStokesScratchData< dim >::dynamic_viscosity_for_stabilization, NavierStokesScratchData< dim >::force, NavierStokesScratchData< dim >::grad_phi_p, NavierStokesScratchData< dim >::grad_phi_u, NavierStokesScratchData< dim >::JxW, StabilizedMethodsTensorCopyData< dim >::local_rhs, NavierStokesScratchData< dim >::n_dofs, NavierStokesScratchData< dim >::n_q_points, NavierStokesScratchData< dim >::phi_p, NavierStokesScratchData< dim >::phi_u, pressure, NavierStokesScratchData< dim >::pressure_gradients, NavierStokesScratchData< dim >::pressure_values, NavierStokesScratchData< dim >::properties_manager, shear_rate, Parameters::SimulationControl::steady, StabilizedMethodsTensorCopyData< dim >::strong_residual, velocity, NavierStokesScratchData< dim >::velocity_divergences, NavierStokesScratchData< dim >::velocity_gradients, NavierStokesScratchData< dim >::velocity_hessians, NavierStokesScratchData< dim >::velocity_laplacians, and NavierStokesScratchData< dim >::velocity_values.

    +

    References calculate_navier_stokes_gls_tau_steady(), calculate_navier_stokes_gls_tau_transient(), NavierStokesScratchData< dim >::cell_size, NavierStokesScratchData< dim >::components, NavierStokesScratchData< dim >::density, PhysicalPropertiesManager::density_is_constant(), NavierStokesScratchData< dim >::div_phi_u, NavierStokesScratchData< dim >::dynamic_viscosity, NavierStokesScratchData< dim >::dynamic_viscosity_for_stabilization, NavierStokesScratchData< dim >::force, NavierStokesScratchData< dim >::grad_phi_p, NavierStokesScratchData< dim >::grad_phi_u, NavierStokesScratchData< dim >::JxW, StabilizedMethodsTensorCopyData< dim >::local_rhs, NavierStokesScratchData< dim >::n_dofs, NavierStokesScratchData< dim >::n_q_points, NavierStokesScratchData< dim >::phi_p, NavierStokesScratchData< dim >::phi_u, pressure, NavierStokesScratchData< dim >::pressure_gradients, NavierStokesScratchData< dim >::pressure_values, NavierStokesScratchData< dim >::properties_manager, shear_rate, Parameters::SimulationControl::steady, StabilizedMethodsTensorCopyData< dim >::strong_residual, velocity, NavierStokesScratchData< dim >::velocity_divergences, NavierStokesScratchData< dim >::velocity_gradients, NavierStokesScratchData< dim >::velocity_hessians, NavierStokesScratchData< dim >::velocity_laplacians, and NavierStokesScratchData< dim >::velocity_values.

    diff --git a/doxygen/classGLSNavierStokesVOFAssemblerMarangoni.html b/doxygen/classGLSNavierStokesVOFAssemblerMarangoni.html index 609157a87c..c07f2255cf 100644 --- a/doxygen/classGLSNavierStokesVOFAssemblerMarangoni.html +++ b/doxygen/classGLSNavierStokesVOFAssemblerMarangoni.html @@ -263,7 +263,7 @@

    Definition at line 696 of file navier_stokes_vof_assemblers.cc.

    -

    References NavierStokesScratchData< dim >::curvature_values, PhysicalPropertiesManager::density_is_constant(), NavierStokesScratchData< dim >::filtered_phase_gradient_values, NavierStokesScratchData< dim >::JxW, StabilizedMethodsTensorCopyData< dim >::local_rhs, NavierStokesScratchData< dim >::n_dofs, NavierStokesScratchData< dim >::n_q_points, NavierStokesScratchData< dim >::phase_gradient_values, NavierStokesScratchData< dim >::phi_u, NavierStokesScratchData< dim >::properties_manager, StabilizedMethodsTensorCopyData< dim >::strong_residual, NavierStokesScratchData< dim >::surface_tension, NavierStokesScratchData< dim >::surface_tension_gradient, and NavierStokesScratchData< dim >::temperature_gradients.

    +

    References NavierStokesScratchData< dim >::curvature_values, PhysicalPropertiesManager::density_is_constant(), NavierStokesScratchData< dim >::filtered_phase_gradient_values, NavierStokesScratchData< dim >::JxW, StabilizedMethodsTensorCopyData< dim >::local_rhs, NavierStokesScratchData< dim >::n_dofs, NavierStokesScratchData< dim >::n_q_points, NavierStokesScratchData< dim >::phase_gradient_values, NavierStokesScratchData< dim >::phi_u, NavierStokesScratchData< dim >::properties_manager, StabilizedMethodsTensorCopyData< dim >::strong_residual, NavierStokesScratchData< dim >::surface_tension, NavierStokesScratchData< dim >::surface_tension_gradient, and NavierStokesScratchData< dim >::temperature_gradients.

    diff --git a/doxygen/classGLSNavierStokesVOFAssemblerNonNewtonianCore.html b/doxygen/classGLSNavierStokesVOFAssemblerNonNewtonianCore.html index 39897176fe..be591f5ba1 100644 --- a/doxygen/classGLSNavierStokesVOFAssemblerNonNewtonianCore.html +++ b/doxygen/classGLSNavierStokesVOFAssemblerNonNewtonianCore.html @@ -215,7 +215,7 @@

    Definition at line 854 of file navier_stokes_vof_assemblers.cc.

    -

    References calculate_navier_stokes_gls_tau_steady(), calculate_navier_stokes_gls_tau_transient(), calculate_shear_rate_magnitude(), NavierStokesScratchData< dim >::cell_size, NavierStokesScratchData< dim >::density, PhysicalPropertiesManager::density_is_constant(), NavierStokesScratchData< dim >::div_phi_u, NavierStokesScratchData< dim >::dynamic_viscosity, NavierStokesScratchData< dim >::dynamic_viscosity_for_stabilization, NavierStokesScratchData< dim >::force, NavierStokesScratchData< dim >::grad_kinematic_viscosity_shear_rate, NavierStokesScratchData< dim >::grad_phi_p, NavierStokesScratchData< dim >::grad_phi_u, NavierStokesScratchData< dim >::JxW, NavierStokesScratchData< dim >::laplacian_phi_u, StabilizedMethodsTensorCopyData< dim >::local_matrix, NavierStokesScratchData< dim >::n_dofs, NavierStokesScratchData< dim >::n_q_points, NavierStokesScratchData< dim >::phi_p, NavierStokesScratchData< dim >::phi_u, NavierStokesScratchData< dim >::pressure_gradients, NavierStokesScratchData< dim >::pressure_scaling_factor, NavierStokesScratchData< dim >::properties_manager, shear_rate, Parameters::SimulationControl::steady, StabilizedMethodsTensorCopyData< dim >::strong_jacobian, StabilizedMethodsTensorCopyData< dim >::strong_residual, velocity, NavierStokesScratchData< dim >::velocity_gradients, NavierStokesScratchData< dim >::velocity_hessians, NavierStokesScratchData< dim >::velocity_laplacians, and NavierStokesScratchData< dim >::velocity_values.

    +

    References calculate_navier_stokes_gls_tau_steady(), calculate_navier_stokes_gls_tau_transient(), calculate_shear_rate_magnitude(), NavierStokesScratchData< dim >::cell_size, NavierStokesScratchData< dim >::density, PhysicalPropertiesManager::density_is_constant(), NavierStokesScratchData< dim >::div_phi_u, NavierStokesScratchData< dim >::dynamic_viscosity, NavierStokesScratchData< dim >::dynamic_viscosity_for_stabilization, NavierStokesScratchData< dim >::force, NavierStokesScratchData< dim >::grad_kinematic_viscosity_shear_rate, NavierStokesScratchData< dim >::grad_phi_p, NavierStokesScratchData< dim >::grad_phi_u, NavierStokesScratchData< dim >::JxW, NavierStokesScratchData< dim >::laplacian_phi_u, StabilizedMethodsTensorCopyData< dim >::local_matrix, NavierStokesScratchData< dim >::n_dofs, NavierStokesScratchData< dim >::n_q_points, NavierStokesScratchData< dim >::phi_p, NavierStokesScratchData< dim >::phi_u, NavierStokesScratchData< dim >::pressure_gradients, NavierStokesScratchData< dim >::pressure_scaling_factor, NavierStokesScratchData< dim >::properties_manager, shear_rate, Parameters::SimulationControl::steady, StabilizedMethodsTensorCopyData< dim >::strong_jacobian, StabilizedMethodsTensorCopyData< dim >::strong_residual, velocity, NavierStokesScratchData< dim >::velocity_gradients, NavierStokesScratchData< dim >::velocity_hessians, NavierStokesScratchData< dim >::velocity_laplacians, and NavierStokesScratchData< dim >::velocity_values.

    @@ -268,7 +268,7 @@

    Definition at line 1057 of file navier_stokes_vof_assemblers.cc.

    -

    References calculate_navier_stokes_gls_tau_steady(), calculate_navier_stokes_gls_tau_transient(), calculate_shear_rate_magnitude(), NavierStokesScratchData< dim >::cell_size, NavierStokesScratchData< dim >::density, PhysicalPropertiesManager::density_is_constant(), NavierStokesScratchData< dim >::div_phi_u, NavierStokesScratchData< dim >::dynamic_viscosity, NavierStokesScratchData< dim >::dynamic_viscosity_for_stabilization, NavierStokesScratchData< dim >::force, NavierStokesScratchData< dim >::grad_kinematic_viscosity_shear_rate, NavierStokesScratchData< dim >::grad_phi_p, NavierStokesScratchData< dim >::grad_phi_u, NavierStokesScratchData< dim >::JxW, StabilizedMethodsTensorCopyData< dim >::local_rhs, NavierStokesScratchData< dim >::n_dofs, NavierStokesScratchData< dim >::n_q_points, NavierStokesScratchData< dim >::phi_p, NavierStokesScratchData< dim >::phi_u, pressure, NavierStokesScratchData< dim >::pressure_gradients, NavierStokesScratchData< dim >::pressure_values, NavierStokesScratchData< dim >::properties_manager, shear_rate, Parameters::SimulationControl::steady, StabilizedMethodsTensorCopyData< dim >::strong_residual, velocity, NavierStokesScratchData< dim >::velocity_divergences, NavierStokesScratchData< dim >::velocity_gradients, NavierStokesScratchData< dim >::velocity_hessians, NavierStokesScratchData< dim >::velocity_laplacians, and NavierStokesScratchData< dim >::velocity_values.

    +

    References calculate_navier_stokes_gls_tau_steady(), calculate_navier_stokes_gls_tau_transient(), calculate_shear_rate_magnitude(), NavierStokesScratchData< dim >::cell_size, NavierStokesScratchData< dim >::density, PhysicalPropertiesManager::density_is_constant(), NavierStokesScratchData< dim >::div_phi_u, NavierStokesScratchData< dim >::dynamic_viscosity, NavierStokesScratchData< dim >::dynamic_viscosity_for_stabilization, NavierStokesScratchData< dim >::force, NavierStokesScratchData< dim >::grad_kinematic_viscosity_shear_rate, NavierStokesScratchData< dim >::grad_phi_p, NavierStokesScratchData< dim >::grad_phi_u, NavierStokesScratchData< dim >::JxW, StabilizedMethodsTensorCopyData< dim >::local_rhs, NavierStokesScratchData< dim >::n_dofs, NavierStokesScratchData< dim >::n_q_points, NavierStokesScratchData< dim >::phi_p, NavierStokesScratchData< dim >::phi_u, pressure, NavierStokesScratchData< dim >::pressure_gradients, NavierStokesScratchData< dim >::pressure_values, NavierStokesScratchData< dim >::properties_manager, shear_rate, Parameters::SimulationControl::steady, StabilizedMethodsTensorCopyData< dim >::strong_residual, velocity, NavierStokesScratchData< dim >::velocity_divergences, NavierStokesScratchData< dim >::velocity_gradients, NavierStokesScratchData< dim >::velocity_hessians, NavierStokesScratchData< dim >::velocity_laplacians, and NavierStokesScratchData< dim >::velocity_values.

    diff --git a/doxygen/classGLSSharpNavierStokesSolver-members.html b/doxygen/classGLSSharpNavierStokesSolver-members.html index d0d4a8daf3..67b8f157b2 100644 --- a/doxygen/classGLSSharpNavierStokesSolver-members.html +++ b/doxygen/classGLSSharpNavierStokesSolver-members.html @@ -107,160 +107,161 @@ check_cell_is_in_solid(const std::unordered_set< types::global_dof_index > &dofs_are_in_solid, const std::vector< types::global_dof_index > &local_dof_indices)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected check_existance_of_bc(BoundaryConditions::BoundaryType bc)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected check_whether_all_particles_are_sphere()GLSSharpNavierStokesSolver< dim >private - computing_timerNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - constrain_pressure(const bool &non_zero_constraints, const std::vector< types::global_dof_index > &local_dof_indices, AffineConstraints< double > &zero_constraints)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected - constrain_solid_cell_velocity_dofs(const bool &non_zero_constraints, const std::vector< types::global_dof_index > &local_dof_indices, AffineConstraints< double > &zero_constraints)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected - constrain_stasis_with_temperature(const DoFHandler< dim > *dof_handler_ht)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected - constrain_stasis_with_temperature_vof(const DoFHandler< dim > *dof_handler_vof, const DoFHandler< dim > *dof_handler_ht)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected - copy_local_matrix_to_global_matrix(const StabilizedMethodsTensorCopyData< dim > &copy_data) overrideGLSSharpNavierStokesSolver< dim >privatevirtual - copy_local_rhs_to_global_rhs(const StabilizedMethodsTensorCopyData< dim > &copy_data) overrideGLSSharpNavierStokesSolver< dim >privatevirtual - current_preconditioner_fill_levelGLSNavierStokesSolver< dim >private - cut_cells_mapGLSSharpNavierStokesSolver< dim >private - define_dynamic_zero_constraints()GLSNavierStokesSolver< dim >protected - define_non_zero_constraints()GLSNavierStokesSolver< dim >protected - define_particles()GLSSharpNavierStokesSolver< dim >private - define_zero_constraints()GLSNavierStokesSolver< dim >protected - dof_handlerNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - dof_overconstrainedGLSSharpNavierStokesSolver< dim >private - dof_with_more_then_one_particleGLSSharpNavierStokesSolver< dim >private - dynamic_flow_control()NavierStokesBase< dim, GlobalVectorType, IndexSet >protectedvirtual - dynamic_zero_constraintsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - enable_dynamic_zero_constraints_fd()NavierStokesBase< dim, GlobalVectorType, IndexSet >protectedvirtual - enstrophy_tableNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - error_tableNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - establish_solid_domain(const bool non_zero_constraints)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected - evaluation_pointNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - exact_solutionNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - face_quadratureNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - feNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - fe_values_temperatureNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - fe_values_vofNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - finish_simulation()NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected - finish_simulation_fd()NavierStokesBase< dim, GlobalVectorType, IndexSet >protected - finish_time_step()NavierStokesBase< dim, GlobalVectorType, IndexSet >protectedvirtual - finish_time_step_particles()GLSSharpNavierStokesSolver< dim >private - flag_dofs_connected_to_fluid(const std::vector< types::global_dof_index > &local_dof_indices, std::unordered_set< types::global_dof_index > &dofs_are_connected_to_fluid)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected - flag_dofs_in_solid(const std::vector< types::global_dof_index > &local_dof_indices, std::unordered_set< types::global_dof_index > &dofs_are_in_solid)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected - flow_controlNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - flow_rate_tableNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - force_on_ib()GLSSharpNavierStokesSolver< dim >private - forces_on_boundariesNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - forces_tablesNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - forcing_functionNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - generate_cut_cell_candidates(const typename DoFHandler< dim >::cell_iterator &cell, const unsigned int p_id)GLSSharpNavierStokesSolver< dim >private - generate_cut_cells_map()GLSSharpNavierStokesSolver< dim >private - get_cell_filtered_phase_fraction_values(const typename DoFHandler< dim >::active_cell_iterator &cell, const DoFHandler< dim > *dof_handler_vof, const TrilinosWrappers::MPI::Vector &filtered_phase_fraction_solution, std::vector< double > &local_filtered_phase_fraction_values)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected - get_cell_temperature_values(const typename DoFHandler< dim >::active_cell_iterator &cell, const DoFHandler< dim > *dof_handler_ht, const TrilinosWrappers::MPI::Vector &temperature_solution, std::vector< double > &local_temperature_values)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected - get_current_newton_iteration() constPhysicsSolver< VectorType >inline - get_current_residual() overrideGLSSharpNavierStokesSolver< dim >inlineprivatevirtual - get_evaluation_point() overrideNavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual - get_local_evaluation_point() overrideNavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual - get_newton_update() overrideNavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual - get_nonzero_constraints() overrideNavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual - get_present_solution() overrideNavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual - get_system_rhs() overrideNavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual - GLSNavierStokesSolver(SimulationParameters< dim > &nsparam)GLSNavierStokesSolver< dim > - GLSSharpNavierStokesSolver(CFDDEMSimulationParameters< dim > &nsparam)GLSSharpNavierStokesSolver< dim > - ib_demGLSSharpNavierStokesSolver< dim >private - ib_doneGLSSharpNavierStokesSolver< dim >private - ib_particles_pvdhandlerGLSSharpNavierStokesSolver< dim >private - ilu_preconditionerGLSNavierStokesSolver< dim >private - init_temporary_vector()NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected - initial_preconditioner_fill_levelGLSNavierStokesSolver< dim >private - integrate_particles()GLSSharpNavierStokesSolver< dim >private - iterate()NavierStokesBase< dim, GlobalVectorType, IndexSet >protectedvirtual - kinetic_energy_tableNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - levelset_gradient_postprocessorGLSSharpNavierStokesSolver< dim >private - levelset_postprocessorGLSSharpNavierStokesSolver< dim >private - load_particles_from_file()GLSSharpNavierStokesSolver< dim >private - local_dof_overconstrainedGLSSharpNavierStokesSolver< dim >private - local_evaluation_pointNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - locally_owned_dofsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - locally_relevant_dofsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - mappingNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - mesh_controllerNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - mpi_communicatorNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - multiphysicsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - n_mpi_processesNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - NavierStokesBase(SimulationParameters< dim > &nsparam)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected - newton_updateNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - non_linear_solverPhysicsSolver< VectorType >private - nonzero_constraintsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - number_quadrature_pointsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - optimized_generate_cut_cells_map()GLSSharpNavierStokesSolver< dim >private - output_field_hook(DataOut< dim > &data_out) overrideGLSSharpNavierStokesSolver< dim >privatevirtual - output_newton_update_norms(const unsigned int display_precision) overrideNavierStokesBase< dim, GlobalVectorType, IndexSet >protectedvirtual - overconstrained_fluid_cell_mapGLSSharpNavierStokesSolver< dim >private - particle_residualGLSSharpNavierStokesSolver< dim >private - particlesGLSSharpNavierStokesSolver< dim >private - pcoutPhysicsSolver< VectorType > - percolate_time_vectors_fd()NavierStokesBase< dim, GlobalVectorType, IndexSet >protectedvirtual - PhysicsSolver(const Parameters::NonLinearSolver non_linear_solver_parameters)PhysicsSolver< VectorType > - point_inside_cell(const typename DoFHandler< dim >::active_cell_iterator &cell, Point< dim > point)GLSSharpNavierStokesSolver< dim >private - postprocess(bool first_iteration)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual - postprocess_fd(bool firstIter) overrideGLSSharpNavierStokesSolver< dim >privatevirtual - postprocessing_forces(const GlobalVectorType &evaluation_point)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected - postprocessing_torques(const GlobalVectorType &evaluation_point)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected - present_solutionNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - pressure_drop_tableNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - pressure_fem_degreeNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - pressure_power_tableNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - previous_solutionsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - pvdhandlerNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - read_checkpoint() overrideGLSSharpNavierStokesSolver< dim >privatevirtual - refine_ib()GLSSharpNavierStokesSolver< dim >private - refine_mesh()NavierStokesBase< dim, GlobalVectorType, IndexSet >protectedvirtual - refine_mesh_kelly()NavierStokesBase< dim, GlobalVectorType, IndexSet >protected - refine_mesh_uniform()NavierStokesBase< dim, GlobalVectorType, IndexSet >protected - refinement_control(const bool initial_refinement)GLSSharpNavierStokesSolver< dim >private - rescale_pressure_dofs_in_newton_update()NavierStokesBase< dim, GlobalVectorType, IndexSet >protected - set_initial_condition(Parameters::InitialConditionType initial_condition_type, bool restart=false)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual - set_initial_condition_fd(Parameters::InitialConditionType initial_condition_type, bool restart=false) overrideGLSNavierStokesSolver< dim >protectedvirtual - set_nodal_values()NavierStokesBase< dim, GlobalVectorType, IndexSet >protected - setup_AMG()GLSNavierStokesSolver< dim >private - setup_assemblers() overrideGLSSharpNavierStokesSolver< dim >privatevirtual - setup_dofs()NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual - setup_dofs_fd() overrideGLSNavierStokesSolver< dim >protectedvirtual - setup_ILU()GLSNavierStokesSolver< dim >private - setup_preconditioner() overrideGLSNavierStokesSolver< dim >protectedvirtual - sharp_edge()GLSSharpNavierStokesSolver< dim >private - simulation_controlNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - simulation_parametersNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - solve() overrideGLSSharpNavierStokesSolver< dim >virtual - solve_linear_system(const bool initial_step, const bool renewed_matrix=true) overrideGLSNavierStokesSolver< dim >protectedvirtual - solve_non_linear_system(const bool first_iteration)PhysicsSolver< VectorType > - solve_system_BiCGStab(const bool initial_step, const double absolute_residual, const double relative_residual)GLSNavierStokesSolver< dim >private - solve_system_direct(const bool initial_step, const double absolute_residual, const double relative_residual)GLSNavierStokesSolver< dim >private - solve_system_GMRES(const bool initial_step, const double absolute_residual, const double relative_residual)GLSNavierStokesSolver< dim >private - some_particles_are_coupledGLSSharpNavierStokesSolver< dim >private - sparsity_patternGLSNavierStokesSolver< dim >private - stasis_constraint_structsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - system_matrixGLSNavierStokesSolver< dim >protected - system_rhsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - table_all_pGLSSharpNavierStokesSolver< dim >private - table_pGLSSharpNavierStokesSolver< dim >private - this_mpi_processNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - time_stepping_methodPhysicsSolver< VectorType > - torques_on_boundariesNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - torques_tablesNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - triangulationNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - update_boundary_conditions()GLSNavierStokesSolver< dim >protected - update_multiphysics_time_average_solution() overrideGLSNavierStokesSolver< dim >protectedvirtual - update_precalculations_for_ib()GLSSharpNavierStokesSolver< dim >private - velocity_fem_degreeNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - vertices_cell_mapping()GLSSharpNavierStokesSolver< dim >private - vertices_to_cellGLSSharpNavierStokesSolver< dim >private - viscous_dissipation_tableNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - write_checkpoint() overrideGLSSharpNavierStokesSolver< dim >privatevirtual - write_force_ib()GLSSharpNavierStokesSolver< dim >private - write_output_forces()NavierStokesBase< dim, GlobalVectorType, IndexSet >protected - write_output_results(const GlobalVectorType &solution)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected - write_output_torques()NavierStokesBase< dim, GlobalVectorType, IndexSet >protected - zero_constraintsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected - ~GLSNavierStokesSolver()GLSNavierStokesSolver< dim > - ~GLSSharpNavierStokesSolver()GLSSharpNavierStokesSolver< dim > - ~NavierStokesBase()NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual - ~PhysicsSolver()PhysicsSolver< VectorType >inlinevirtual + combined_shapesGLSSharpNavierStokesSolver< dim >private + computing_timerNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + constrain_pressure(const bool &non_zero_constraints, const std::vector< types::global_dof_index > &local_dof_indices, AffineConstraints< double > &zero_constraints)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected + constrain_solid_cell_velocity_dofs(const bool &non_zero_constraints, const std::vector< types::global_dof_index > &local_dof_indices, AffineConstraints< double > &zero_constraints)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected + constrain_stasis_with_temperature(const DoFHandler< dim > *dof_handler_ht)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected + constrain_stasis_with_temperature_vof(const DoFHandler< dim > *dof_handler_vof, const DoFHandler< dim > *dof_handler_ht)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected + copy_local_matrix_to_global_matrix(const StabilizedMethodsTensorCopyData< dim > &copy_data) overrideGLSSharpNavierStokesSolver< dim >privatevirtual + copy_local_rhs_to_global_rhs(const StabilizedMethodsTensorCopyData< dim > &copy_data) overrideGLSSharpNavierStokesSolver< dim >privatevirtual + current_preconditioner_fill_levelGLSNavierStokesSolver< dim >private + cut_cells_mapGLSSharpNavierStokesSolver< dim >private + define_dynamic_zero_constraints()GLSNavierStokesSolver< dim >protected + define_non_zero_constraints()GLSNavierStokesSolver< dim >protected + define_particles()GLSSharpNavierStokesSolver< dim >private + define_zero_constraints()GLSNavierStokesSolver< dim >protected + dof_handlerNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + dof_overconstrainedGLSSharpNavierStokesSolver< dim >private + dof_with_more_then_one_particleGLSSharpNavierStokesSolver< dim >private + dynamic_flow_control()NavierStokesBase< dim, GlobalVectorType, IndexSet >protectedvirtual + dynamic_zero_constraintsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + enable_dynamic_zero_constraints_fd()NavierStokesBase< dim, GlobalVectorType, IndexSet >protectedvirtual + enstrophy_tableNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + error_tableNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + establish_solid_domain(const bool non_zero_constraints)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected + evaluation_pointNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + exact_solutionNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + face_quadratureNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + feNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + fe_values_temperatureNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + fe_values_vofNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + finish_simulation()NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected + finish_simulation_fd()NavierStokesBase< dim, GlobalVectorType, IndexSet >protected + finish_time_step()NavierStokesBase< dim, GlobalVectorType, IndexSet >protectedvirtual + finish_time_step_particles()GLSSharpNavierStokesSolver< dim >private + flag_dofs_connected_to_fluid(const std::vector< types::global_dof_index > &local_dof_indices, std::unordered_set< types::global_dof_index > &dofs_are_connected_to_fluid)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected + flag_dofs_in_solid(const std::vector< types::global_dof_index > &local_dof_indices, std::unordered_set< types::global_dof_index > &dofs_are_in_solid)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected + flow_controlNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + flow_rate_tableNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + force_on_ib()GLSSharpNavierStokesSolver< dim >private + forces_on_boundariesNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + forces_tablesNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + forcing_functionNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + generate_cut_cell_candidates(const typename DoFHandler< dim >::cell_iterator &cell, const unsigned int p_id)GLSSharpNavierStokesSolver< dim >private + generate_cut_cells_map()GLSSharpNavierStokesSolver< dim >private + get_cell_filtered_phase_fraction_values(const typename DoFHandler< dim >::active_cell_iterator &cell, const DoFHandler< dim > *dof_handler_vof, const TrilinosWrappers::MPI::Vector &filtered_phase_fraction_solution, std::vector< double > &local_filtered_phase_fraction_values)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected + get_cell_temperature_values(const typename DoFHandler< dim >::active_cell_iterator &cell, const DoFHandler< dim > *dof_handler_ht, const TrilinosWrappers::MPI::Vector &temperature_solution, std::vector< double > &local_temperature_values)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected + get_current_newton_iteration() constPhysicsSolver< VectorType >inline + get_current_residual() overrideGLSSharpNavierStokesSolver< dim >inlineprivatevirtual + get_evaluation_point() overrideNavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual + get_local_evaluation_point() overrideNavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual + get_newton_update() overrideNavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual + get_nonzero_constraints() overrideNavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual + get_present_solution() overrideNavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual + get_system_rhs() overrideNavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual + GLSNavierStokesSolver(SimulationParameters< dim > &nsparam)GLSNavierStokesSolver< dim > + GLSSharpNavierStokesSolver(CFDDEMSimulationParameters< dim > &nsparam)GLSSharpNavierStokesSolver< dim > + ib_demGLSSharpNavierStokesSolver< dim >private + ib_doneGLSSharpNavierStokesSolver< dim >private + ib_particles_pvdhandlerGLSSharpNavierStokesSolver< dim >private + ilu_preconditionerGLSNavierStokesSolver< dim >private + init_temporary_vector()NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotected + initial_preconditioner_fill_levelGLSNavierStokesSolver< dim >private + integrate_particles()GLSSharpNavierStokesSolver< dim >private + iterate()NavierStokesBase< dim, GlobalVectorType, IndexSet >protectedvirtual + kinetic_energy_tableNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + levelset_gradient_postprocessorGLSSharpNavierStokesSolver< dim >private + levelset_postprocessorGLSSharpNavierStokesSolver< dim >private + load_particles_from_file()GLSSharpNavierStokesSolver< dim >private + local_dof_overconstrainedGLSSharpNavierStokesSolver< dim >private + local_evaluation_pointNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + locally_owned_dofsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + locally_relevant_dofsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + mappingNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + mesh_controllerNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + mpi_communicatorNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + multiphysicsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + n_mpi_processesNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + NavierStokesBase(SimulationParameters< dim > &nsparam)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected + newton_updateNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + non_linear_solverPhysicsSolver< VectorType >private + nonzero_constraintsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + number_quadrature_pointsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + optimized_generate_cut_cells_map()GLSSharpNavierStokesSolver< dim >private + output_field_hook(DataOut< dim > &data_out) overrideGLSSharpNavierStokesSolver< dim >privatevirtual + output_newton_update_norms(const unsigned int display_precision) overrideNavierStokesBase< dim, GlobalVectorType, IndexSet >protectedvirtual + overconstrained_fluid_cell_mapGLSSharpNavierStokesSolver< dim >private + particle_residualGLSSharpNavierStokesSolver< dim >private + particlesGLSSharpNavierStokesSolver< dim >private + pcoutPhysicsSolver< VectorType > + percolate_time_vectors_fd()NavierStokesBase< dim, GlobalVectorType, IndexSet >protectedvirtual + PhysicsSolver(const Parameters::NonLinearSolver non_linear_solver_parameters)PhysicsSolver< VectorType > + point_inside_cell(const typename DoFHandler< dim >::active_cell_iterator &cell, Point< dim > point)GLSSharpNavierStokesSolver< dim >private + postprocess(bool first_iteration)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual + postprocess_fd(bool firstIter) overrideGLSSharpNavierStokesSolver< dim >privatevirtual + postprocessing_forces(const GlobalVectorType &evaluation_point)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected + postprocessing_torques(const GlobalVectorType &evaluation_point)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected + present_solutionNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + pressure_drop_tableNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + pressure_fem_degreeNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + pressure_power_tableNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + previous_solutionsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + pvdhandlerNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + read_checkpoint() overrideGLSSharpNavierStokesSolver< dim >privatevirtual + refine_ib()GLSSharpNavierStokesSolver< dim >private + refine_mesh()NavierStokesBase< dim, GlobalVectorType, IndexSet >protectedvirtual + refine_mesh_kelly()NavierStokesBase< dim, GlobalVectorType, IndexSet >protected + refine_mesh_uniform()NavierStokesBase< dim, GlobalVectorType, IndexSet >protected + refinement_control(const bool initial_refinement)GLSSharpNavierStokesSolver< dim >private + rescale_pressure_dofs_in_newton_update()NavierStokesBase< dim, GlobalVectorType, IndexSet >protected + set_initial_condition(Parameters::InitialConditionType initial_condition_type, bool restart=false)NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual + set_initial_condition_fd(Parameters::InitialConditionType initial_condition_type, bool restart=false) overrideGLSNavierStokesSolver< dim >protectedvirtual + set_nodal_values()NavierStokesBase< dim, GlobalVectorType, IndexSet >protected + setup_AMG()GLSNavierStokesSolver< dim >private + setup_assemblers() overrideGLSSharpNavierStokesSolver< dim >privatevirtual + setup_dofs()NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual + setup_dofs_fd() overrideGLSNavierStokesSolver< dim >protectedvirtual + setup_ILU()GLSNavierStokesSolver< dim >private + setup_preconditioner() overrideGLSNavierStokesSolver< dim >protectedvirtual + sharp_edge()GLSSharpNavierStokesSolver< dim >private + simulation_controlNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + simulation_parametersNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + solve() overrideGLSSharpNavierStokesSolver< dim >virtual + solve_linear_system(const bool initial_step, const bool renewed_matrix=true) overrideGLSNavierStokesSolver< dim >protectedvirtual + solve_non_linear_system(const bool first_iteration)PhysicsSolver< VectorType > + solve_system_BiCGStab(const bool initial_step, const double absolute_residual, const double relative_residual)GLSNavierStokesSolver< dim >private + solve_system_direct(const bool initial_step, const double absolute_residual, const double relative_residual)GLSNavierStokesSolver< dim >private + solve_system_GMRES(const bool initial_step, const double absolute_residual, const double relative_residual)GLSNavierStokesSolver< dim >private + some_particles_are_coupledGLSSharpNavierStokesSolver< dim >private + sparsity_patternGLSNavierStokesSolver< dim >private + stasis_constraint_structsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + system_matrixGLSNavierStokesSolver< dim >protected + system_rhsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + table_all_pGLSSharpNavierStokesSolver< dim >private + table_pGLSSharpNavierStokesSolver< dim >private + this_mpi_processNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + time_stepping_methodPhysicsSolver< VectorType > + torques_on_boundariesNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + torques_tablesNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + triangulationNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + update_boundary_conditions()GLSNavierStokesSolver< dim >protected + update_multiphysics_time_average_solution() overrideGLSNavierStokesSolver< dim >protectedvirtual + update_precalculations_for_ib()GLSSharpNavierStokesSolver< dim >private + velocity_fem_degreeNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + vertices_cell_mapping()GLSSharpNavierStokesSolver< dim >private + vertices_to_cellGLSSharpNavierStokesSolver< dim >private + viscous_dissipation_tableNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + write_checkpoint() overrideGLSSharpNavierStokesSolver< dim >privatevirtual + write_force_ib()GLSSharpNavierStokesSolver< dim >private + write_output_forces()NavierStokesBase< dim, GlobalVectorType, IndexSet >protected + write_output_results(const GlobalVectorType &solution)NavierStokesBase< dim, GlobalVectorType, IndexSet >protected + write_output_torques()NavierStokesBase< dim, GlobalVectorType, IndexSet >protected + zero_constraintsNavierStokesBase< dim, GlobalVectorType, IndexSet >protected + ~GLSNavierStokesSolver()GLSNavierStokesSolver< dim > + ~GLSSharpNavierStokesSolver()GLSSharpNavierStokesSolver< dim > + ~NavierStokesBase()NavierStokesBase< dim, GlobalVectorType, IndexSet >inlineprotectedvirtual + ~PhysicsSolver()PhysicsSolver< VectorType >inlinevirtual
    diff --git a/doxygen/classGLSSharpNavierStokesSolver.html b/doxygen/classGLSSharpNavierStokesSolver.html index adaf0dbfc5..8ce831cbca 100644 --- a/doxygen/classGLSSharpNavierStokesSolver.html +++ b/doxygen/classGLSSharpNavierStokesSolver.html @@ -234,6 +234,8 @@   IBParticlesDEM< dim > ib_dem   +std::shared_ptr< Shape< dim > > combined_shapes +  std::shared_ptr< LevelsetPostprocessor< dim > > levelset_postprocessor   std::shared_ptr< LevelsetGradientPostprocessor< dim > > levelset_gradient_postprocessor @@ -571,7 +573,7 @@

    GLSNavierStokesSolver< dim >.

    -

    Definition at line 3990 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 3987 of file gls_sharp_navier_stokes.cc.

    References NavierStokesBase< dim, GlobalVectorType, IndexSet >::assemblers, GLSSharpNavierStokesSolver< dim >::assemblers_inside_ib, NavierStokesScratchData< dim >::calculate_physical_properties(), StabilizedMethodsTensorCopyData< dim >::cell_is_cut, StabilizedMethodsTensorCopyData< dim >::cell_is_local, GLSSharpNavierStokesSolver< dim >::cells_inside_map, GLSSharpNavierStokesSolver< dim >::cut_cells_map, NavierStokesBase< dim, GlobalVectorType, IndexSet >::evaluation_point, NavierStokesBase< dim, GlobalVectorType, IndexSet >::flow_control, NavierStokesBase< dim, GlobalVectorType, IndexSet >::forcing_function, StabilizedMethodsTensorCopyData< dim >::local_dof_indices, NavierStokesBase< dim, GlobalVectorType, IndexSet >::multiphysics, GLSSharpNavierStokesSolver< dim >::overconstrained_fluid_cell_map, NavierStokesBase< dim, GlobalVectorType, IndexSet >::previous_solutions, NavierStokesScratchData< dim >::reinit(), NavierStokesScratchData< dim >::reinit_vof(), StabilizedMethodsTensorCopyData< dim >::reset(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_parameters, NavierStokesBase< dim, GlobalVectorType, IndexSet >::triangulation, and VOF.

    @@ -631,7 +633,7 @@

    GLSNavierStokesSolver< dim >.

    -

    Definition at line 4083 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 4080 of file gls_sharp_navier_stokes.cc.

    References NavierStokesBase< dim, GlobalVectorType, IndexSet >::assemblers, GLSSharpNavierStokesSolver< dim >::assemblers_inside_ib, NavierStokesScratchData< dim >::calculate_physical_properties(), StabilizedMethodsTensorCopyData< dim >::cell_is_cut, StabilizedMethodsTensorCopyData< dim >::cell_is_local, GLSSharpNavierStokesSolver< dim >::cells_inside_map, GLSSharpNavierStokesSolver< dim >::cut_cells_map, NavierStokesBase< dim, GlobalVectorType, IndexSet >::evaluation_point, NavierStokesBase< dim, GlobalVectorType, IndexSet >::flow_control, NavierStokesBase< dim, GlobalVectorType, IndexSet >::forcing_function, StabilizedMethodsTensorCopyData< dim >::local_dof_indices, NavierStokesBase< dim, GlobalVectorType, IndexSet >::multiphysics, GLSSharpNavierStokesSolver< dim >::overconstrained_fluid_cell_map, NavierStokesBase< dim, GlobalVectorType, IndexSet >::previous_solutions, NavierStokesScratchData< dim >::reinit(), NavierStokesScratchData< dim >::reinit_vof(), StabilizedMethodsTensorCopyData< dim >::reset(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_parameters, NavierStokesBase< dim, GlobalVectorType, IndexSet >::triangulation, and VOF.

    @@ -798,7 +800,7 @@

    This function is slightly different from its standard GLS counterpart as the cells that are cut by an immersed boundary should not be taken into account in the error evaluation. See "computation domain" definition in: L. Barbeau, S. Étienne, C. Béguin & B. Blais, «Development of a high-order continuous Galerkin sharp-interface immersed boundary method and its application to incompressible flow problems,» Computers & Fluids, 2020, in press, ref. CAF-D-20-0077.

    -

    Definition at line 1802 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 1799 of file gls_sharp_navier_stokes.cc.

    References BoundaryConditions::function_weak, pressure, and NavierStokesFunctionDefined< dim >::value().

    @@ -1026,7 +1028,7 @@

    GLSNavierStokesSolver< dim >.

    -

    Definition at line 4067 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 4064 of file gls_sharp_navier_stokes.cc.

    References StabilizedMethodsTensorCopyData< dim >::cell_is_cut, StabilizedMethodsTensorCopyData< dim >::cell_is_local, StabilizedMethodsTensorCopyData< dim >::local_dof_indices, StabilizedMethodsTensorCopyData< dim >::local_matrix, and NavierStokesBase< dim, GlobalVectorType, IndexSet >::zero_constraints.

    @@ -1062,7 +1064,7 @@

    GLSNavierStokesSolver< dim >.

    -

    Definition at line 4160 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 4157 of file gls_sharp_navier_stokes.cc.

    References StabilizedMethodsTensorCopyData< dim >::cell_is_cut, StabilizedMethodsTensorCopyData< dim >::cell_is_local, StabilizedMethodsTensorCopyData< dim >::local_dof_indices, StabilizedMethodsTensorCopyData< dim >::local_rhs, and NavierStokesBase< dim, GlobalVectorType, IndexSet >::zero_constraints.

    @@ -1120,9 +1122,9 @@

    Definition at line 2760 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 2757 of file gls_sharp_navier_stokes.cc.

    -

    References GLSSharpNavierStokesSolver< dim >::Visualization_IB::build_patches(), GLSSharpNavierStokesSolver< dim >::ib_particles_pvdhandler, NavierStokesBase< dim, GlobalVectorType, IndexSet >::mpi_communicator, DEM::omega, GLSSharpNavierStokesSolver< dim >::particles, PhysicsSolver< VectorType >::pcout, NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_control, NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_parameters, GLSSharpNavierStokesSolver< dim >::some_particles_are_coupled, Parameters::SimulationControl::steady, GLSSharpNavierStokesSolver< dim >::table_all_p, GLSSharpNavierStokesSolver< dim >::table_p, tensor_nd_to_2d(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::this_mpi_process, velocity, and Parameters::verbose.

    +

    References GLSSharpNavierStokesSolver< dim >::Visualization_IB::build_patches(), GLSSharpNavierStokesSolver< dim >::ib_particles_pvdhandler, NavierStokesBase< dim, GlobalVectorType, IndexSet >::mpi_communicator, DEM::omega, GLSSharpNavierStokesSolver< dim >::particles, PhysicsSolver< VectorType >::pcout, NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_control, NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_parameters, GLSSharpNavierStokesSolver< dim >::some_particles_are_coupled, Parameters::SimulationControl::steady, GLSSharpNavierStokesSolver< dim >::table_all_p, GLSSharpNavierStokesSolver< dim >::table_p, tensor_nd_to_2d(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::this_mpi_process, velocity, and Parameters::verbose.

    @@ -1150,7 +1152,7 @@

    Definition at line 960 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 970 of file gls_sharp_navier_stokes.cc.

    References calculate_shear_rate_magnitude(), IBStencil< dim >::coefficients(), IBStencil< dim >::point_for_cell_detection(), pressure, shear_rate, IBStencil< dim >::support_points_for_interpolation(), temperature, and tensor_nd_to_3d().

    @@ -1285,7 +1287,7 @@

    Definition at line 2090 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 2087 of file gls_sharp_navier_stokes.cc.

    References LetheGridTools::find_cell_around_point_with_tree(), fluid_dynamics, DEM::mass, number_of_previous_solutions(), DEM::omega, Parameters::quiet, IBParticle< dim >::set_position(), shear_rate, temperature, and IBParticle< dim >::velocity_iter.

    @@ -1313,7 +1315,7 @@

    -

    Definition at line 4553 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 4550 of file gls_sharp_navier_stokes.cc.

    References NavierStokesBase< dim, GlobalVectorType, IndexSet >::computing_timer, fill_string_vectors_from_file(), GLSSharpNavierStokesSolver< dim >::particles, PhysicsSolver< VectorType >::pcout, and NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_parameters.

    @@ -1377,9 +1379,7 @@

    NavierStokesBase< dim, GlobalVectorType, IndexSet >.

    -

    Definition at line 1663 of file gls_sharp_navier_stokes.cc.

    - -

    References IBParticle< dim >::shape.

    +

    Definition at line 1673 of file gls_sharp_navier_stokes.cc.

    @@ -1460,7 +1460,7 @@

    NavierStokesBase< dim, GlobalVectorType, IndexSet >.

    -

    Definition at line 1737 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 1734 of file gls_sharp_navier_stokes.cc.

    References NavierStokesBase< dim, VectorType, DofsType >::postprocess_fd(), Parameters::SimulationControl::steady, and Parameters::verbose.

    @@ -1492,9 +1492,9 @@

    NavierStokesBase< dim, GlobalVectorType, IndexSet >.

    -

    Definition at line 4318 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 4315 of file gls_sharp_navier_stokes.cc.

    -

    References GLSSharpNavierStokesSolver< dim >::cfd_dem_parameters, GLSSharpNavierStokesSolver< dim >::check_whether_all_particles_are_sphere(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::computing_timer, NavierStokesBase< dim, GlobalVectorType, IndexSet >::dof_handler, fill_table_from_file(), fill_vectors_from_file(), GLSSharpNavierStokesSolver< dim >::ib_dem, GLSSharpNavierStokesSolver< dim >::ib_particles_pvdhandler, GLSSharpNavierStokesSolver< dim >::particles, PVDHandler::read(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::read_checkpoint(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_parameters, GLSSharpNavierStokesSolver< dim >::table_p, and GLSSharpNavierStokesSolver< dim >::update_precalculations_for_ib().

    +

    References GLSSharpNavierStokesSolver< dim >::cfd_dem_parameters, GLSSharpNavierStokesSolver< dim >::check_whether_all_particles_are_sphere(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::computing_timer, NavierStokesBase< dim, GlobalVectorType, IndexSet >::dof_handler, fill_table_from_file(), fill_vectors_from_file(), GLSSharpNavierStokesSolver< dim >::ib_dem, GLSSharpNavierStokesSolver< dim >::ib_particles_pvdhandler, GLSSharpNavierStokesSolver< dim >::particles, PVDHandler::read(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::read_checkpoint(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_parameters, GLSSharpNavierStokesSolver< dim >::table_p, and GLSSharpNavierStokesSolver< dim >::update_precalculations_for_ib().

    @@ -1523,7 +1523,7 @@

    -

    Definition at line 817 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 827 of file gls_sharp_navier_stokes.cc.

    @@ -1593,7 +1593,7 @@

    GLSNavierStokesSolver< dim >.

    -

    Definition at line 3867 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 3864 of file gls_sharp_navier_stokes.cc.

    References NavierStokesBase< dim, GlobalVectorType, IndexSet >::assemblers, GLSSharpNavierStokesSolver< dim >::assemblers_inside_ib, NavierStokesBase< dim, GlobalVectorType, IndexSet >::check_existance_of_bc(), BoundaryConditions::function_weak, is_bdf(), BoundaryConditions::outlet, BoundaryConditions::partial_slip, BoundaryConditions::pressure, NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_control, NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_parameters, and Parameters::VelocitySource::srf.

    @@ -1623,7 +1623,7 @@

    Definition at line 3108 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 3105 of file gls_sharp_navier_stokes.cc.

    References GLSSharpNavierStokesSolver< dim >::cell_cut(), IBStencil< dim >::coefficients(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::computing_timer, GLSSharpNavierStokesSolver< dim >::cut_cells_map, NavierStokesBase< dim, GlobalVectorType, IndexSet >::dof_handler, NavierStokesBase< dim, GlobalVectorType, IndexSet >::evaluation_point, NavierStokesBase< dim, GlobalVectorType, IndexSet >::fe, LetheGridTools::find_cell_around_point_with_tree(), GLSSharpNavierStokesSolver< dim >::ib_done, IBStencil< dim >::ib_velocity(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::locally_owned_dofs, NavierStokesBase< dim, GlobalVectorType, IndexSet >::mapping, NavierStokesBase< dim, GlobalVectorType, IndexSet >::nonzero_constraints, IBStencil< dim >::number_of_interpolation_support_points(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::number_quadrature_points, GLSSharpNavierStokesSolver< dim >::overconstrained_fluid_cell_map, GLSSharpNavierStokesSolver< dim >::particles, IBStencil< dim >::point_for_cell_detection(), pressure, NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_control, NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_parameters, Parameters::SimulationControl::steady, IBStencil< dim >::support_points_for_interpolation(), GLSNavierStokesSolver< dim >::system_matrix, NavierStokesBase< dim, GlobalVectorType, IndexSet >::system_rhs, NavierStokesBase< dim, GlobalVectorType, IndexSet >::triangulation, GLSSharpNavierStokesSolver< dim >::vertices_to_cell, and NavierStokesBase< dim, GlobalVectorType, IndexSet >::zero_constraints.

    @@ -1656,9 +1656,9 @@

    GLSNavierStokesSolver< dim >.

    -

    Definition at line 4854 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 4851 of file gls_sharp_navier_stokes.cc.

    -

    References GLSSharpNavierStokesSolver< dim >::all_spheres, GLSSharpNavierStokesSolver< dim >::define_particles(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::dof_handler, NavierStokesBase< dim, GlobalVectorType, IndexSet >::face_quadrature, NavierStokesBase< dim, GlobalVectorType, IndexSet >::finish_simulation(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::finish_time_step(), GLSSharpNavierStokesSolver< dim >::finish_time_step_particles(), GLSSharpNavierStokesSolver< dim >::force_on_ib(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::forcing_function, GLSSharpNavierStokesSolver< dim >::generate_cut_cells_map(), GLSSharpNavierStokesSolver< dim >::ib_dem, GLSSharpNavierStokesSolver< dim >::ib_done, GLSSharpNavierStokesSolver< dim >::integrate_particles(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::iterate(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::mapping, NavierStokesBase< dim, GlobalVectorType, IndexSet >::multiphysics, Parameters::MeshAdaptation::none, GLSSharpNavierStokesSolver< dim >::optimized_generate_cut_cells_map(), GLSSharpNavierStokesSolver< dim >::particles, PhysicsSolver< VectorType >::pcout, GLSSharpNavierStokesSolver< dim >::postprocess_fd(), read_mesh_and_manifolds(), GLSSharpNavierStokesSolver< dim >::refinement_control(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::set_initial_condition(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::setup_dofs(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_control, NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_parameters, GLSSharpNavierStokesSolver< dim >::some_particles_are_coupled, NavierStokesBase< dim, GlobalVectorType, IndexSet >::triangulation, GLSNavierStokesSolver< dim >::update_boundary_conditions(), GLSNavierStokesSolver< dim >::update_multiphysics_time_average_solution(), GLSSharpNavierStokesSolver< dim >::update_precalculations_for_ib(), GLSSharpNavierStokesSolver< dim >::vertices_cell_mapping(), and GLSSharpNavierStokesSolver< dim >::write_force_ib().

    +

    References GLSSharpNavierStokesSolver< dim >::all_spheres, GLSSharpNavierStokesSolver< dim >::define_particles(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::dof_handler, NavierStokesBase< dim, GlobalVectorType, IndexSet >::face_quadrature, NavierStokesBase< dim, GlobalVectorType, IndexSet >::finish_simulation(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::finish_time_step(), GLSSharpNavierStokesSolver< dim >::finish_time_step_particles(), GLSSharpNavierStokesSolver< dim >::force_on_ib(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::forcing_function, GLSSharpNavierStokesSolver< dim >::generate_cut_cells_map(), GLSSharpNavierStokesSolver< dim >::ib_dem, GLSSharpNavierStokesSolver< dim >::ib_done, GLSSharpNavierStokesSolver< dim >::integrate_particles(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::iterate(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::mapping, NavierStokesBase< dim, GlobalVectorType, IndexSet >::multiphysics, Parameters::MeshAdaptation::none, GLSSharpNavierStokesSolver< dim >::optimized_generate_cut_cells_map(), GLSSharpNavierStokesSolver< dim >::particles, PhysicsSolver< VectorType >::pcout, NavierStokesBase< dim, GlobalVectorType, IndexSet >::postprocess(), read_mesh_and_manifolds(), GLSSharpNavierStokesSolver< dim >::refinement_control(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::set_initial_condition(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::setup_dofs(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_control, NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_parameters, GLSSharpNavierStokesSolver< dim >::some_particles_are_coupled, NavierStokesBase< dim, GlobalVectorType, IndexSet >::triangulation, GLSNavierStokesSolver< dim >::update_boundary_conditions(), GLSNavierStokesSolver< dim >::update_multiphysics_time_average_solution(), GLSSharpNavierStokesSolver< dim >::update_precalculations_for_ib(), GLSSharpNavierStokesSolver< dim >::vertices_cell_mapping(), and GLSSharpNavierStokesSolver< dim >::write_force_ib().

    @@ -1686,7 +1686,7 @@

    This function updates the precalculations for every immersed particle.

    -

    Definition at line 4840 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 4837 of file gls_sharp_navier_stokes.cc.

    References NavierStokesBase< dim, GlobalVectorType, IndexSet >::computing_timer, NavierStokesBase< dim, GlobalVectorType, IndexSet >::dof_handler, and GLSSharpNavierStokesSolver< dim >::particles.

    @@ -1755,7 +1755,7 @@

    NavierStokesBase< dim, GlobalVectorType, IndexSet >.

    -

    Definition at line 4175 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 4172 of file gls_sharp_navier_stokes.cc.

    References GLSSharpNavierStokesSolver< dim >::ib_particles_pvdhandler, NavierStokesBase< dim, GlobalVectorType, IndexSet >::mpi_communicator, GLSSharpNavierStokesSolver< dim >::particles, NavierStokesBase< dim, GlobalVectorType, IndexSet >::pvdhandler, PVDHandler::save(), NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_control, NavierStokesBase< dim, GlobalVectorType, IndexSet >::simulation_parameters, and NavierStokesBase< dim, GlobalVectorType, IndexSet >::write_checkpoint().

    @@ -1785,7 +1785,7 @@

    Definition at line 1635 of file gls_sharp_navier_stokes.cc.

    +

    Definition at line 1645 of file gls_sharp_navier_stokes.cc.

    @@ -1893,6 +1893,32 @@

    Definition at line 575 of file gls_sharp_navier_stokes.h.

    + + + +

    ◆ combined_shapes

    + +
    +
    +
    +template<int dim>
    + + + + + +
    + + + + +
    std::shared_ptr<Shape<dim> > GLSSharpNavierStokesSolver< dim >::combined_shapes
    +     		+private
    +
    + +

    Definition at line 644 of file gls_sharp_navier_stokes.h.

    +
    @@ -2073,7 +2099,7 @@

    -

    Definition at line 647 of file gls_sharp_navier_stokes.h.

    +

    Definition at line 650 of file gls_sharp_navier_stokes.h.

    @@ -2099,7 +2125,7 @@

    -

    Definition at line 645 of file gls_sharp_navier_stokes.h.

    +

    Definition at line 648 of file gls_sharp_navier_stokes.h.

    diff --git a/doxygen/classGLSVansAssemblerBeetstra.html b/doxygen/classGLSVansAssemblerBeetstra.html index cfa520e821..95f49231cf 100644 --- a/doxygen/classGLSVansAssemblerBeetstra.html +++ b/doxygen/classGLSVansAssemblerBeetstra.html @@ -190,7 +190,7 @@

    Definition at line 1194 of file vans_assemblers.cc.

    -

    References NavierStokesScratchData< dim >::beta_drag, NavierStokesScratchData< dim >::cell_void_fraction, NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::get_kinematic_viscosity_scale(), PhysicalPropertiesManager::is_non_newtonian(), NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::Re_particle.

    +

    References NavierStokesScratchData< dim >::beta_drag, NavierStokesScratchData< dim >::cell_void_fraction, NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::get_kinematic_viscosity_scale(), PhysicalPropertiesManager::is_non_newtonian(), NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::Re_particle.

    diff --git a/doxygen/classGLSVansAssemblerBuoyancy.html b/doxygen/classGLSVansAssemblerBuoyancy.html index 8261c6c231..d47ab1c5a3 100644 --- a/doxygen/classGLSVansAssemblerBuoyancy.html +++ b/doxygen/classGLSVansAssemblerBuoyancy.html @@ -187,7 +187,7 @@

    Definition at line 1768 of file vans_assemblers.cc.

    -

    References PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, PhysicalPropertiesManager::get_density_scale(), NavierStokesScratchData< dim >::pic, and NavierStokesScratchData< dim >::properties_manager.

    +

    References PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, PhysicalPropertiesManager::get_density_scale(), NavierStokesScratchData< dim >::pic, and NavierStokesScratchData< dim >::properties_manager.

    diff --git a/doxygen/classGLSVansAssemblerDallavalle.html b/doxygen/classGLSVansAssemblerDallavalle.html index 5f9662d435..ca3d6ca2f2 100644 --- a/doxygen/classGLSVansAssemblerDallavalle.html +++ b/doxygen/classGLSVansAssemblerDallavalle.html @@ -187,7 +187,7 @@

    Definition at line 1043 of file vans_assemblers.cc.

    -

    References NavierStokesScratchData< dim >::beta_drag, NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::is_non_newtonian(), NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::Re_particle.

    +

    References NavierStokesScratchData< dim >::beta_drag, NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::is_non_newtonian(), NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::Re_particle.

    diff --git a/doxygen/classGLSVansAssemblerDiFelice.html b/doxygen/classGLSVansAssemblerDiFelice.html index f12ee6906b..ca80719772 100644 --- a/doxygen/classGLSVansAssemblerDiFelice.html +++ b/doxygen/classGLSVansAssemblerDiFelice.html @@ -187,7 +187,7 @@

    Definition at line 898 of file vans_assemblers.cc.

    -

    References NavierStokesScratchData< dim >::beta_drag, NavierStokesScratchData< dim >::cell_void_fraction, NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::is_non_newtonian(), NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::Re_particle.

    +

    References NavierStokesScratchData< dim >::beta_drag, NavierStokesScratchData< dim >::cell_void_fraction, NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::is_non_newtonian(), NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::Re_particle.

    diff --git a/doxygen/classGLSVansAssemblerGidaspow.html b/doxygen/classGLSVansAssemblerGidaspow.html index 98885355ea..df92b36c40 100644 --- a/doxygen/classGLSVansAssemblerGidaspow.html +++ b/doxygen/classGLSVansAssemblerGidaspow.html @@ -187,7 +187,7 @@

    Definition at line 1272 of file vans_assemblers.cc.

    -

    References NavierStokesScratchData< dim >::beta_drag, NavierStokesScratchData< dim >::cell_void_fraction, NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::get_kinematic_viscosity_scale(), PhysicalPropertiesManager::is_non_newtonian(), DEM::mass, NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::Re_particle.

    +

    References NavierStokesScratchData< dim >::beta_drag, NavierStokesScratchData< dim >::cell_void_fraction, NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::get_kinematic_viscosity_scale(), PhysicalPropertiesManager::is_non_newtonian(), DEM::mass, NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::Re_particle.

    diff --git a/doxygen/classGLSVansAssemblerKochHill.html b/doxygen/classGLSVansAssemblerKochHill.html index bce70c2861..63ea041103 100644 --- a/doxygen/classGLSVansAssemblerKochHill.html +++ b/doxygen/classGLSVansAssemblerKochHill.html @@ -186,7 +186,7 @@

    Definition at line 1105 of file vans_assemblers.cc.

    -

    References NavierStokesScratchData< dim >::beta_drag, NavierStokesScratchData< dim >::cell_void_fraction, NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::get_kinematic_viscosity_scale(), PhysicalPropertiesManager::is_non_newtonian(), NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::Re_particle.

    +

    References NavierStokesScratchData< dim >::beta_drag, NavierStokesScratchData< dim >::cell_void_fraction, NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::get_kinematic_viscosity_scale(), PhysicalPropertiesManager::is_non_newtonian(), NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::Re_particle.

    diff --git a/doxygen/classGLSVansAssemblerMagnus.html b/doxygen/classGLSVansAssemblerMagnus.html index f26968418b..0aa194f1b3 100644 --- a/doxygen/classGLSVansAssemblerMagnus.html +++ b/doxygen/classGLSVansAssemblerMagnus.html @@ -189,7 +189,7 @@

    Definition at line 1517 of file vans_assemblers.cc.

    -

    References NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, PhysicalPropertiesManager::get_density_scale(), DEM::omega_x, DEM::omega_z, NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, NavierStokesScratchData< dim >::Re_particle, and NavierStokesScratchData< dim >::undisturbed_flow_force.

    +

    References NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, PhysicalPropertiesManager::get_density_scale(), DEM::omega_x, DEM::omega_z, NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, NavierStokesScratchData< dim >::Re_particle, and NavierStokesScratchData< dim >::undisturbed_flow_force.

    diff --git a/doxygen/classGLSVansAssemblerPressureForce.html b/doxygen/classGLSVansAssemblerPressureForce.html index 5f6e5f0034..a953159d01 100644 --- a/doxygen/classGLSVansAssemblerPressureForce.html +++ b/doxygen/classGLSVansAssemblerPressureForce.html @@ -187,7 +187,7 @@

    Definition at line 1805 of file vans_assemblers.cc.

    -

    References NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_pressure_gradients_at_particle_location, PhysicalPropertiesManager::get_density_scale(), Parameters::modelB, NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::undisturbed_flow_force.

    +

    References NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_pressure_gradients_at_particle_location, PhysicalPropertiesManager::get_density_scale(), Parameters::modelB, NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::undisturbed_flow_force.

    diff --git a/doxygen/classGLSVansAssemblerRong.html b/doxygen/classGLSVansAssemblerRong.html index d67ff30539..040e273967 100644 --- a/doxygen/classGLSVansAssemblerRong.html +++ b/doxygen/classGLSVansAssemblerRong.html @@ -187,7 +187,7 @@

    Definition at line 974 of file vans_assemblers.cc.

    -

    References NavierStokesScratchData< dim >::beta_drag, NavierStokesScratchData< dim >::cell_void_fraction, NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::is_non_newtonian(), NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::Re_particle.

    +

    References NavierStokesScratchData< dim >::beta_drag, NavierStokesScratchData< dim >::cell_void_fraction, NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::is_non_newtonian(), NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::Re_particle.

    diff --git a/doxygen/classGLSVansAssemblerSaffmanMei.html b/doxygen/classGLSVansAssemblerSaffmanMei.html index 3d2318e471..3344c23ac6 100644 --- a/doxygen/classGLSVansAssemblerSaffmanMei.html +++ b/doxygen/classGLSVansAssemblerSaffmanMei.html @@ -190,7 +190,7 @@

    Definition at line 1371 of file vans_assemblers.cc.

    -

    References NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, NavierStokesScratchData< dim >::fluid_velocity_curls_at_particle_location_2d, NavierStokesScratchData< dim >::fluid_velocity_curls_at_particle_location_3d, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::get_kinematic_viscosity_scale(), PhysicalPropertiesManager::is_non_newtonian(), NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, NavierStokesScratchData< dim >::Re_particle, and NavierStokesScratchData< dim >::undisturbed_flow_force.

    +

    References NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_particle_relative_velocity_at_particle_location, NavierStokesScratchData< dim >::fluid_velocity_curls_at_particle_location_2d, NavierStokesScratchData< dim >::fluid_velocity_curls_at_particle_location_3d, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::get_kinematic_viscosity_scale(), PhysicalPropertiesManager::is_non_newtonian(), NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, NavierStokesScratchData< dim >::Re_particle, and NavierStokesScratchData< dim >::undisturbed_flow_force.

    diff --git a/doxygen/classGLSVansAssemblerShearForce.html b/doxygen/classGLSVansAssemblerShearForce.html index 45cf91cf2a..e39c360cb6 100644 --- a/doxygen/classGLSVansAssemblerShearForce.html +++ b/doxygen/classGLSVansAssemblerShearForce.html @@ -187,7 +187,7 @@

    Definition at line 1860 of file vans_assemblers.cc.

    -

    References NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_velocity_laplacian_at_particle_location, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::get_kinematic_viscosity_scale(), PhysicalPropertiesManager::is_non_newtonian(), Parameters::modelB, NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::undisturbed_flow_force.

    +

    References NavierStokesScratchData< dim >::cell_volume, PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_force_x, NavierStokesScratchData< dim >::fluid_velocity_laplacian_at_particle_location, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::get_kinematic_viscosity_scale(), PhysicalPropertiesManager::is_non_newtonian(), Parameters::modelB, NavierStokesScratchData< dim >::pic, NavierStokesScratchData< dim >::properties_manager, and NavierStokesScratchData< dim >::undisturbed_flow_force.

    diff --git a/doxygen/classGLSVansAssemblerViscousTorque.html b/doxygen/classGLSVansAssemblerViscousTorque.html index fd23678c96..2a5934df0b 100644 --- a/doxygen/classGLSVansAssemblerViscousTorque.html +++ b/doxygen/classGLSVansAssemblerViscousTorque.html @@ -188,7 +188,7 @@

    Definition at line 1665 of file vans_assemblers.cc.

    -

    References PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_torque_x, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::get_kinematic_viscosity_scale(), PhysicalPropertiesManager::is_non_newtonian(), DEM::omega_x, NavierStokesScratchData< dim >::pic, and NavierStokesScratchData< dim >::properties_manager.

    +

    References PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_torque_x, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::get_kinematic_viscosity_scale(), PhysicalPropertiesManager::is_non_newtonian(), DEM::omega_x, NavierStokesScratchData< dim >::pic, and NavierStokesScratchData< dim >::properties_manager.

    diff --git a/doxygen/classGLSVansAssemblerVorticalTorque.html b/doxygen/classGLSVansAssemblerVorticalTorque.html index fe5640436e..eb3e256eaa 100644 --- a/doxygen/classGLSVansAssemblerVorticalTorque.html +++ b/doxygen/classGLSVansAssemblerVorticalTorque.html @@ -188,7 +188,7 @@

    Definition at line 1715 of file vans_assemblers.cc.

    -

    References PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_torque_x, NavierStokesScratchData< dim >::fluid_velocity_curls_at_particle_location_3d, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::get_kinematic_viscosity_scale(), PhysicalPropertiesManager::is_non_newtonian(), NavierStokesScratchData< dim >::pic, and NavierStokesScratchData< dim >::properties_manager.

    +

    References PhysicalPropertiesManager::density_is_constant(), DEM::dp, DEM::fem_torque_x, NavierStokesScratchData< dim >::fluid_velocity_curls_at_particle_location_3d, PhysicalPropertiesManager::get_density_scale(), PhysicalPropertiesManager::get_kinematic_viscosity_scale(), PhysicalPropertiesManager::is_non_newtonian(), NavierStokesScratchData< dim >::pic, and NavierStokesScratchData< dim >::properties_manager.

    diff --git a/doxygen/classHeatTransferScratchData.html b/doxygen/classHeatTransferScratchData.html index 77a5526c12..c0adc26a56 100644 --- a/doxygen/classHeatTransferScratchData.html +++ b/doxygen/classHeatTransferScratchData.html @@ -409,7 +409,7 @@

    Definition at line 144 of file heat_transfer_scratch_data.cc.

    -

    References calculate_point_property(), calculate_shear_rate_magnitude(), pressure, set_field_vector(), shear_rate, temperature, temperature_p1, and temperature_p2.

    +

    References calculate_point_property(), calculate_shear_rate_magnitude(), pressure, set_field_vector(), shear_rate, temperature, temperature_p1, and temperature_p2.

    diff --git a/doxygen/classMFNavierStokesPreconditionGMG.html b/doxygen/classMFNavierStokesPreconditionGMG.html index ed04ab1a78..3d290ee0f6 100644 --- a/doxygen/classMFNavierStokesPreconditionGMG.html +++ b/doxygen/classMFNavierStokesPreconditionGMG.html @@ -490,7 +490,7 @@

    Definition at line 211 of file mf_navier_stokes.cc.

    -

    References SimulationParameters< dim >::boundary_conditions, MFNavierStokesPreconditionGMG< dim >::coarse_grid_triangulations, MFNavierStokesPreconditionGMG< dim >::dof_handler, MFNavierStokesPreconditionGMG< dim >::dof_handler_fe_q_iso_q1, MFNavierStokesPreconditionGMG< dim >::dof_handlers, Parameters::extra_verbose, fluid_dynamics, BoundaryConditions::function_weak, Parameters::LinearSolver::gcmg, PhysicalPropertiesManager::get_kinematic_viscosity_scale(), SimulationParameters< dim >::linear_solver, MFNavierStokesPreconditionGMG< dim >::ls_mg_interface_in, MFNavierStokesPreconditionGMG< dim >::ls_mg_operators, Parameters::LinearSolver::lsmg, MFNavierStokesPreconditionGMG< dim >::maxlevel, MFNavierStokesPreconditionGMG< dim >::mg_constrained_dofs, MFNavierStokesPreconditionGMG< dim >::mg_operators, MFNavierStokesPreconditionGMG< dim >::mg_setup_timer, MFNavierStokesPreconditionGMG< dim >::mg_transfer_gc, MFNavierStokesPreconditionGMG< dim >::mg_transfer_ls, MFNavierStokesPreconditionGMG< dim >::minlevel, BoundaryConditions::outlet, BoundaryConditions::partial_slip, MFNavierStokesPreconditionGMG< dim >::pcout, BoundaryConditions::periodic, SimulationParameters< dim >::physical_properties_manager, BoundaryConditions::pressure, pressure, Parameters::quiet, BoundaryConditions::slip, Parameters::Stabilization::stabilization, SimulationParameters< dim >::stabilization, and MFNavierStokesPreconditionGMG< dim >::transfers.

    +

    References SimulationParameters< dim >::boundary_conditions, MFNavierStokesPreconditionGMG< dim >::coarse_grid_triangulations, MFNavierStokesPreconditionGMG< dim >::dof_handler, MFNavierStokesPreconditionGMG< dim >::dof_handler_fe_q_iso_q1, MFNavierStokesPreconditionGMG< dim >::dof_handlers, Parameters::extra_verbose, fluid_dynamics, BoundaryConditions::function_weak, Parameters::LinearSolver::gcmg, PhysicalPropertiesManager::get_kinematic_viscosity_scale(), SimulationParameters< dim >::linear_solver, MFNavierStokesPreconditionGMG< dim >::ls_mg_interface_in, MFNavierStokesPreconditionGMG< dim >::ls_mg_operators, Parameters::LinearSolver::lsmg, MFNavierStokesPreconditionGMG< dim >::maxlevel, MFNavierStokesPreconditionGMG< dim >::mg_constrained_dofs, MFNavierStokesPreconditionGMG< dim >::mg_operators, MFNavierStokesPreconditionGMG< dim >::mg_setup_timer, MFNavierStokesPreconditionGMG< dim >::mg_transfer_gc, MFNavierStokesPreconditionGMG< dim >::mg_transfer_ls, MFNavierStokesPreconditionGMG< dim >::minlevel, BoundaryConditions::outlet, BoundaryConditions::partial_slip, MFNavierStokesPreconditionGMG< dim >::pcout, BoundaryConditions::periodic, SimulationParameters< dim >::physical_properties_manager, BoundaryConditions::pressure, pressure, Parameters::quiet, BoundaryConditions::slip, Parameters::Stabilization::stabilization, SimulationParameters< dim >::stabilization, and MFNavierStokesPreconditionGMG< dim >::transfers.

    diff --git a/doxygen/classMFNavierStokesSolver.html b/doxygen/classMFNavierStokesSolver.html index 197d37eb30..d9f8031737 100644 --- a/doxygen/classMFNavierStokesSolver.html +++ b/doxygen/classMFNavierStokesSolver.html @@ -459,7 +459,7 @@

    Definition at line 1451 of file mf_navier_stokes.cc.

    -

    References NavierStokesBase< dim, LinearAlgebra::distributed::Vector< double >, IndexSet >::fe, SimulationParameters< dim >::fem_parameters, NavierStokesBase< dim, LinearAlgebra::distributed::Vector< double >, IndexSet >::forcing_function, Parameters::FEM::pressure_order, NavierStokesBase< dim, LinearAlgebra::distributed::Vector< double >, IndexSet >::simulation_parameters, MFNavierStokesSolver< dim >::system_operator, and Parameters::FEM::velocity_order.

    +

    References NavierStokesBase< dim, LinearAlgebra::distributed::Vector< double >, IndexSet >::fe, SimulationParameters< dim >::fem_parameters, NavierStokesBase< dim, LinearAlgebra::distributed::Vector< double >, IndexSet >::forcing_function, Parameters::FEM::pressure_order, NavierStokesBase< dim, LinearAlgebra::distributed::Vector< double >, IndexSet >::simulation_parameters, MFNavierStokesSolver< dim >::system_operator, and Parameters::FEM::velocity_order.

    diff --git a/doxygen/classMobilityCahnHilliardModel.html b/doxygen/classMobilityCahnHilliardModel.html index 929d829074..0c414f8105 100644 --- a/doxygen/classMobilityCahnHilliardModel.html +++ b/doxygen/classMobilityCahnHilliardModel.html @@ -225,7 +225,7 @@

    Definition at line 20 of file mobility_cahn_hilliard_model.cc.

    -

    References Parameters::MobilityCahnHilliardParameters::mobility_cahn_hilliard_constant, Parameters::MaterialInteractions::mobility_cahn_hilliard_model, Parameters::MaterialInteractions::mobility_cahn_hilliard_parameters, and Parameters::MaterialInteractions::quartic.

    +

    References Parameters::MobilityCahnHilliardParameters::mobility_cahn_hilliard_constant, Parameters::MaterialInteractions::mobility_cahn_hilliard_model, Parameters::MaterialInteractions::mobility_cahn_hilliard_parameters, and Parameters::MaterialInteractions::quartic.

    diff --git a/doxygen/classMultiphysicsInterface-members.html b/doxygen/classMultiphysicsInterface-members.html index 0c556817cb..d84b74eefa 100644 --- a/doxygen/classMultiphysicsInterface-members.html +++ b/doxygen/classMultiphysicsInterface-members.html @@ -98,13 +98,15 @@ get_curvature_solution()MultiphysicsInterface< dim > get_dof_handler(const PhysicsID physics_id)MultiphysicsInterface< dim >inline get_filtered_solution(const PhysicsID physics_id)MultiphysicsInterface< dim >inline - get_previous_solutions(const PhysicsID physics_id)MultiphysicsInterface< dim >inline - get_projected_phase_fraction_gradient_dof_handler()MultiphysicsInterface< dim > - get_projected_phase_fraction_gradient_solution()MultiphysicsInterface< dim > - get_reynolds_stress_solution(const PhysicsID physics_id)MultiphysicsInterface< dim >inline - get_solids(const int number_solids)MultiphysicsInterface< dim >inline - get_solution(const PhysicsID physics_id)MultiphysicsInterface< dim >inline - get_time_average_solution(const PhysicsID physics_id)MultiphysicsInterface< dim >inline + get_immersed_solid_signed_distance_function()MultiphysicsInterface< dim > + get_previous_solutions(const PhysicsID physics_id)MultiphysicsInterface< dim >inline + get_projected_phase_fraction_gradient_dof_handler()MultiphysicsInterface< dim > + get_projected_phase_fraction_gradient_solution()MultiphysicsInterface< dim > + get_reynolds_stress_solution(const PhysicsID physics_id)MultiphysicsInterface< dim >inline + get_solids(const int number_solids)MultiphysicsInterface< dim >inline + get_solution(const PhysicsID physics_id)MultiphysicsInterface< dim >inline + get_time_average_solution(const PhysicsID physics_id)MultiphysicsInterface< dim >inline + immersed_solid_signed_distance_functionMultiphysicsInterface< dim >private inspect_multiphysics_models_dependencies(const SimulationParameters< dim > &nsparam)MultiphysicsInterface< dim >private multiphysics_parametersMultiphysicsInterface< dim >private MultiphysicsInterface(const SimulationParameters< dim > &nsparam, std::shared_ptr< parallel::DistributedTriangulationBase< dim >> p_triangulation, std::shared_ptr< SimulationControl > p_simulation_control, ConditionalOStream &p_pcout)MultiphysicsInterface< dim > @@ -127,23 +129,24 @@ set_block_time_average_solution(const PhysicsID physics_id, GlobalBlockVectorType *solution_vector)MultiphysicsInterface< dim >inline set_dof_handler(const PhysicsID physics_id, DoFHandler< dim > *dof_handler)MultiphysicsInterface< dim >inline set_filtered_solution(const PhysicsID physics_id, GlobalVectorType *filtered_solution_vector)MultiphysicsInterface< dim >inline - set_initial_conditions()MultiphysicsInterface< dim >inline - set_previous_block_solutions(const PhysicsID physics_id, std::vector< GlobalBlockVectorType > *previous_solutions_vector)MultiphysicsInterface< dim >inline - set_previous_solutions(const PhysicsID physics_id, std::vector< GlobalVectorType > *previous_solutions_vector)MultiphysicsInterface< dim >inline - set_reynolds_stress_solutions(const PhysicsID physics_id, GlobalVectorType *solution_vector)MultiphysicsInterface< dim >inline - set_solid(std::vector< std::shared_ptr< SolidBase< dim, dim >>> *solids_input)MultiphysicsInterface< dim >inline - set_solution(const PhysicsID physics_id, GlobalVectorType *solution_vector)MultiphysicsInterface< dim >inline - set_time_average_solution(const PhysicsID physics_id, GlobalVectorType *solution_vector)MultiphysicsInterface< dim >inline - setup_dofs()MultiphysicsInterface< dim >inline - solidsMultiphysicsInterface< dim >private - solve(const bool fluid_dynamics_has_been_solved, const Parameters::SimulationControl::TimeSteppingMethod time_stepping_method)MultiphysicsInterface< dim >inline - solve_block_physics(const PhysicsID physics_id, const Parameters::SimulationControl::TimeSteppingMethod time_stepping_method)MultiphysicsInterface< dim >inline - solve_linear_system(const PhysicsID physics_id, const bool initial_step, const bool renewed_matrix=true)MultiphysicsInterface< dim >inline - solve_physics(const PhysicsID physics_id, const Parameters::SimulationControl::TimeSteppingMethod time_stepping_method)MultiphysicsInterface< dim >inline - solve_pre_fluidMultiphysicsInterface< dim >private - update_boundary_conditions()MultiphysicsInterface< dim >inline - verbosityMultiphysicsInterface< dim >private - write_checkpoint()MultiphysicsInterface< dim >inlinevirtual + set_immersed_solid_signed_distance_function(std::shared_ptr< Function< dim >>)MultiphysicsInterface< dim > + set_initial_conditions()MultiphysicsInterface< dim >inline + set_previous_block_solutions(const PhysicsID physics_id, std::vector< GlobalBlockVectorType > *previous_solutions_vector)MultiphysicsInterface< dim >inline + set_previous_solutions(const PhysicsID physics_id, std::vector< GlobalVectorType > *previous_solutions_vector)MultiphysicsInterface< dim >inline + set_reynolds_stress_solutions(const PhysicsID physics_id, GlobalVectorType *solution_vector)MultiphysicsInterface< dim >inline + set_solid(std::vector< std::shared_ptr< SolidBase< dim, dim >>> *solids_input)MultiphysicsInterface< dim >inline + set_solution(const PhysicsID physics_id, GlobalVectorType *solution_vector)MultiphysicsInterface< dim >inline + set_time_average_solution(const PhysicsID physics_id, GlobalVectorType *solution_vector)MultiphysicsInterface< dim >inline + setup_dofs()MultiphysicsInterface< dim >inline + solidsMultiphysicsInterface< dim >private + solve(const bool fluid_dynamics_has_been_solved, const Parameters::SimulationControl::TimeSteppingMethod time_stepping_method)MultiphysicsInterface< dim >inline + solve_block_physics(const PhysicsID physics_id, const Parameters::SimulationControl::TimeSteppingMethod time_stepping_method)MultiphysicsInterface< dim >inline + solve_linear_system(const PhysicsID physics_id, const bool initial_step, const bool renewed_matrix=true)MultiphysicsInterface< dim >inline + solve_physics(const PhysicsID physics_id, const Parameters::SimulationControl::TimeSteppingMethod time_stepping_method)MultiphysicsInterface< dim >inline + solve_pre_fluidMultiphysicsInterface< dim >private + update_boundary_conditions()MultiphysicsInterface< dim >inline + verbosityMultiphysicsInterface< dim >private + write_checkpoint()MultiphysicsInterface< dim >inlinevirtual
    diff --git a/doxygen/classMultiphysicsInterface.html b/doxygen/classMultiphysicsInterface.html index a0d3f3110f..205090cf68 100644 --- a/doxygen/classMultiphysicsInterface.html +++ b/doxygen/classMultiphysicsInterface.html @@ -143,6 +143,10 @@   DoFHandler< dim > * get_projected_phase_fraction_gradient_dof_handler ()   +std::shared_ptr< Function< dim > > get_immersed_solid_signed_distance_function () +  +void set_immersed_solid_signed_distance_function (std::shared_ptr< Function< dim >>) +  std::vector< GlobalVectorType > * get_previous_solutions (const PhysicsID physics_id)   std::vector< GlobalBlockVectorType > * get_block_previous_solutions (const PhysicsID physics_id) @@ -219,6 +223,8 @@   GlobalVectorType * reynolds_stress_solutions   +std::shared_ptr< Function< dim > > immersed_solid_signed_distance_function +  std::map< PhysicsID, GlobalVectorType * > physics_solutions_m1   std::map< PhysicsID, GlobalBlockVectorType * > block_physics_solutions_m1 @@ -275,7 +281,7 @@

    Definition at line 67 of file multiphysics_interface.cc.

    -

    References MultiphysicsInterface< dim >::active_physics, cahn_hilliard, Parameters::Multiphysics::cahn_hilliard, fluid_dynamics, heat_transfer, Parameters::Multiphysics::heat_transfer, MultiphysicsInterface< dim >::inspect_multiphysics_models_dependencies(), SimulationParameters< dim >::linear_solver, MultiphysicsInterface< dim >::multiphysics_parameters, SimulationParameters< dim >::non_linear_solver, MultiphysicsInterface< dim >::physics, Parameters::quiet, tracer, Parameters::Multiphysics::tracer, Parameters::verbose, MultiphysicsInterface< dim >::verbosity, VOF, and Parameters::Multiphysics::VOF.

    +

    References MultiphysicsInterface< dim >::active_physics, cahn_hilliard, Parameters::Multiphysics::cahn_hilliard, fluid_dynamics, heat_transfer, Parameters::Multiphysics::heat_transfer, MultiphysicsInterface< dim >::inspect_multiphysics_models_dependencies(), SimulationParameters< dim >::linear_solver, MultiphysicsInterface< dim >::multiphysics_parameters, SimulationParameters< dim >::non_linear_solver, MultiphysicsInterface< dim >::physics, Parameters::quiet, tracer, Parameters::Multiphysics::tracer, Parameters::verbose, MultiphysicsInterface< dim >::verbosity, VOF, and Parameters::Multiphysics::VOF.

    @@ -397,7 +403,7 @@

    Definition at line 808 of file multiphysics_interface.h.

    +

    Definition at line 819 of file multiphysics_interface.h.

    @@ -529,7 +535,7 @@

    Definition at line 590 of file multiphysics_interface.h.

    +

    Definition at line 601 of file multiphysics_interface.h.

    @@ -727,6 +733,26 @@

    Definition at line 454 of file multiphysics_interface.h.

    + + + +

    ◆ get_immersed_solid_signed_distance_function()

    + +
    +
    +
    +template<int dim>
    + + + + +
    std::shared_ptr< Function< dim > > MultiphysicsInterface< dim >::get_immersed_solid_signed_distance_function
    +
    + +

    Request immersed solid signed distance function.

    + +

    Definition at line 221 of file multiphysics_interface.cc.

    +
    @@ -763,7 +789,7 @@

    Definition at line 574 of file multiphysics_interface.h.

    +

    Definition at line 585 of file multiphysics_interface.h.

    @@ -984,7 +1010,7 @@

    -

    Definition at line 221 of file multiphysics_interface.cc.

    +

    Definition at line 238 of file multiphysics_interface.cc.

    References _unused, Parameters::Multiphysics::buoyancy_force, Parameters::VOF_InterfaceSharpening::enable, Parameters::VOF_SurfaceTensionForce::enable, Parameters::VOF_SurfaceTensionForce::enable_marangoni_effect, Parameters::Multiphysics::fluid_dynamics, Parameters::Multiphysics::heat_transfer, SimulationParameters< dim >::multiphysics, Parameters::VOF::sharpening, Parameters::VOF::surface_tension_force, Parameters::Multiphysics::VOF, and Parameters::Multiphysics::vof_parameters.

    @@ -1149,7 +1175,7 @@

    Definition at line 843 of file multiphysics_interface.h.

    +

    Definition at line 854 of file multiphysics_interface.h.

    @@ -1198,7 +1224,7 @@

    Definition at line 769 of file multiphysics_interface.h.

    +

    Definition at line 780 of file multiphysics_interface.h.

    @@ -1247,7 +1273,7 @@

    Definition at line 714 of file multiphysics_interface.h.

    +

    Definition at line 725 of file multiphysics_interface.h.

    @@ -1296,7 +1322,7 @@

    Definition at line 732 of file multiphysics_interface.h.

    +

    Definition at line 743 of file multiphysics_interface.h.

    @@ -1345,7 +1371,7 @@

    Definition at line 607 of file multiphysics_interface.h.

    +

    Definition at line 618 of file multiphysics_interface.h.

    @@ -1394,7 +1420,31 @@

    Definition at line 656 of file multiphysics_interface.h.

    +

    Definition at line 667 of file multiphysics_interface.h.

    + + + + +

    ◆ set_immersed_solid_signed_distance_function()

    + +
    +
    +
    +template<int dim>
    + + + + + + + + +
    void MultiphysicsInterface< dim >::set_immersed_solid_signed_distance_function (std::shared_ptr< Function< dim >> function)
    +
    + +

    Share immersed solid signed distance function.

    + +

    Definition at line 230 of file multiphysics_interface.cc.

    @@ -1474,7 +1524,7 @@

    Definition at line 788 of file multiphysics_interface.h.

    +

    Definition at line 799 of file multiphysics_interface.h.

    @@ -1523,7 +1573,7 @@

    Definition at line 750 of file multiphysics_interface.h.

    +

    Definition at line 761 of file multiphysics_interface.h.

    @@ -1572,7 +1622,7 @@

    Definition at line 695 of file multiphysics_interface.h.

    +

    Definition at line 706 of file multiphysics_interface.h.

    @@ -1610,7 +1660,7 @@

    Definition at line 622 of file multiphysics_interface.h.

    +

    Definition at line 633 of file multiphysics_interface.h.

    @@ -1659,7 +1709,7 @@

    Definition at line 635 of file multiphysics_interface.h.

    +

    Definition at line 646 of file multiphysics_interface.h.

    @@ -1708,7 +1758,7 @@

    Definition at line 675 of file multiphysics_interface.h.

    +

    Definition at line 686 of file multiphysics_interface.h.

    @@ -2009,7 +2059,7 @@

    Definition at line 826 of file multiphysics_interface.h.

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    Definition at line 837 of file multiphysics_interface.h.

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    ◆ immersed_solid_signed_distance_function

    + +
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    +template<int dim>
    + + + + + +
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    std::shared_ptr<Function<dim> > MultiphysicsInterface< dim >::immersed_solid_signed_distance_function
    +     		+private
    +
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    heat_transfer
    @ heat_transfer
    Definition: multiphysics.h:27
    cahn_hilliard
    @ cahn_hilliard
    Definition: multiphysics.h:30
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    diff --git a/doxygen/classNavierStokesBase.html b/doxygen/classNavierStokesBase.html index 8ee6e77a20..d1ca231bea 100644 --- a/doxygen/classNavierStokesBase.html +++ b/doxygen/classNavierStokesBase.html @@ -375,7 +375,7 @@

    Definition at line 61 of file navier_stokes_base.cc.

    -

    References NavierStokesBase< dim, VectorType, DofsType >::cell_quadrature, NavierStokesBase< dim, VectorType, DofsType >::dof_handler, NavierStokesBase< dim, VectorType, DofsType >::face_quadrature, NavierStokesBase< dim, VectorType, DofsType >::fe, SimulationParameters< dim >::fem_parameters, fluid_dynamics, SimulationParameters< dim >::linear_solver, Parameters::LinearSolver::lsmg, NavierStokesBase< dim, VectorType, DofsType >::mapping, NavierStokesBase< dim, VectorType, DofsType >::mpi_communicator, NavierStokesBase< dim, VectorType, DofsType >::number_quadrature_points, Parameters::FEM::pressure_order, NavierStokesBase< dim, VectorType, DofsType >::simulation_parameters, NavierStokesBase< dim, VectorType, DofsType >::triangulation, NavierStokesBase< dim, VectorType, DofsType >::velocity_fem_degree, and Parameters::FEM::velocity_order.

    +

    References NavierStokesBase< dim, VectorType, DofsType >::cell_quadrature, NavierStokesBase< dim, VectorType, DofsType >::dof_handler, NavierStokesBase< dim, VectorType, DofsType >::face_quadrature, NavierStokesBase< dim, VectorType, DofsType >::fe, SimulationParameters< dim >::fem_parameters, fluid_dynamics, SimulationParameters< dim >::linear_solver, Parameters::LinearSolver::lsmg, NavierStokesBase< dim, VectorType, DofsType >::mapping, NavierStokesBase< dim, VectorType, DofsType >::mpi_communicator, NavierStokesBase< dim, VectorType, DofsType >::number_quadrature_points, Parameters::FEM::pressure_order, NavierStokesBase< dim, VectorType, DofsType >::simulation_parameters, NavierStokesBase< dim, VectorType, DofsType >::triangulation, NavierStokesBase< dim, VectorType, DofsType >::velocity_fem_degree, and Parameters::FEM::velocity_order.

    @@ -1843,7 +1843,7 @@

    Definition at line 1720 of file navier_stokes_base.cc.

    -

    References Parameters::PostProcessing::apparent_viscosity_output_name, Parameters::PostProcessing::calculate_apparent_viscosity, Parameters::PostProcessing::calculate_enstrophy, Parameters::PostProcessing::calculate_flow_rate, Parameters::PostProcessing::calculate_kinetic_energy, Parameters::PostProcessing::calculate_pressure_drop, Parameters::PostProcessing::calculate_pressure_power, Parameters::PostProcessing::calculate_viscous_dissipation, deserialize_table(), Parameters::PostProcessing::enstrophy_output_name, Parameters::PostProcessing::flow_rate_output_name, Parameters::PostProcessing::kinetic_energy_output_name, Parameters::PostProcessing::pressure_drop_output_name, Parameters::PostProcessing::pressure_power_output_name, and Parameters::PostProcessing::viscous_dissipation_output_name.

    +

    References Parameters::PostProcessing::apparent_viscosity_output_name, Parameters::PostProcessing::calculate_apparent_viscosity, Parameters::PostProcessing::calculate_enstrophy, Parameters::PostProcessing::calculate_flow_rate, Parameters::PostProcessing::calculate_kinetic_energy, Parameters::PostProcessing::calculate_pressure_drop, Parameters::PostProcessing::calculate_pressure_power, Parameters::PostProcessing::calculate_viscous_dissipation, deserialize_table(), Parameters::PostProcessing::enstrophy_output_name, Parameters::PostProcessing::flow_rate_output_name, Parameters::PostProcessing::kinetic_energy_output_name, Parameters::PostProcessing::pressure_drop_output_name, Parameters::PostProcessing::pressure_power_output_name, and Parameters::PostProcessing::viscous_dissipation_output_name.

    @@ -2209,7 +2209,7 @@

    Definition at line 2474 of file navier_stokes_base.cc.

    -

    References Parameters::PostProcessing::apparent_viscosity_output_name, Parameters::PostProcessing::calculate_apparent_viscosity, Parameters::PostProcessing::calculate_enstrophy, Parameters::PostProcessing::calculate_flow_rate, Parameters::PostProcessing::calculate_kinetic_energy, Parameters::PostProcessing::calculate_pressure_drop, Parameters::PostProcessing::calculate_pressure_power, Parameters::PostProcessing::calculate_viscous_dissipation, Parameters::PostProcessing::enstrophy_output_name, Parameters::PostProcessing::flow_rate_output_name, Parameters::PostProcessing::kinetic_energy_output_name, Parameters::PostProcessing::pressure_drop_output_name, Parameters::PostProcessing::pressure_power_output_name, serialize_table(), and Parameters::PostProcessing::viscous_dissipation_output_name.

    +

    References Parameters::PostProcessing::apparent_viscosity_output_name, Parameters::PostProcessing::calculate_apparent_viscosity, Parameters::PostProcessing::calculate_enstrophy, Parameters::PostProcessing::calculate_flow_rate, Parameters::PostProcessing::calculate_kinetic_energy, Parameters::PostProcessing::calculate_pressure_drop, Parameters::PostProcessing::calculate_pressure_power, Parameters::PostProcessing::calculate_viscous_dissipation, Parameters::PostProcessing::enstrophy_output_name, Parameters::PostProcessing::flow_rate_output_name, Parameters::PostProcessing::kinetic_energy_output_name, Parameters::PostProcessing::pressure_drop_output_name, Parameters::PostProcessing::pressure_power_output_name, serialize_table(), and Parameters::PostProcessing::viscous_dissipation_output_name.

    diff --git a/doxygen/classNavierStokesScratchData.html b/doxygen/classNavierStokesScratchData.html index 658e8b4d41..398d112b8c 100644 --- a/doxygen/classNavierStokesScratchData.html +++ b/doxygen/classNavierStokesScratchData.html @@ -520,7 +520,7 @@

    Definition at line 96 of file navier_stokes_scratch_data.h.

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    References PhysicalPropertiesManager::is_non_newtonian().

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    References PhysicalPropertiesManager::is_non_newtonian().

    @@ -606,7 +606,7 @@

    Definition at line 375 of file navier_stokes_scratch_data.cc.

    -

    References calculate_point_property(), calculate_point_property_cahn_hilliard(), calculate_shear_rate_magnitude(), fluid_fluid, pressure, set_field_vector(), shear_rate, and temperature.

    +

    References calculate_point_property(), calculate_point_property_cahn_hilliard(), calculate_shear_rate_magnitude(), fluid_fluid, pressure, set_field_vector(), shear_rate, and temperature.

    diff --git a/doxygen/classParameters_1_1IBParticles.html b/doxygen/classParameters_1_1IBParticles.html index e4420ea38f..e33360e668 100644 --- a/doxygen/classParameters_1_1IBParticles.html +++ b/doxygen/classParameters_1_1IBParticles.html @@ -171,7 +171,7 @@ class Parameters::IBParticles< dim >

    -

    Definition at line 1440 of file parameters.h.

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    Definition at line 1466 of file parameters.h.

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    ◆ declare_default_entry()

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    diff --git a/doxygen/classParameters_1_1Laser.html b/doxygen/classParameters_1_1Laser.html index 65a0f554af..1b94f63d61 100644 --- a/doxygen/classParameters_1_1Laser.html +++ b/doxygen/classParameters_1_1Laser.html @@ -154,7 +154,7 @@

    Laser parameters - Defines the parameters for the laser heat source.

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    diff --git a/doxygen/classParameters_1_1Material-members.html b/doxygen/classParameters_1_1Material-members.html index 2e82ad9989..f42f7c635a 100644 --- a/doxygen/classParameters_1_1Material-members.html +++ b/doxygen/classParameters_1_1Material-members.html @@ -86,26 +86,29 @@ densityParameters::Material density_modelParameters::Material DensityModel enum nameParameters::Material - isothermal_ideal_gas_density_parametersParameters::Material - k_A0Parameters::Material - k_A1Parameters::Material - kinematic_viscosityParameters::Material - Material()Parameters::Materialinline - non_newtonian_parametersParameters::Material - parse_parameters(ParameterHandler &prm, std::string material_prefix, const unsigned int id, const Dimensionality dimensions)Parameters::Material - phase_change_parametersParameters::Material - rheological_modelParameters::Material - RheologicalModel enum nameParameters::Material - specific_heatParameters::Material - specific_heat_modelParameters::Material - SpecificHeatModel enum nameParameters::Material - thermal_conductivityParameters::Material - thermal_conductivity_modelParameters::Material - thermal_expansionParameters::Material - thermal_expansion_modelParameters::Material - ThermalConductivityModel enum nameParameters::Material - ThermalExpansionModel enum nameParameters::Material - tracer_diffusivityParameters::Material + immersed_solid_tanh_parametersParameters::Material + isothermal_ideal_gas_density_parametersParameters::Material + k_A0Parameters::Material + k_A1Parameters::Material + kinematic_viscosityParameters::Material + Material()Parameters::Materialinline + non_newtonian_parametersParameters::Material + parse_parameters(ParameterHandler &prm, std::string material_prefix, const unsigned int id, const Dimensionality dimensions)Parameters::Material + phase_change_parametersParameters::Material + rheological_modelParameters::Material + RheologicalModel enum nameParameters::Material + specific_heatParameters::Material + specific_heat_modelParameters::Material + SpecificHeatModel enum nameParameters::Material + thermal_conductivityParameters::Material + thermal_conductivity_modelParameters::Material + thermal_expansionParameters::Material + thermal_expansion_modelParameters::Material + ThermalConductivityModel enum nameParameters::Material + ThermalExpansionModel enum nameParameters::Material + tracer_diffusivityParameters::Material + tracer_diffusivity_modelParameters::Material + TracerDiffusivityModel enum nameParameters::Material
    diff --git a/doxygen/classParameters_1_1Material.html b/doxygen/classParameters_1_1Material.html index 7a527bf208..70a463a68d 100644 --- a/doxygen/classParameters_1_1Material.html +++ b/doxygen/classParameters_1_1Material.html @@ -112,6 +112,10 @@ , phase_change }   +enum class  TracerDiffusivityModel { constant +, immersed_boundary_tanh + } +  @@ -152,6 +156,10 @@ + + + + @@ -160,7 +168,7 @@

    Detailed Description

    Material - Class that defines the physical property of a material. Generally a material will be a fluid, but for conjugated heat transfer, this may also be a solid.

    -

    Definition at line 366 of file parameters.h.

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    Definition at line 381 of file parameters.h.

    Member Enumeration Documentation

    ◆ DensityModel

    @@ -186,7 +194,7 @@

    isothermal_ideal_gas 

    Public Member Functions

     
    enum Parameters::Material::ThermalExpansionModel thermal_expansion_model
     
    enum Parameters::Material::TracerDiffusivityModel tracer_diffusivity_model
     
    ImmersedSolidTanhParameters immersed_solid_tanh_parameters
     
    double k_A0
     
    double k_A1
    -

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    phase_change  -

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    phase_change  -

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    Definition at line 444 of file parameters.h.

    + + + + +

    ◆ TracerDiffusivityModel

    + +
    +
    + + + + + +
    + + + + +
    enum Parameters::Material::TracerDiffusivityModel
    +     		+strong
    +
    + + + +
    Enumerator
    constant 
    immersed_boundary_tanh 
    + +

    Definition at line 450 of file parameters.h.

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    References Parameters::PhaseChange::declare_parameters(), Parameters::NonNewtonian::declare_parameters(), Parameters::IsothermalIdealGasDensityParameters::declare_parameters(), isothermal_ideal_gas_density_parameters, non_newtonian_parameters, and phase_change_parameters.

    +

    References Parameters::PhaseChange::declare_parameters(), Parameters::NonNewtonian::declare_parameters(), Parameters::ImmersedSolidTanhParameters::declare_parameters(), Parameters::IsothermalIdealGasDensityParameters::declare_parameters(), immersed_solid_tanh_parameters, isothermal_ideal_gas_density_parameters, non_newtonian_parameters, and phase_change_parameters.

    @@ -410,9 +446,9 @@

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    References carreau, constant, density, density_model, Parameters::Dimensionality::density_scaling, Parameters::Dimensionality::diffusivity_scaling, isothermal_ideal_gas, isothermal_ideal_gas_density_parameters, k_A0, k_A1, kinematic_viscosity, linear, newtonian, non_newtonian_parameters, Parameters::PhaseChange::parse_parameters(), Parameters::NonNewtonian::parse_parameters(), Parameters::IsothermalIdealGasDensityParameters::parse_parameters(), phase_change, phase_change_parameters, powerlaw, rheological_model, specific_heat, specific_heat_model, Parameters::Dimensionality::specific_heat_scaling, Parameters::Dimensionality::temperature, thermal_conductivity, thermal_conductivity_model, Parameters::Dimensionality::thermal_conductivity_scaling, thermal_expansion, thermal_expansion_model, tracer_diffusivity, and Parameters::Dimensionality::viscosity_scaling.

    +

    References carreau, constant, density, density_model, Parameters::Dimensionality::density_scaling, Parameters::Dimensionality::diffusivity_scaling, immersed_boundary_tanh, immersed_solid_tanh_parameters, isothermal_ideal_gas, isothermal_ideal_gas_density_parameters, k_A0, k_A1, kinematic_viscosity, linear, newtonian, non_newtonian_parameters, Parameters::PhaseChange::parse_parameters(), Parameters::NonNewtonian::parse_parameters(), Parameters::ImmersedSolidTanhParameters::parse_parameters(), Parameters::IsothermalIdealGasDensityParameters::parse_parameters(), phase_change, phase_change_parameters, powerlaw, rheological_model, specific_heat, specific_heat_model, Parameters::Dimensionality::specific_heat_scaling, Parameters::Dimensionality::temperature, thermal_conductivity, thermal_conductivity_model, Parameters::Dimensionality::thermal_conductivity_scaling, thermal_expansion, thermal_expansion_model, tracer_diffusivity, tracer_diffusivity_model, and Parameters::Dimensionality::viscosity_scaling.

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    ◆ immersed_solid_tanh_parameters

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    ImmersedSolidTanhParameters Parameters::Material::immersed_solid_tanh_parameters
    +
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    ◆ tracer_diffusivity_model

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    enum Parameters::Material::TracerDiffusivityModel Parameters::Material::tracer_diffusivity_model
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    diff --git a/doxygen/classParameters_1_1MaterialInteractions.html b/doxygen/classParameters_1_1MaterialInteractions.html index caefd03ebb..e6fd39d0db 100644 --- a/doxygen/classParameters_1_1MaterialInteractions.html +++ b/doxygen/classParameters_1_1MaterialInteractions.html @@ -132,7 +132,7 @@

    Detailed Description

    MaterialInteractions - Class that defines physical properties due to interactions between two different materials (either fluid-fluid or fluid-solid).

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    Definition at line 442 of file parameters.h.

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    Definition at line 468 of file parameters.h.

    Member Enumeration Documentation

    ◆ MaterialInteractionsType

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    fluid_solid  -

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    References Parameters::SurfaceTensionParameters::declare_parameters(), Parameters::MobilityCahnHilliardParameters::declare_parameters(), mobility_cahn_hilliard_parameters, and surface_tension_parameters.

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    References Parameters::SurfaceTensionParameters::declare_parameters(), Parameters::MobilityCahnHilliardParameters::declare_parameters(), mobility_cahn_hilliard_parameters, and surface_tension_parameters.

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    References constant, fluid_fluid, fluid_fluid_interaction_with_material_interaction_id, fluid_solid, fluid_solid_interaction_with_material_interaction_id, linear, material_interaction_type, mobility_cahn_hilliard_model, mobility_cahn_hilliard_parameters, Parameters::SurfaceTensionParameters::parse_parameters(), Parameters::MobilityCahnHilliardParameters::parse_parameters(), phase_change, quartic, surface_tension_model, and surface_tension_parameters.

    +

    References constant, fluid_fluid, fluid_fluid_interaction_with_material_interaction_id, fluid_solid, fluid_solid_interaction_with_material_interaction_id, linear, material_interaction_type, mobility_cahn_hilliard_model, mobility_cahn_hilliard_parameters, Parameters::SurfaceTensionParameters::parse_parameters(), Parameters::MobilityCahnHilliardParameters::parse_parameters(), phase_change, quartic, surface_tension_model, and surface_tension_parameters.

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    diff --git a/doxygen/classParameters_1_1PhysicalProperties.html b/doxygen/classParameters_1_1PhysicalProperties.html index d12f1a9bb5..ed90e4d0a7 100644 --- a/doxygen/classParameters_1_1PhysicalProperties.html +++ b/doxygen/classParameters_1_1PhysicalProperties.html @@ -129,7 +129,7 @@

    Detailed Description

    PhysicalProperties - Define the possible physical properties. All continuum equations share the same physical properties object but only take the subset of properties they require Defined as a class with public attributes in order to use a non-static declare_parameters methods (useful for multiple fluid simulations).

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    Definition at line 490 of file parameters.h.

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    Definition at line 516 of file parameters.h.

    Constructor & Destructor Documentation

    ◆ PhysicalProperties()

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    Definition at line 830 of file parameters.cc.

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    References fluids, material_interactions, max_fluids, max_material_interactions, max_solids, number_of_fluids, number_of_material_interactions, number_of_solids, and solids.

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    References fluids, material_interactions, max_fluids, max_material_interactions, max_solids, number_of_fluids, number_of_material_interactions, number_of_solids, and solids.

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    Definition at line 849 of file parameters.cc.

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    References Parameters::MaterialInteractions::fluid_fluid, fluid_fluid_interactions_with_material_interaction_ids, fluid_solid_interactions_with_material_interaction_ids, fluids, material_interactions, max_fluids, max_material_interactions, max_solids, number_of_fluids, number_of_material_interactions, number_of_solids, reference_temperature, and solids.

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    References Parameters::MaterialInteractions::fluid_fluid, fluid_fluid_interactions_with_material_interaction_ids, fluid_solid_interactions_with_material_interaction_ids, fluids, material_interactions, max_fluids, max_material_interactions, max_solids, number_of_fluids, number_of_material_interactions, number_of_solids, reference_temperature, and solids.

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    diff --git a/doxygen/classPhaseChangeRheology.html b/doxygen/classPhaseChangeRheology.html index f94cf537a3..79a8dff331 100644 --- a/doxygen/classPhaseChangeRheology.html +++ b/doxygen/classPhaseChangeRheology.html @@ -609,7 +609,7 @@

    Definition at line 183 of file rheological_model.cc.

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    References PhysicalPropertyModel::numerical_jacobian(), and temperature.

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    References PhysicalPropertyModel::numerical_jacobian(), and temperature.

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    Definition at line 198 of file rheological_model.cc.

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    References temperature, and PhysicalPropertyModel::vector_numerical_jacobian().

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    References temperature, and PhysicalPropertyModel::vector_numerical_jacobian().

    diff --git a/doxygen/classPhysicalPropertiesManager.html b/doxygen/classPhysicalPropertiesManager.html index 722c8717bd..d08f34144f 100644 --- a/doxygen/classPhysicalPropertiesManager.html +++ b/doxygen/classPhysicalPropertiesManager.html @@ -320,7 +320,7 @@

    Definition at line 356 of file physical_properties_manager.h.

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    References InterfacePropertyModel::depends_on(), and required_fields.

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    References InterfacePropertyModel::depends_on(), and required_fields.

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    Definition at line 20 of file physical_properties_manager.cc.

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    References PhysicalPropertyModel::depends_on(), and required_fields.

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    References fluid_fluid, and fluid_solid.

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    Returns
    A shared pointer to a MobilityCahnHilliardModel which inherits from the InterfacePropertyModel class.
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    Returns
    A vector of shared pointer, each one them pointing to a MobilityCahnHilliardModel.
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    References constant_density, constant_surface_tension, density, establish_fields_required_by_model(), Parameters::PhysicalProperties::fluid_fluid_interactions_with_material_interaction_ids, fluid_fluid_interactions_with_material_interaction_ids, Parameters::PhysicalProperties::fluid_solid_interactions_with_material_interaction_ids, fluid_solid_interactions_with_material_interaction_ids, Parameters::PhysicalProperties::fluids, is_initialized, Parameters::PhysicalProperties::material_interactions, mobility_cahn_hilliard, DensityModel::model_cast(), RheologicalModel::model_cast(), SpecificHeatModel::model_cast(), ThermalConductivityModel::model_cast(), ThermalExpansionModel::model_cast(), TracerDiffusivityModel::model_cast(), MobilityCahnHilliardModel::model_cast(), SurfaceTensionModel::model_cast(), non_newtonian_flow, Parameters::PhysicalProperties::number_of_fluids, number_of_fluids, Parameters::PhysicalProperties::number_of_material_interactions, number_of_material_interactions, Parameters::PhysicalProperties::number_of_solids, number_of_solids, Parameters::Material::phase_change, phase_change, phase_change_parameters, phase_order_cahn_hilliard, physical_properties_parameters, pressure, Parameters::PhysicalProperties::reference_temperature, reference_temperature, required_fields, rheology, shear_rate, Parameters::PhysicalProperties::solids, specific_heat, surface_tension, temperature, temperature_p1, temperature_p2, thermal_conductivity, thermal_expansion, and tracer_diffusivity.

    +

    References constant_density, constant_surface_tension, density, establish_fields_required_by_model(), Parameters::PhysicalProperties::fluid_fluid_interactions_with_material_interaction_ids, fluid_fluid_interactions_with_material_interaction_ids, Parameters::PhysicalProperties::fluid_solid_interactions_with_material_interaction_ids, fluid_solid_interactions_with_material_interaction_ids, Parameters::PhysicalProperties::fluids, is_initialized, levelset, Parameters::PhysicalProperties::material_interactions, mobility_cahn_hilliard, DensityModel::model_cast(), RheologicalModel::model_cast(), SpecificHeatModel::model_cast(), ThermalConductivityModel::model_cast(), ThermalExpansionModel::model_cast(), TracerDiffusivityModel::model_cast(), MobilityCahnHilliardModel::model_cast(), SurfaceTensionModel::model_cast(), non_newtonian_flow, Parameters::PhysicalProperties::number_of_fluids, number_of_fluids, Parameters::PhysicalProperties::number_of_material_interactions, number_of_material_interactions, Parameters::PhysicalProperties::number_of_solids, number_of_solids, Parameters::Material::phase_change, phase_change, phase_change_parameters, phase_order_cahn_hilliard, physical_properties_parameters, pressure, Parameters::PhysicalProperties::reference_temperature, reference_temperature, required_fields, rheology, shear_rate, Parameters::PhysicalProperties::solids, specific_heat, surface_tension, temperature, temperature_p1, temperature_p2, thermal_conductivity, thermal_expansion, and tracer_diffusivity.

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    diff --git a/doxygen/classPhysicalPropertyModel.html b/doxygen/classPhysicalPropertyModel.html index 6d7e9dbafd..af7845b045 100644 --- a/doxygen/classPhysicalPropertyModel.html +++ b/doxygen/classPhysicalPropertyModel.html @@ -94,7 +94,7 @@ - + @@ -109,6 +109,7 @@ +
    [legend]
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    Detailed Description

    Abstract class that defines the interface for a physical property model Physical property model provides an abstract interface to calculate the value of a physical property or a vector of physical property value for given field value. By default, the interface does not require that all (or any) fields be specified. This is why a map is used to pass the dependent variable. To allow for the calculation of the appropriate jacobian matrix (when that is necessary) the interface also provides a jacobian function, which must provide the derivative with respect to the field specified as an argument.

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    Constructor & Destructor Documentation

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    PhysicalPropertyModel Default constructor. Set the model_depends_on to false for all variables.

    -

    Definition at line 91 of file physical_property_model.h.

    +

    Definition at line 92 of file physical_property_model.h.

    -

    References phase_order_cahn_hilliard, pressure, shear_rate, temperature, temperature_p1, and temperature_p2.

    +

    References levelset, phase_order_cahn_hilliard, pressure, shear_rate, temperature, temperature_p1, and temperature_p2.

    @@ -211,7 +212,7 @@

    PhysicalPropertyModel depends on a field, false if not.

    -

    Definition at line 106 of file physical_property_model.h.

    +

    Definition at line 108 of file physical_property_model.h.

    @@ -238,7 +239,7 @@

    -

    Definition at line 232 of file physical_property_model.h.

    +

    Definition at line 234 of file physical_property_model.h.

    @@ -286,7 +287,7 @@

    Returns
    value of the partial derivative of the property with respect to the field.
    -

    Implemented in ThermalExpansionPhaseChange, ThermalConductivityPhaseChange, PhaseChangeSpecificHeat, ConstantSpecificHeat, DensityIsothermalIdealGas, DensityConstant, ConstantTracerDiffusivity, ConstantThermalExpansion, ThermalConductivityLinear, ConstantThermalConductivity, PhaseChangeRheology, Carreau, PowerLaw, and Newtonian.

    +

    Implemented in TanhLevelsetTracerDiffusivity, ThermalExpansionPhaseChange, ThermalConductivityPhaseChange, PhaseChangeSpecificHeat, ConstantSpecificHeat, DensityIsothermalIdealGas, DensityConstant, ConstantTracerDiffusivity, ConstantThermalExpansion, ThermalConductivityLinear, ConstantThermalConductivity, PhaseChangeRheology, Carreau, PowerLaw, and Newtonian.

    @@ -334,7 +335,7 @@

    Returns
    -

    Definition at line 176 of file physical_property_model.h.

    +

    Definition at line 178 of file physical_property_model.h.

    @@ -370,7 +371,7 @@

    Definition at line 161 of file physical_property_model.h.

    +

    Definition at line 163 of file physical_property_model.h.

    @@ -407,7 +408,7 @@

    Returns
    value of the physical property calculated with the fields_value
    -

    Implemented in ThermalExpansionPhaseChange, ThermalConductivityPhaseChange, ThermalConductivityLinear, PhaseChangeSpecificHeat, ConstantSpecificHeat, PowerLaw, DensityIsothermalIdealGas, DensityConstant, ConstantTracerDiffusivity, ConstantThermalExpansion, ConstantThermalConductivity, PhaseChangeRheology, Carreau, and Newtonian.

    +

    Implemented in ThermalExpansionPhaseChange, ThermalConductivityPhaseChange, ThermalConductivityLinear, TanhLevelsetTracerDiffusivity, PhaseChangeSpecificHeat, ConstantSpecificHeat, PowerLaw, DensityIsothermalIdealGas, DensityConstant, ConstantTracerDiffusivity, ConstantThermalExpansion, ConstantThermalConductivity, PhaseChangeRheology, Carreau, and Newtonian.

    @@ -461,7 +462,7 @@

    ThermalExpansionPhaseChange, ThermalConductivityPhaseChange, PhaseChangeSpecificHeat, ConstantSpecificHeat, DensityIsothermalIdealGas, DensityConstant, ConstantTracerDiffusivity, ConstantThermalExpansion, ThermalConductivityLinear, ConstantThermalConductivity, PhaseChangeRheology, Carreau, PowerLaw, and Newtonian.

    +

    Implemented in TanhLevelsetTracerDiffusivity, ThermalExpansionPhaseChange, ThermalConductivityPhaseChange, PhaseChangeSpecificHeat, ConstantSpecificHeat, DensityIsothermalIdealGas, DensityConstant, ConstantTracerDiffusivity, ConstantThermalExpansion, ThermalConductivityLinear, ConstantThermalConductivity, PhaseChangeRheology, Carreau, PowerLaw, and Newtonian.

    @@ -516,7 +517,7 @@

    Returns
    -

    Definition at line 197 of file physical_property_model.h.

    +

    Definition at line 199 of file physical_property_model.h.

    @@ -562,7 +563,7 @@

    ThermalExpansionPhaseChange, ThermalConductivityPhaseChange, ThermalConductivityLinear, PhaseChangeSpecificHeat, ConstantSpecificHeat, DensityIsothermalIdealGas, DensityConstant, ConstantTracerDiffusivity, ConstantThermalExpansion, ConstantThermalConductivity, PhaseChangeRheology, Carreau, PowerLaw, and Newtonian.

    +

    Implemented in TanhLevelsetTracerDiffusivity, ThermalExpansionPhaseChange, ThermalConductivityPhaseChange, ThermalConductivityLinear, PhaseChangeSpecificHeat, ConstantSpecificHeat, DensityIsothermalIdealGas, DensityConstant, ConstantTracerDiffusivity, ConstantThermalExpansion, ConstantThermalConductivity, PhaseChangeRheology, Carreau, PowerLaw, and Newtonian.

    @@ -587,7 +588,7 @@

    -

    Definition at line 239 of file physical_property_model.h.

    +

    Definition at line 241 of file physical_property_model.h.

    @@ -611,7 +612,7 @@

    -

    Definition at line 246 of file physical_property_model.h.

    +

    Definition at line 248 of file physical_property_model.h.

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    Definition at line 151 of file physics_solver.h.

    -

    References Parameters::NonLinearSolver::inexact_newton, Parameters::NonLinearSolver::kinsol_newton, Parameters::NonLinearSolver::newton, PhysicsSolver< VectorType >::non_linear_solver, and Parameters::NonLinearSolver::solver.

    +

    References Parameters::NonLinearSolver::inexact_newton, Parameters::NonLinearSolver::kinsol_newton, Parameters::NonLinearSolver::newton, PhysicsSolver< VectorType >::non_linear_solver, and Parameters::NonLinearSolver::solver.

    diff --git a/doxygen/classRheologicalModel.html b/doxygen/classRheologicalModel.html index 272870e405..f4f2675898 100644 --- a/doxygen/classRheologicalModel.html +++ b/doxygen/classRheologicalModel.html @@ -683,7 +683,7 @@

    Definition at line 4 of file rheological_model.cc.

    -

    References Parameters::CarreauParameters::a, Parameters::Material::carreau, Parameters::NonNewtonian::carreau_parameters, Parameters::PowerLawParameters::K, Parameters::Material::kinematic_viscosity, Parameters::CarreauParameters::kinematic_viscosity_0, Parameters::CarreauParameters::kinematic_viscosity_inf, Parameters::CarreauParameters::lambda, Parameters::PowerLawParameters::n, Parameters::CarreauParameters::n, Parameters::Material::newtonian, Parameters::Material::non_newtonian_parameters, Parameters::Material::phase_change_parameters, Parameters::Material::powerlaw, Parameters::NonNewtonian::powerlaw_parameters, Parameters::Material::rheological_model, and Parameters::PowerLawParameters::shear_rate_min.

    +

    References Parameters::CarreauParameters::a, Parameters::Material::carreau, Parameters::NonNewtonian::carreau_parameters, Parameters::PowerLawParameters::K, Parameters::Material::kinematic_viscosity, Parameters::CarreauParameters::kinematic_viscosity_0, Parameters::CarreauParameters::kinematic_viscosity_inf, Parameters::CarreauParameters::lambda, Parameters::PowerLawParameters::n, Parameters::CarreauParameters::n, Parameters::Material::newtonian, Parameters::Material::non_newtonian_parameters, Parameters::Material::phase_change_parameters, Parameters::Material::powerlaw, Parameters::NonNewtonian::powerlaw_parameters, Parameters::Material::rheological_model, and Parameters::PowerLawParameters::shear_rate_min.

    diff --git a/doxygen/classSimulationParameters.html b/doxygen/classSimulationParameters.html index beec23f872..fa88b3eee7 100644 --- a/doxygen/classSimulationParameters.html +++ b/doxygen/classSimulationParameters.html @@ -217,7 +217,7 @@

    Definition at line 78 of file simulation_parameters.h.

    -

    References SimulationParameters< dim >::ale, SimulationParameters< dim >::analytical_solution, Parameters::SizeOfSubsections::boundary_conditions, SimulationParameters< dim >::boundary_conditions, SimulationParameters< dim >::boundary_conditions_cahn_hilliard, SimulationParameters< dim >::boundary_conditions_ht, SimulationParameters< dim >::boundary_conditions_tracer, SimulationParameters< dim >::boundary_conditions_vof, SimulationParameters< dim >::constrain_solid_domain, Parameters::Dimensionality::declare_parameters(), Parameters::Manifolds::declare_parameters(), Parameters::SimulationControl::declare_parameters(), Parameters::PhysicalProperties::declare_parameters(), Parameters::Stabilization::declare_parameters(), Parameters::Timer::declare_parameters(), Parameters::Forces::declare_parameters(), Parameters::PostProcessing::declare_parameters(), Parameters::FEM::declare_parameters(), Parameters::Mesh::declare_parameters(), Parameters::MeshAdaptation::declare_parameters(), Parameters::Testing::declare_parameters(), Parameters::Restart::declare_parameters(), Parameters::VelocitySource::declare_parameters(), Parameters::DynamicFlowControl::declare_parameters(), Parameters::Evaporation::declare_parameters(), Parameters::Multiphysics::declare_parameters(), Parameters::NonLinearSolver::declare_parameters(), Parameters::LinearSolver::declare_parameters(), Parameters::ConstrainSolidDomain::declare_parameters(), SimulationParameters< dim >::dimensionality, SimulationParameters< dim >::initial_condition, SimulationParameters< dim >::laser_parameters, SimulationParameters< dim >::manifolds_parameters, SimulationParameters< dim >::mesh_box_refinement, SimulationParameters< dim >::multiphysics, SimulationParameters< dim >::nitsche, SimulationParameters< dim >::particlesParameters, SimulationParameters< dim >::physical_properties, SimulationParameters< dim >::physics_names, SimulationParameters< dim >::source_term, and SimulationParameters< dim >::tracer_drift_velocity.

    +

    References SimulationParameters< dim >::ale, SimulationParameters< dim >::analytical_solution, Parameters::SizeOfSubsections::boundary_conditions, SimulationParameters< dim >::boundary_conditions, SimulationParameters< dim >::boundary_conditions_cahn_hilliard, SimulationParameters< dim >::boundary_conditions_ht, SimulationParameters< dim >::boundary_conditions_tracer, SimulationParameters< dim >::boundary_conditions_vof, SimulationParameters< dim >::constrain_solid_domain, Parameters::Dimensionality::declare_parameters(), Parameters::Manifolds::declare_parameters(), Parameters::SimulationControl::declare_parameters(), Parameters::PhysicalProperties::declare_parameters(), Parameters::Stabilization::declare_parameters(), Parameters::Timer::declare_parameters(), Parameters::Forces::declare_parameters(), Parameters::PostProcessing::declare_parameters(), Parameters::FEM::declare_parameters(), Parameters::Mesh::declare_parameters(), Parameters::MeshAdaptation::declare_parameters(), Parameters::Testing::declare_parameters(), Parameters::Restart::declare_parameters(), Parameters::VelocitySource::declare_parameters(), Parameters::DynamicFlowControl::declare_parameters(), Parameters::Evaporation::declare_parameters(), Parameters::Multiphysics::declare_parameters(), Parameters::NonLinearSolver::declare_parameters(), Parameters::LinearSolver::declare_parameters(), Parameters::ConstrainSolidDomain::declare_parameters(), SimulationParameters< dim >::dimensionality, SimulationParameters< dim >::initial_condition, SimulationParameters< dim >::laser_parameters, SimulationParameters< dim >::manifolds_parameters, SimulationParameters< dim >::mesh_box_refinement, SimulationParameters< dim >::multiphysics, SimulationParameters< dim >::nitsche, SimulationParameters< dim >::particlesParameters, SimulationParameters< dim >::physical_properties, SimulationParameters< dim >::physics_names, SimulationParameters< dim >::source_term, and SimulationParameters< dim >::tracer_drift_velocity.

    @@ -313,7 +313,7 @@

    Definition at line 148 of file simulation_parameters.h.

    -

    References SimulationParameters< dim >::ale, SimulationParameters< dim >::analytical_solution, SimulationParameters< dim >::boundary_conditions, SimulationParameters< dim >::boundary_conditions_cahn_hilliard, SimulationParameters< dim >::boundary_conditions_ht, SimulationParameters< dim >::boundary_conditions_tracer, SimulationParameters< dim >::boundary_conditions_vof, Parameters::Multiphysics::cahn_hilliard, SimulationParameters< dim >::constrain_solid_domain, SimulationParameters< dim >::dimensionality, Parameters::ConstrainSolidDomain::enable, Parameters::VOF_SurfaceTensionForce::enable, Parameters::VOF_SurfaceTensionForce::enable_marangoni_effect, SimulationParameters< dim >::evaporation, SimulationParameters< dim >::fem_parameters, SimulationParameters< dim >::flow_control, Parameters::fluid1, SimulationParameters< dim >::forces_parameters, PhysicalPropertiesManager::get_number_of_fluids(), get_physics_id(), Parameters::Multiphysics::heat_transfer, SimulationParameters< dim >::initial_condition, PhysicalPropertiesManager::initialize(), SimulationParameters< dim >::is_constant_surface_tension_model(), SimulationParameters< dim >::laser_parameters, SimulationParameters< dim >::linear_solver, SimulationParameters< dim >::manifolds_parameters, Parameters::PhysicalProperties::material_interactions, SimulationParameters< dim >::mesh, SimulationParameters< dim >::mesh_adaptation, SimulationParameters< dim >::mesh_box_refinement, SimulationParameters< dim >::multiphysics, SimulationParameters< dim >::nitsche, SimulationParameters< dim >::no_fluid_fluid_interaction_error(), SimulationParameters< dim >::non_linear_solver, Parameters::ConstrainSolidDomain::number_of_constraints, Parameters::PhysicalProperties::number_of_fluids, Parameters::PhysicalProperties::number_of_material_interactions, Parameters::Dimensionality::parse_parameters(), Parameters::Manifolds::parse_parameters(), Parameters::SimulationControl::parse_parameters(), Parameters::ConstrainSolidDomain::parse_parameters(), Parameters::Stabilization::parse_parameters(), Parameters::Timer::parse_parameters(), Parameters::Forces::parse_parameters(), Parameters::PostProcessing::parse_parameters(), Parameters::FEM::parse_parameters(), Parameters::Mesh::parse_parameters(), Parameters::MeshAdaptation::parse_parameters(), Parameters::Testing::parse_parameters(), Parameters::Restart::parse_parameters(), Parameters::VelocitySource::parse_parameters(), Parameters::DynamicFlowControl::parse_parameters(), Parameters::Evaporation::parse_parameters(), Parameters::Multiphysics::parse_parameters(), Parameters::PhysicalProperties::parse_parameters(), SimulationParameters< dim >::particlesParameters, SimulationParameters< dim >::physical_properties, SimulationParameters< dim >::physical_properties_manager, SimulationParameters< dim >::physics_names, SimulationParameters< dim >::post_processing, Parameters::PostProcessing::postprocessed_fluid, SimulationParameters< dim >::restart_parameters, SimulationParameters< dim >::simulation_control, SimulationParameters< dim >::source_term, SimulationParameters< dim >::stabilization, Parameters::VOF::surface_tension_force, SimulationParameters< dim >::test, SimulationParameters< dim >::timer, SimulationParameters< dim >::tracer_drift_velocity, SimulationParameters< dim >::velocity_sources, Parameters::Multiphysics::VOF, and Parameters::Multiphysics::vof_parameters.

    +

    References SimulationParameters< dim >::ale, SimulationParameters< dim >::analytical_solution, SimulationParameters< dim >::boundary_conditions, SimulationParameters< dim >::boundary_conditions_cahn_hilliard, SimulationParameters< dim >::boundary_conditions_ht, SimulationParameters< dim >::boundary_conditions_tracer, SimulationParameters< dim >::boundary_conditions_vof, Parameters::Multiphysics::cahn_hilliard, SimulationParameters< dim >::constrain_solid_domain, SimulationParameters< dim >::dimensionality, Parameters::ConstrainSolidDomain::enable, Parameters::VOF_SurfaceTensionForce::enable, Parameters::VOF_SurfaceTensionForce::enable_marangoni_effect, SimulationParameters< dim >::evaporation, SimulationParameters< dim >::fem_parameters, SimulationParameters< dim >::flow_control, Parameters::fluid1, SimulationParameters< dim >::forces_parameters, PhysicalPropertiesManager::get_number_of_fluids(), get_physics_id(), Parameters::Multiphysics::heat_transfer, SimulationParameters< dim >::initial_condition, PhysicalPropertiesManager::initialize(), SimulationParameters< dim >::is_constant_surface_tension_model(), SimulationParameters< dim >::laser_parameters, SimulationParameters< dim >::linear_solver, SimulationParameters< dim >::manifolds_parameters, Parameters::PhysicalProperties::material_interactions, SimulationParameters< dim >::mesh, SimulationParameters< dim >::mesh_adaptation, SimulationParameters< dim >::mesh_box_refinement, SimulationParameters< dim >::multiphysics, SimulationParameters< dim >::nitsche, SimulationParameters< dim >::no_fluid_fluid_interaction_error(), SimulationParameters< dim >::non_linear_solver, Parameters::ConstrainSolidDomain::number_of_constraints, Parameters::PhysicalProperties::number_of_fluids, Parameters::PhysicalProperties::number_of_material_interactions, Parameters::Dimensionality::parse_parameters(), Parameters::Manifolds::parse_parameters(), Parameters::SimulationControl::parse_parameters(), Parameters::ConstrainSolidDomain::parse_parameters(), Parameters::Stabilization::parse_parameters(), Parameters::Timer::parse_parameters(), Parameters::Forces::parse_parameters(), Parameters::PostProcessing::parse_parameters(), Parameters::FEM::parse_parameters(), Parameters::Mesh::parse_parameters(), Parameters::MeshAdaptation::parse_parameters(), Parameters::Testing::parse_parameters(), Parameters::Restart::parse_parameters(), Parameters::VelocitySource::parse_parameters(), Parameters::DynamicFlowControl::parse_parameters(), Parameters::Evaporation::parse_parameters(), Parameters::Multiphysics::parse_parameters(), Parameters::PhysicalProperties::parse_parameters(), SimulationParameters< dim >::particlesParameters, SimulationParameters< dim >::physical_properties, SimulationParameters< dim >::physical_properties_manager, SimulationParameters< dim >::physics_names, SimulationParameters< dim >::post_processing, Parameters::PostProcessing::postprocessed_fluid, SimulationParameters< dim >::restart_parameters, SimulationParameters< dim >::simulation_control, SimulationParameters< dim >::source_term, SimulationParameters< dim >::stabilization, Parameters::VOF::surface_tension_force, SimulationParameters< dim >::test, SimulationParameters< dim >::timer, SimulationParameters< dim >::tracer_drift_velocity, SimulationParameters< dim >::velocity_sources, Parameters::Multiphysics::VOF, and Parameters::Multiphysics::vof_parameters.

    diff --git a/doxygen/classSpecificHeatModel.html b/doxygen/classSpecificHeatModel.html index f04d98d1e8..8322fc8774 100644 --- a/doxygen/classSpecificHeatModel.html +++ b/doxygen/classSpecificHeatModel.html @@ -165,7 +165,7 @@

    Definition at line 20 of file specific_heat_model.cc.

    -

    References Parameters::Material::phase_change, Parameters::Material::phase_change_parameters, Parameters::Material::specific_heat, and Parameters::Material::specific_heat_model.

    +

    References Parameters::Material::phase_change, Parameters::Material::phase_change_parameters, Parameters::Material::specific_heat, and Parameters::Material::specific_heat_model.

    diff --git a/doxygen/classSuperquadric.html b/doxygen/classSuperquadric.html index 01c3e56c06..c4f8077e37 100644 --- a/doxygen/classSuperquadric.html +++ b/doxygen/classSuperquadric.html @@ -761,6 +761,8 @@

    Definition at line 619 of file shape.cc.

    +

    References levelset.

    +

    Member Data Documentation

    diff --git a/doxygen/classSurfaceTensionModel.html b/doxygen/classSurfaceTensionModel.html index 6ebc08b538..a7a35d3e51 100644 --- a/doxygen/classSurfaceTensionModel.html +++ b/doxygen/classSurfaceTensionModel.html @@ -201,7 +201,7 @@

    Definition at line 20 of file surface_tension_model.cc.

    -

    References Parameters::MaterialInteractions::linear, Parameters::MaterialInteractions::phase_change, Parameters::SurfaceTensionParameters::surface_tension_coefficient, Parameters::MaterialInteractions::surface_tension_model, and Parameters::MaterialInteractions::surface_tension_parameters.

    +

    References Parameters::MaterialInteractions::linear, Parameters::MaterialInteractions::phase_change, Parameters::SurfaceTensionParameters::surface_tension_coefficient, Parameters::MaterialInteractions::surface_tension_model, and Parameters::MaterialInteractions::surface_tension_parameters.

    diff --git a/doxygen/classTanhLevelsetTracerDiffusivity-members.html b/doxygen/classTanhLevelsetTracerDiffusivity-members.html new file mode 100644 index 0000000000..d8f22ae9be --- /dev/null +++ b/doxygen/classTanhLevelsetTracerDiffusivity-members.html @@ -0,0 +1,105 @@ + + + + + + + +Lethe Open-Source Library: Member List + + + + + + + + + + + + +
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    Lethe Open-Source Library +
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    Developer Guide
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    + + +
    +
    +
    TanhLevelsetTracerDiffusivity Member List
    +
    +
    + +

    This is the complete list of members for TanhLevelsetTracerDiffusivity, including all inherited members.

    + + + + + + + + + + + + + + + + + + + +
    delta_diffusivityTanhLevelsetTracerDiffusivityprivate
    depends_on(const field &id)PhysicalPropertyModelinline
    get_simulation_control()PhysicalPropertyModelinlineprotected
    jacobian(const std::map< field, double > &field_values, field id) overrideTanhLevelsetTracerDiffusivityinlinevirtual
    model_cast(const Parameters::Material &material_properties)TracerDiffusivityModelstatic
    model_depends_onPhysicalPropertyModelprotected
    numerical_jacobian(const std::map< field, double > &field_values, const field id)PhysicalPropertyModelinline
    PhysicalPropertyModel()PhysicalPropertyModelinline
    provide_simulation_control(std::shared_ptr< SimulationControl > &p_simulation_control)PhysicalPropertyModelinline
    simulation_controlPhysicalPropertyModelprivate
    TanhLevelsetTracerDiffusivity(const double p_tracer_diffusivity_outside, const double p_tracer_diffusivity_inside, const double p_thickness)TanhLevelsetTracerDiffusivityinline
    thicknessTanhLevelsetTracerDiffusivityprivate
    tracer_diffusivity_insideTanhLevelsetTracerDiffusivityprivate
    tracer_diffusivity_outsideTanhLevelsetTracerDiffusivityprivate
    value(const std::map< field, double > &field_values) overrideTanhLevelsetTracerDiffusivityinlinevirtual
    vector_jacobian(const std::map< field, std::vector< double >> &field_vectors, const field id, std::vector< double > &jacobian_vector) overrideTanhLevelsetTracerDiffusivityinlinevirtual
    vector_numerical_jacobian(const std::map< field, std::vector< double >> &field_vectors, const field id, std::vector< double > &jacobian_vector)PhysicalPropertyModelinline
    vector_value(const std::map< field, std::vector< double >> &field_vectors, std::vector< double > &property_vector) overrideTanhLevelsetTracerDiffusivityinlinevirtual
    + +
    +Generated by doxygen 1.9.1 +
    + + diff --git a/doxygen/classTanhLevelsetTracerDiffusivity.html b/doxygen/classTanhLevelsetTracerDiffusivity.html new file mode 100644 index 0000000000..d90d97f649 --- /dev/null +++ b/doxygen/classTanhLevelsetTracerDiffusivity.html @@ -0,0 +1,512 @@ + + + + + + + +Lethe Open-Source Library: TanhLevelsetTracerDiffusivity Class Reference + + + + + + + + + + + + +
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    Lethe Open-Source Library +
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    Developer Guide
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    +Public Member Functions | +Private Attributes | +List of all members
    +
    +
    TanhLevelsetTracerDiffusivity Class Reference
    +
    +
    + +

    #include <tracer_diffusivity_model.h>

    +
    +Inheritance diagram for TanhLevelsetTracerDiffusivity:
    +
    +
    Inheritance graph
    + + + + + +
    [legend]
    + + + + + + + + + + + + + + + + + + + + + + + +

    +Public Member Functions

     TanhLevelsetTracerDiffusivity (const double p_tracer_diffusivity_outside, const double p_tracer_diffusivity_inside, const double p_thickness)
     
    double value (const std::map< field, double > &field_values) override
     
    void vector_value (const std::map< field, std::vector< double >> &field_vectors, std::vector< double > &property_vector) override
     
    double jacobian (const std::map< field, double > &field_values, field id) override
     
    void vector_jacobian (const std::map< field, std::vector< double >> &field_vectors, const field id, std::vector< double > &jacobian_vector) override
     
    - Public Member Functions inherited from PhysicalPropertyModel
     PhysicalPropertyModel ()
     
    bool depends_on (const field &id)
     
    void provide_simulation_control (std::shared_ptr< SimulationControl > &p_simulation_control)
     
    double numerical_jacobian (const std::map< field, double > &field_values, const field id)
     
    void vector_numerical_jacobian (const std::map< field, std::vector< double >> &field_vectors, const field id, std::vector< double > &jacobian_vector)
     
    + + + + + + + + + +

    +Private Attributes

    const double tracer_diffusivity_outside
     
    const double tracer_diffusivity_inside
     
    const double thickness
     
    const double delta_diffusivity
     
    + + + + + + + + + + +

    +Additional Inherited Members

    - Static Public Member Functions inherited from TracerDiffusivityModel
    static std::shared_ptr< TracerDiffusivityModel > model_cast (const Parameters::Material &material_properties)
     
    - Protected Member Functions inherited from PhysicalPropertyModel
    std::shared_ptr< SimulationControl > & get_simulation_control ()
     
    - Protected Attributes inherited from PhysicalPropertyModel
    std::map< field, bool > model_depends_on
     
    +

    Detailed Description

    +

    Diffusivity that depends on the levelset.

    + +

    Definition at line 116 of file tracer_diffusivity_model.h.

    +

    Constructor & Destructor Documentation

    + +

    ◆ TanhLevelsetTracerDiffusivity()

    + +
    +
    + + + + + +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    TanhLevelsetTracerDiffusivity::TanhLevelsetTracerDiffusivity (const double p_tracer_diffusivity_outside,
    const double p_tracer_diffusivity_inside,
    const double p_thickness 
    )
    +     		+inline
    +
    + +

    Constructor of the levelset-dependent diffusivity model.

    +
    Parameters
    + + + + +
    [in]p_tracer_diffusivity_outsideDiffusivity outside the solid
    [in]p_tracer_diffusivity_insideDiffusivity inside the solid
    [in]p_thicknessThickness of the tanh function used to smooth the property jump
    +
    +
    + +

    Definition at line 127 of file tracer_diffusivity_model.h.

    + +

    References levelset, and PhysicalPropertyModel::model_depends_on.

    + +
    +
    +

    Member Function Documentation

    + +

    ◆ jacobian()

    + +
    +
    + + + + + +
    + + + + + + + + + + + + + + + + + + +
    double TanhLevelsetTracerDiffusivity::jacobian (const std::map< field, double > & field_values,
    field id 
    )
    +     		+inlineoverridevirtual
    +
    + +

    Compute the jacobian (the partial derivative) of the diffusivity with respect to a specified field.

    +
    Parameters
    + + + +
    [in]field_valuesValues of the various fields on which the specific heat may depend. The map stores a single value per field.
    [in]idIndicator of the field with respect to which the jacobian should be computed.
    +
    +
    +
    Returns
    Value of the derivative of the diffusivity with respect to the specified field.
    + +

    Implements PhysicalPropertyModel.

    + +

    Definition at line 206 of file tracer_diffusivity_model.h.

    + +

    References levelset, and PhysicalPropertyModel::numerical_jacobian().

    + +
    +
    + +

    ◆ value()

    + +
    +
    + + + + + +
    + + + + + + + + +
    double TanhLevelsetTracerDiffusivity::value (const std::map< field, double > & field_values)
    +     		+inlineoverridevirtual
    +
    + +

    Compute the diffusivity.

    +
    Parameters
    + + +
    [in]field_valuesValues of the various fields on which the property may depend. In this case, the diffusivity depends on the levelset. The map stores a single value per field.
    +
    +
    +
    Returns
    Value of the diffusivity computed with the field_values.
    + +

    Implements PhysicalPropertyModel.

    + +

    Definition at line 148 of file tracer_diffusivity_model.h.

    + +

    References delta_diffusivity, levelset, thickness, and tracer_diffusivity_inside.

    + +
    +
    + +

    ◆ vector_jacobian()

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    void TanhLevelsetTracerDiffusivity::vector_jacobian (const std::map< field, std::vector< double >> & field_vectors,
    const field id,
    std::vector< double > & jacobian_vector 
    )
    +     		+inlineoverridevirtual
    +
    + +

    Compute the derivative of the diffusivity with respect to a field.

    +
    Parameters
    + + + + +
    [in]field_vectorsVector of values of the fields used to evaluate the diffusivity. The map stores a vector of values per field.
    [in]idIdentifier of the field with respect to which a derivative should be computed.
    [out]jacobianVector of computed derivative values of the diffusivity with respect to the field of the specified id.
    +
    +
    + +

    Implements PhysicalPropertyModel.

    + +

    Definition at line 232 of file tracer_diffusivity_model.h.

    + +

    References levelset, and PhysicalPropertyModel::vector_numerical_jacobian().

    + +
    +
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    ◆ vector_value()

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    void TanhLevelsetTracerDiffusivity::vector_value (const std::map< field, std::vector< double >> & field_vectors,
    std::vector< double > & property_vector 
    )
    +     		+inlineoverridevirtual
    +
    + +

    Compute a vector of diffusivity.

    +
    Parameters
    + + + +
    [in]field_vectorsVectors of the fields on which the diffusivity may depend. In this case, the diffusivity depends on the levelset. The map stores a vector of values per field.
    [out]property_vectorVectors of computed diffusivities.
    +
    +
    + +

    Implements PhysicalPropertyModel.

    + +

    Definition at line 169 of file tracer_diffusivity_model.h.

    + +

    References delta_diffusivity, levelset, thickness, and tracer_diffusivity_inside.

    + +
    +
    +

    Member Data Documentation

    + +

    ◆ delta_diffusivity

    + +
    +
    + + + + + +
    + + + + +
    const double TanhLevelsetTracerDiffusivity::delta_diffusivity
    +     		+private
    +
    + +

    Definition at line 252 of file tracer_diffusivity_model.h.

    + +
    +
    + +

    ◆ thickness

    + +
    +
    + + + + + +
    + + + + +
    const double TanhLevelsetTracerDiffusivity::thickness
    +     		+private
    +
    + +

    Definition at line 251 of file tracer_diffusivity_model.h.

    + +
    +
    + +

    ◆ tracer_diffusivity_inside

    + +
    +
    + + + + + +
    + + + + +
    const double TanhLevelsetTracerDiffusivity::tracer_diffusivity_inside
    +     		+private
    +
    + +

    Definition at line 250 of file tracer_diffusivity_model.h.

    + +
    +
    + +

    ◆ tracer_diffusivity_outside

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    +
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    + + + + +
    const double TanhLevelsetTracerDiffusivity::tracer_diffusivity_outside
    +     		+private
    +
    + +

    Definition at line 249 of file tracer_diffusivity_model.h.

    + +
    +
    +
    The documentation for this class was generated from the following file: +
    + +
    +Generated by doxygen 1.9.1 +
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    Definition at line 124 of file thermal_conductivity_model.h.

    -

    References PhysicalPropertyModel::model_depends_on, and temperature.

    +

    References PhysicalPropertyModel::model_depends_on, and temperature.

    diff --git a/doxygen/classThermalConductivityModel.html b/doxygen/classThermalConductivityModel.html index ba628ade62..f313867754 100644 --- a/doxygen/classThermalConductivityModel.html +++ b/doxygen/classThermalConductivityModel.html @@ -165,7 +165,7 @@

    Definition at line 20 of file thermal_conductivity_model.cc.

    -

    References Parameters::Material::k_A0, Parameters::Material::k_A1, Parameters::Material::linear, Parameters::Material::phase_change, Parameters::Material::phase_change_parameters, Parameters::Material::thermal_conductivity, and Parameters::Material::thermal_conductivity_model.

    +

    References Parameters::Material::k_A0, Parameters::Material::k_A1, Parameters::Material::linear, Parameters::Material::phase_change, Parameters::Material::phase_change_parameters, Parameters::Material::thermal_conductivity, and Parameters::Material::thermal_conductivity_model.

    diff --git a/doxygen/classThermalConductivityPhaseChange.html b/doxygen/classThermalConductivityPhaseChange.html index 5de75a9e68..3ece4619cd 100644 --- a/doxygen/classThermalConductivityPhaseChange.html +++ b/doxygen/classThermalConductivityPhaseChange.html @@ -174,7 +174,7 @@

    Definition at line 207 of file thermal_conductivity_model.h.

    -

    References PhysicalPropertyModel::model_depends_on, and temperature.

    +

    References PhysicalPropertyModel::model_depends_on, and temperature.

    @@ -227,7 +227,7 @@

    Definition at line 291 of file thermal_conductivity_model.h.

    -

    References PhysicalPropertyModel::numerical_jacobian(), and temperature.

    +

    References PhysicalPropertyModel::numerical_jacobian(), and temperature.

    @@ -326,7 +326,7 @@

    Definition at line 312 of file thermal_conductivity_model.h.

    -

    References temperature, and PhysicalPropertyModel::vector_numerical_jacobian().

    +

    References temperature, and PhysicalPropertyModel::vector_numerical_jacobian().

    diff --git a/doxygen/classThermalExpansionModel.html b/doxygen/classThermalExpansionModel.html index 60ea96aa86..c2f34cb66a 100644 --- a/doxygen/classThermalExpansionModel.html +++ b/doxygen/classThermalExpansionModel.html @@ -164,7 +164,7 @@

    Definition at line 20 of file thermal_expansion_model.cc.

    -

    References Parameters::Material::phase_change, Parameters::Material::phase_change_parameters, Parameters::Material::thermal_expansion, and Parameters::Material::thermal_expansion_model.

    +

    References Parameters::Material::phase_change, Parameters::Material::phase_change_parameters, Parameters::Material::thermal_expansion, and Parameters::Material::thermal_expansion_model.

    diff --git a/doxygen/classThermalExpansionPhaseChange.html b/doxygen/classThermalExpansionPhaseChange.html index ccb5980ed7..38d793f982 100644 --- a/doxygen/classThermalExpansionPhaseChange.html +++ b/doxygen/classThermalExpansionPhaseChange.html @@ -166,7 +166,7 @@

    Definition at line 123 of file thermal_expansion_model.h.

    -

    References PhysicalPropertyModel::model_depends_on, and temperature.

    +

    References PhysicalPropertyModel::model_depends_on, and temperature.

    @@ -219,7 +219,7 @@

    Definition at line 179 of file thermal_expansion_model.h.

    -

    References PhysicalPropertyModel::numerical_jacobian(), and temperature.

    +

    References PhysicalPropertyModel::numerical_jacobian(), and temperature.

    @@ -318,7 +318,7 @@

    Definition at line 200 of file thermal_expansion_model.h.

    -

    References temperature, and PhysicalPropertyModel::vector_numerical_jacobian().

    +

    References temperature, and PhysicalPropertyModel::vector_numerical_jacobian().

    diff --git a/doxygen/classTracer-members.html b/doxygen/classTracer-members.html index a24e273ae6..b4df960adc 100644 --- a/doxygen/classTracer-members.html +++ b/doxygen/classTracer-members.html @@ -107,47 +107,48 @@ get_nonzero_constraints() overrideTracer< dim >inlinevirtual get_present_solution() overrideTracer< dim >inlinevirtual get_system_rhs() overrideTracer< dim >inlinevirtual - local_evaluation_pointTracer< dim >private - locally_owned_dofsTracer< dim >private - locally_relevant_dofsTracer< dim >private - mappingTracer< dim >private - modify_solution()AuxiliaryPhysics< dim, GlobalVectorType >inlinevirtual - multiphysicsTracer< dim >private - newton_updateTracer< dim >private - non_linear_solverPhysicsSolver< VectorType >private - nonzero_constraintsTracer< dim >private - output_newton_update_norms(const unsigned int display_precision) overrideTracer< dim >inlinevirtual - pcoutPhysicsSolver< VectorType > - percolate_time_vectors() overrideTracer< dim >virtual - PhysicsSolver(const Parameters::NonLinearSolver non_linear_solver_parameters)PhysicsSolver< VectorType > - post_mesh_adaptation() overrideTracer< dim >virtual - postprocess(bool first_iteration) overrideTracer< dim >virtual - pre_mesh_adaptation() overrideTracer< dim >virtual - present_solutionTracer< dim >private - previous_solutionsTracer< dim >private - previous_solutions_transferTracer< dim >private - read_checkpoint() overrideTracer< dim >virtual - set_initial_conditions() overrideTracer< dim >virtual - setup_assemblers()Tracer< dim >privatevirtual - setup_dofs() overrideTracer< dim >virtual - setup_preconditioner() overrideAuxiliaryPhysics< dim, GlobalVectorType >inlinevirtual - simulation_controlTracer< dim >private - simulation_parametersTracer< dim >private - solution_transferTracer< dim >private - solve_linear_system(const bool initial_step, const bool renewed_matrix=true) overrideTracer< dim >virtual - solve_non_linear_system(const bool first_iteration)PhysicsSolver< VectorType > - statistics_tableTracer< dim >private - system_matrixTracer< dim >private - system_rhsTracer< dim >private - time_stepping_methodPhysicsSolver< VectorType > - Tracer(MultiphysicsInterface< dim > *multiphysics_interface, const SimulationParameters< dim > &p_simulation_parameters, std::shared_ptr< parallel::DistributedTriangulationBase< dim >> p_triangulation, std::shared_ptr< SimulationControl > p_simulation_control)Tracer< dim >inline - triangulationTracer< dim >private - update_boundary_conditions() overrideTracer< dim >virtual - write_checkpoint() overrideTracer< dim >virtual - write_tracer_statistics()Tracer< dim >private - zero_constraintsTracer< dim >private - ~AuxiliaryPhysics()AuxiliaryPhysics< dim, GlobalVectorType >inlinevirtual - ~PhysicsSolver()PhysicsSolver< VectorType >inlinevirtual + immersed_solid_signed_distance_functionTracer< dim >private + local_evaluation_pointTracer< dim >private + locally_owned_dofsTracer< dim >private + locally_relevant_dofsTracer< dim >private + mappingTracer< dim >private + modify_solution()AuxiliaryPhysics< dim, GlobalVectorType >inlinevirtual + multiphysicsTracer< dim >private + newton_updateTracer< dim >private + non_linear_solverPhysicsSolver< VectorType >private + nonzero_constraintsTracer< dim >private + output_newton_update_norms(const unsigned int display_precision) overrideTracer< dim >inlinevirtual + pcoutPhysicsSolver< VectorType > + percolate_time_vectors() overrideTracer< dim >virtual + PhysicsSolver(const Parameters::NonLinearSolver non_linear_solver_parameters)PhysicsSolver< VectorType > + post_mesh_adaptation() overrideTracer< dim >virtual + postprocess(bool first_iteration) overrideTracer< dim >virtual + pre_mesh_adaptation() overrideTracer< dim >virtual + present_solutionTracer< dim >private + previous_solutionsTracer< dim >private + previous_solutions_transferTracer< dim >private + read_checkpoint() overrideTracer< dim >virtual + set_initial_conditions() overrideTracer< dim >virtual + setup_assemblers()Tracer< dim >privatevirtual + setup_dofs() overrideTracer< dim >virtual + setup_preconditioner() overrideAuxiliaryPhysics< dim, GlobalVectorType >inlinevirtual + simulation_controlTracer< dim >private + simulation_parametersTracer< dim >private + solution_transferTracer< dim >private + solve_linear_system(const bool initial_step, const bool renewed_matrix=true) overrideTracer< dim >virtual + solve_non_linear_system(const bool first_iteration)PhysicsSolver< VectorType > + statistics_tableTracer< dim >private + system_matrixTracer< dim >private + system_rhsTracer< dim >private + time_stepping_methodPhysicsSolver< VectorType > + Tracer(MultiphysicsInterface< dim > *multiphysics_interface, const SimulationParameters< dim > &p_simulation_parameters, std::shared_ptr< parallel::DistributedTriangulationBase< dim >> p_triangulation, std::shared_ptr< SimulationControl > p_simulation_control)Tracer< dim >inline + triangulationTracer< dim >private + update_boundary_conditions() overrideTracer< dim >virtual + write_checkpoint() overrideTracer< dim >virtual + write_tracer_statistics()Tracer< dim >private + zero_constraintsTracer< dim >private + ~AuxiliaryPhysics()AuxiliaryPhysics< dim, GlobalVectorType >inlinevirtual + ~PhysicsSolver()PhysicsSolver< VectorType >inlinevirtual
    diff --git a/doxygen/classTracer.html b/doxygen/classTracer.html index 53945b13f0..79d0e02117 100644 --- a/doxygen/classTracer.html +++ b/doxygen/classTracer.html @@ -227,6 +227,8 @@   TrilinosWrappers::SparseMatrix system_matrix   +std::shared_ptr< Function< dim > > immersed_solid_signed_distance_function +  std::vector< GlobalVectorType > previous_solutions   std::shared_ptr< parallel::distributed::SolutionTransfer< dim, GlobalVectorType > > solution_transfer @@ -303,7 +305,7 @@

    Definition at line 56 of file tracer.h.

    -

    References Tracer< dim >::cell_quadrature, Tracer< dim >::computing_timer, Tracer< dim >::dof_handler, Tracer< dim >::fe, Tracer< dim >::mapping, maximum_number_of_previous_solutions(), Parameters::Timer::none, Tracer< dim >::previous_solutions, Tracer< dim >::previous_solutions_transfer, Tracer< dim >::simulation_parameters, and Tracer< dim >::solution_transfer.

    +

    References Tracer< dim >::cell_quadrature, Tracer< dim >::computing_timer, Tracer< dim >::dof_handler, Tracer< dim >::fe, Tracer< dim >::mapping, maximum_number_of_previous_solutions(), Parameters::Timer::none, Tracer< dim >::previous_solutions, Tracer< dim >::previous_solutions_transfer, Tracer< dim >::simulation_parameters, and Tracer< dim >::solution_transfer.

    @@ -361,9 +363,9 @@

    Definition at line 78 of file tracer.cc.

    +

    Definition at line 83 of file tracer.cc.

    -

    References TracerScratchData< dim >::calculate_physical_properties(), StabilizedMethodsCopyData::cell_is_local, fluid_dynamics, StabilizedMethodsCopyData::local_dof_indices, TracerScratchData< dim >::reinit(), TracerScratchData< dim >::reinit_velocity(), and StabilizedMethodsCopyData::reset().

    +

    References TracerScratchData< dim >::calculate_physical_properties(), StabilizedMethodsCopyData::cell_is_local, fluid_dynamics, StabilizedMethodsCopyData::local_dof_indices, TracerScratchData< dim >::reinit(), TracerScratchData< dim >::reinit_velocity(), and StabilizedMethodsCopyData::reset().

    @@ -419,9 +421,9 @@

    Definition at line 208 of file tracer.cc.

    +

    Definition at line 219 of file tracer.cc.

    -

    References TracerScratchData< dim >::calculate_physical_properties(), StabilizedMethodsCopyData::cell_is_local, fluid_dynamics, StabilizedMethodsCopyData::local_dof_indices, TracerScratchData< dim >::reinit(), TracerScratchData< dim >::reinit_velocity(), and StabilizedMethodsCopyData::reset().

    +

    References TracerScratchData< dim >::calculate_physical_properties(), StabilizedMethodsCopyData::cell_is_local, fluid_dynamics, StabilizedMethodsCopyData::local_dof_indices, TracerScratchData< dim >::reinit(), TracerScratchData< dim >::reinit_velocity(), and StabilizedMethodsCopyData::reset().

    @@ -453,7 +455,7 @@

    Definition at line 47 of file tracer.cc.

    -

    References Tracer< dim >::assemble_local_system_matrix(), Tracer< dim >::copy_local_matrix_to_global_matrix(), and fluid_dynamics.

    +

    References Tracer< dim >::assemble_local_system_matrix(), Tracer< dim >::copy_local_matrix_to_global_matrix(), and fluid_dynamics.

    @@ -483,9 +485,9 @@

    PhysicsSolver< VectorType >.

    -

    Definition at line 176 of file tracer.cc.

    +

    Definition at line 182 of file tracer.cc.

    -

    References Tracer< dim >::assemble_local_system_rhs(), Tracer< dim >::copy_local_rhs_to_global_rhs(), and fluid_dynamics.

    +

    References Tracer< dim >::assemble_local_system_rhs(), Tracer< dim >::copy_local_rhs_to_global_rhs(), and fluid_dynamics.

    @@ -519,7 +521,7 @@

    AuxiliaryPhysics< dim, GlobalVectorType >.

    -

    Definition at line 304 of file tracer.cc.

    +

    Definition at line 316 of file tracer.cc.

    @@ -539,7 +541,7 @@

    Definition at line 311 of file tracer.cc.

    +

    Definition at line 323 of file tracer.cc.

    @@ -567,7 +569,7 @@

    Definition at line 431 of file tracer.cc.

    +

    Definition at line 443 of file tracer.cc.

    References Parameters::verbose.

    @@ -620,7 +622,7 @@

    AuxiliaryPhysics< dim, GlobalVectorType >.

    -

    Definition at line 173 of file tracer.h.

    +

    Definition at line 171 of file tracer.h.

    @@ -652,7 +654,7 @@

    Definition at line 161 of file tracer.cc.

    +

    Definition at line 167 of file tracer.cc.

    References StabilizedMethodsCopyData::cell_is_local, StabilizedMethodsCopyData::local_dof_indices, and StabilizedMethodsCopyData::local_matrix.

    @@ -686,7 +688,7 @@

    Definition at line 290 of file tracer.cc.

    +

    Definition at line 302 of file tracer.cc.

    References StabilizedMethodsCopyData::cell_is_local, StabilizedMethodsCopyData::local_dof_indices, and StabilizedMethodsCopyData::local_rhs.

    @@ -718,7 +720,7 @@

    AuxiliaryPhysics< dim, GlobalVectorType >.

    -

    Definition at line 356 of file tracer.cc.

    +

    Definition at line 368 of file tracer.cc.

    References Parameters::SimulationControl::steady, and Parameters::verbose.

    @@ -753,9 +755,9 @@

    AuxiliaryPhysics< dim, GlobalVectorType >.

    -

    Definition at line 198 of file tracer.h.

    +

    Definition at line 196 of file tracer.h.

    -

    References Tracer< dim >::dof_handler.

    +

    References Tracer< dim >::dof_handler.

    @@ -788,9 +790,9 @@

    PhysicsSolver< VectorType >.

    -

    Definition at line 242 of file tracer.h.

    +

    Definition at line 240 of file tracer.h.

    -

    References Tracer< dim >::evaluation_point.

    +

    References Tracer< dim >::evaluation_point.

    @@ -821,9 +823,9 @@

    PhysicsSolver< VectorType >.

    -

    Definition at line 247 of file tracer.h.

    +

    Definition at line 245 of file tracer.h.

    -

    References Tracer< dim >::local_evaluation_point.

    +

    References Tracer< dim >::local_evaluation_point.

    @@ -854,9 +856,9 @@

    PhysicsSolver< VectorType >.

    -

    Definition at line 252 of file tracer.h.

    +

    Definition at line 250 of file tracer.h.

    -

    References Tracer< dim >::newton_update.

    +

    References Tracer< dim >::newton_update.

    @@ -887,9 +889,9 @@

    PhysicsSolver< VectorType >.

    -

    Definition at line 267 of file tracer.h.

    +

    Definition at line 265 of file tracer.h.

    -

    References Tracer< dim >::nonzero_constraints.

    +

    References Tracer< dim >::nonzero_constraints.

    @@ -920,9 +922,9 @@

    PhysicsSolver< VectorType >.

    -

    Definition at line 257 of file tracer.h.

    +

    Definition at line 255 of file tracer.h.

    -

    References Tracer< dim >::present_solution.

    +

    References Tracer< dim >::present_solution.

    @@ -953,9 +955,9 @@

    PhysicsSolver< VectorType >.

    -

    Definition at line 262 of file tracer.h.

    +

    Definition at line 260 of file tracer.h.

    -

    References Tracer< dim >::system_rhs.

    +

    References Tracer< dim >::system_rhs.

    @@ -995,9 +997,9 @@

    PhysicsSolver< VectorType >.

    -

    Definition at line 279 of file tracer.h.

    +

    Definition at line 277 of file tracer.h.

    -

    References Tracer< dim >::newton_update, and PhysicsSolver< VectorType >::pcout.

    +

    References Tracer< dim >::newton_update, and PhysicsSolver< VectorType >::pcout.

    @@ -1027,7 +1029,7 @@

    AuxiliaryPhysics< dim, GlobalVectorType >.

    -

    Definition at line 383 of file tracer.cc.

    +

    Definition at line 395 of file tracer.cc.

    @@ -1057,7 +1059,7 @@

    AuxiliaryPhysics< dim, GlobalVectorType >.

    -

    Definition at line 554 of file tracer.cc.

    +

    Definition at line 566 of file tracer.cc.

    @@ -1091,7 +1093,7 @@

    AuxiliaryPhysics< dim, GlobalVectorType >.

    -

    Definition at line 394 of file tracer.cc.

    +

    Definition at line 406 of file tracer.cc.

    References announce_string(), calculate_L2_error(), Parameters::Timer::iteration, and Parameters::verbose.

    @@ -1123,7 +1125,7 @@

    AuxiliaryPhysics< dim, GlobalVectorType >.

    -

    Definition at line 541 of file tracer.cc.

    +

    Definition at line 553 of file tracer.cc.

    @@ -1153,7 +1155,7 @@

    AuxiliaryPhysics< dim, GlobalVectorType >.

    -

    Definition at line 616 of file tracer.cc.

    +

    Definition at line 628 of file tracer.cc.

    References deserialize_table().

    @@ -1185,7 +1187,7 @@

    AuxiliaryPhysics< dim, GlobalVectorType >.

    -

    Definition at line 803 of file tracer.cc.

    +

    Definition at line 815 of file tracer.cc.

    @@ -1245,7 +1247,7 @@

    AuxiliaryPhysics< dim, GlobalVectorType >.

    -

    Definition at line 662 of file tracer.cc.

    +

    Definition at line 674 of file tracer.cc.

    References tracer, and BoundaryConditions::tracer_dirichlet.

    @@ -1298,7 +1300,7 @@

    PhysicsSolver< VectorType >.

    -

    Definition at line 816 of file tracer.cc.

    +

    Definition at line 828 of file tracer.cc.

    References Parameters::quiet, and tracer.

    @@ -1330,7 +1332,7 @@

    AuxiliaryPhysics< dim, GlobalVectorType >.

    -

    Definition at line 767 of file tracer.cc.

    +

    Definition at line 779 of file tracer.cc.

    References BoundaryConditions::tracer_dirichlet.

    @@ -1362,7 +1364,7 @@

    AuxiliaryPhysics< dim, GlobalVectorType >.

    -

    Definition at line 583 of file tracer.cc.

    +

    Definition at line 595 of file tracer.cc.

    References serialize_table().

    @@ -1392,7 +1394,7 @@

    Definition at line 523 of file tracer.cc.

    +

    Definition at line 535 of file tracer.cc.

    @@ -1445,7 +1447,7 @@

    -

    Definition at line 393 of file tracer.h.

    +

    Definition at line 391 of file tracer.h.

    @@ -1471,7 +1473,7 @@

    -

    Definition at line 379 of file tracer.h.

    +

    Definition at line 377 of file tracer.h.

    @@ -1497,7 +1499,7 @@

    -

    Definition at line 387 of file tracer.h.

    +

    Definition at line 385 of file tracer.h.

    @@ -1523,7 +1525,7 @@

    -

    Definition at line 396 of file tracer.h.

    +

    Definition at line 394 of file tracer.h.

    @@ -1549,7 +1551,7 @@

    -

    Definition at line 402 of file tracer.h.

    +

    Definition at line 400 of file tracer.h.

    @@ -1575,7 +1577,33 @@

    -

    Definition at line 390 of file tracer.h.

    +

    Definition at line 388 of file tracer.h.

    + + + + +

    ◆ immersed_solid_signed_distance_function

    + +
    +
    +
    +template<int dim>
    + + + + + +
    + + + + +
    std::shared_ptr<Function<dim> > Tracer< dim >::immersed_solid_signed_distance_function
    +     		+private
    +
    + +

    Definition at line 410 of file tracer.h.

    @@ -1601,7 +1629,7 @@

    -

    Definition at line 403 of file tracer.h.

    +

    Definition at line 401 of file tracer.h.

    @@ -1627,7 +1655,7 @@

    -

    Definition at line 399 of file tracer.h.

    +

    Definition at line 397 of file tracer.h.

    @@ -1653,7 +1681,7 @@

    -

    Definition at line 400 of file tracer.h.

    +

    Definition at line 398 of file tracer.h.

    @@ -1679,7 +1707,7 @@

    -

    Definition at line 392 of file tracer.h.

    +

    Definition at line 390 of file tracer.h.

    @@ -1705,7 +1733,7 @@

    -

    Definition at line 377 of file tracer.h.

    +

    Definition at line 375 of file tracer.h.

    @@ -1731,7 +1759,7 @@

    -

    Definition at line 404 of file tracer.h.

    +

    Definition at line 402 of file tracer.h.

    @@ -1757,7 +1785,7 @@

    -

    Definition at line 407 of file tracer.h.

    +

    Definition at line 405 of file tracer.h.

    @@ -1783,7 +1811,7 @@

    -

    Definition at line 405 of file tracer.h.

    +

    Definition at line 403 of file tracer.h.

    @@ -1861,7 +1889,7 @@

    -

    Definition at line 386 of file tracer.h.

    +

    Definition at line 384 of file tracer.h.

    @@ -1887,7 +1915,7 @@

    -

    Definition at line 381 of file tracer.h.

    +

    Definition at line 379 of file tracer.h.

    @@ -1965,7 +1993,7 @@

    -

    Definition at line 409 of file tracer.h.

    +

    Definition at line 407 of file tracer.h.

    @@ -1991,7 +2019,7 @@

    -

    Definition at line 406 of file tracer.h.

    +

    Definition at line 404 of file tracer.h.

    @@ -2017,7 +2045,7 @@

    -

    Definition at line 385 of file tracer.h.

    +

    Definition at line 383 of file tracer.h.

    @@ -2043,7 +2071,7 @@

    -

    Definition at line 408 of file tracer.h.

    +

    Definition at line 406 of file tracer.h.

    diff --git a/doxygen/classTracerAssemblerBDF.html b/doxygen/classTracerAssemblerBDF.html index e1bbdff568..5dfa6b0bdd 100644 --- a/doxygen/classTracerAssemblerBDF.html +++ b/doxygen/classTracerAssemblerBDF.html @@ -199,7 +199,7 @@

    Definition at line 220 of file tracer_assemblers.cc.

    -

    References TracerScratchData< dim >::JxW, StabilizedMethodsCopyData::local_matrix, TracerScratchData< dim >::n_dofs, TracerScratchData< dim >::n_q_points, number_of_previous_solutions(), TracerScratchData< dim >::phi, TracerScratchData< dim >::previous_tracer_values, StabilizedMethodsCopyData::strong_jacobian, StabilizedMethodsCopyData::strong_residual, tracer, and TracerScratchData< dim >::tracer_values.

    +

    References TracerScratchData< dim >::JxW, StabilizedMethodsCopyData::local_matrix, TracerScratchData< dim >::n_dofs, TracerScratchData< dim >::n_q_points, number_of_previous_solutions(), TracerScratchData< dim >::phi, TracerScratchData< dim >::previous_tracer_values, StabilizedMethodsCopyData::strong_jacobian, StabilizedMethodsCopyData::strong_residual, tracer, and TracerScratchData< dim >::tracer_values.

    @@ -252,7 +252,7 @@

    Definition at line 274 of file tracer_assemblers.cc.

    -

    References TracerScratchData< dim >::JxW, StabilizedMethodsCopyData::local_rhs, TracerScratchData< dim >::n_dofs, TracerScratchData< dim >::n_q_points, number_of_previous_solutions(), TracerScratchData< dim >::phi, TracerScratchData< dim >::previous_tracer_values, StabilizedMethodsCopyData::strong_residual, tracer, and TracerScratchData< dim >::tracer_values.

    +

    References TracerScratchData< dim >::JxW, StabilizedMethodsCopyData::local_rhs, TracerScratchData< dim >::n_dofs, TracerScratchData< dim >::n_q_points, number_of_previous_solutions(), TracerScratchData< dim >::phi, TracerScratchData< dim >::previous_tracer_values, StabilizedMethodsCopyData::strong_residual, tracer, and TracerScratchData< dim >::tracer_values.

    diff --git a/doxygen/classTracerAssemblerCore.html b/doxygen/classTracerAssemblerCore.html index b9331ee361..8f85a40b93 100644 --- a/doxygen/classTracerAssemblerCore.html +++ b/doxygen/classTracerAssemblerCore.html @@ -199,7 +199,7 @@

    Definition at line 10 of file tracer_assemblers.cc.

    -

    References TracerScratchData< dim >::cell_size, TracerScratchData< dim >::fe_values_tracer, TracerScratchData< dim >::grad_phi, is_steady(), TracerScratchData< dim >::JxW, TracerScratchData< dim >::laplacian_phi, StabilizedMethodsCopyData::local_matrix, TracerScratchData< dim >::n_dofs, TracerScratchData< dim >::n_q_points, TracerScratchData< dim >::phi, StabilizedMethodsCopyData::strong_jacobian, TracerScratchData< dim >::tracer_diffusivity, TracerScratchData< dim >::tracer_gradients, velocity, and TracerScratchData< dim >::velocity_values.

    +

    References TracerScratchData< dim >::cell_size, TracerScratchData< dim >::fe_values_tracer, TracerScratchData< dim >::grad_phi, is_steady(), TracerScratchData< dim >::JxW, TracerScratchData< dim >::laplacian_phi, StabilizedMethodsCopyData::local_matrix, TracerScratchData< dim >::n_dofs, TracerScratchData< dim >::n_q_points, TracerScratchData< dim >::phi, StabilizedMethodsCopyData::strong_jacobian, TracerScratchData< dim >::tracer_diffusivity, TracerScratchData< dim >::tracer_gradients, velocity, and TracerScratchData< dim >::velocity_values.

    @@ -252,7 +252,7 @@

    Definition at line 124 of file tracer_assemblers.cc.

    -

    References TracerScratchData< dim >::cell_size, TracerScratchData< dim >::fe_values_tracer, TracerScratchData< dim >::grad_phi, is_steady(), TracerScratchData< dim >::JxW, StabilizedMethodsCopyData::local_rhs, TracerScratchData< dim >::n_dofs, TracerScratchData< dim >::n_q_points, TracerScratchData< dim >::phi, TracerScratchData< dim >::source, StabilizedMethodsCopyData::strong_residual, TracerScratchData< dim >::tracer_diffusivity, TracerScratchData< dim >::tracer_gradients, TracerScratchData< dim >::tracer_laplacians, velocity, and TracerScratchData< dim >::velocity_values.

    +

    References TracerScratchData< dim >::cell_size, TracerScratchData< dim >::fe_values_tracer, TracerScratchData< dim >::grad_phi, is_steady(), TracerScratchData< dim >::JxW, StabilizedMethodsCopyData::local_rhs, TracerScratchData< dim >::n_dofs, TracerScratchData< dim >::n_q_points, TracerScratchData< dim >::phi, TracerScratchData< dim >::source, StabilizedMethodsCopyData::strong_residual, TracerScratchData< dim >::tracer_diffusivity, TracerScratchData< dim >::tracer_gradients, TracerScratchData< dim >::tracer_laplacians, velocity, and TracerScratchData< dim >::velocity_values.

    diff --git a/doxygen/classTracerDiffusivityModel.html b/doxygen/classTracerDiffusivityModel.html index ad06906a5f..c8f3a75b3d 100644 --- a/doxygen/classTracerDiffusivityModel.html +++ b/doxygen/classTracerDiffusivityModel.html @@ -85,9 +85,10 @@
    Inheritance graph
    - + - + +
    [legend]
    @@ -163,7 +164,7 @@

    Definition at line 20 of file tracer_diffusivity_model.cc.

    -

    References Parameters::Material::tracer_diffusivity.

    +

    References Parameters::Material::immersed_boundary_tanh, Parameters::Material::immersed_solid_tanh_parameters, Parameters::ImmersedSolidTanhParameters::thickness, Parameters::Material::tracer_diffusivity, Parameters::ImmersedSolidTanhParameters::tracer_diffusivity_inside, Parameters::Material::tracer_diffusivity_model, and Parameters::ImmersedSolidTanhParameters::tracer_diffusivity_outside.

    diff --git a/doxygen/classTracerDiffusivityModel__inherit__graph.map b/doxygen/classTracerDiffusivityModel__inherit__graph.map index 6f8e4fb3bd..db172fce27 100644 --- a/doxygen/classTracerDiffusivityModel__inherit__graph.map +++ b/doxygen/classTracerDiffusivityModel__inherit__graph.map @@ -1,5 +1,6 @@ - + - + + diff --git a/doxygen/classTracerDiffusivityModel__inherit__graph.md5 b/doxygen/classTracerDiffusivityModel__inherit__graph.md5 index 2b3ded4047..6712cfdc4c 100644 --- a/doxygen/classTracerDiffusivityModel__inherit__graph.md5 +++ b/doxygen/classTracerDiffusivityModel__inherit__graph.md5 @@ -1 +1 @@ -c93f177ab042425945ffd16189c02e4f \ No newline at end of file +0e518c475f1ea54e2df45da209d68f46 \ No newline at end of file diff --git a/doxygen/classTracerDiffusivityModel__inherit__graph.png b/doxygen/classTracerDiffusivityModel__inherit__graph.png index 076e64d6d03bcd92977543f75162e1c9747b3475..da4c12c5fbdd5ed2fe1e17a12baeab8b03c5e397 100644 GIT binary patch literal 10054 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z3R6drnxv$qS%EuGpHSLfUWth-Yy5XttE=w-GnwyYob@;s7INZtl%yE>w;D%Gj6C}rlX_#f<|A0L7U#QHx`v|wc{JpCmJ&1 zNHYF28U7bMy%8^#-Ce$#8Xv?iC|EL3rk`=Y?}y!sQ^oNgb`>x+K4DDP#bn90rJj>%z<%xuvA3SR`-p=sy5ps3o!h diff --git a/doxygen/classTracerScratchData-members.html b/doxygen/classTracerScratchData-members.html index b4fe23878a..5f0cac1fbf 100644 --- a/doxygen/classTracerScratchData-members.html +++ b/doxygen/classTracerScratchData-members.html @@ -94,19 +94,20 @@

    - + - - - - - - - - - - - + + + + + + + + + + + +
    previous_tracer_valuesTracerScratchData< dim >
    properties_managerTracerScratchData< dim >
    quadrature_pointsTracerScratchData< dim >
    reinit(const typename DoFHandler< dim >::active_cell_iterator &cell, const VectorType &current_solution, const std::vector< VectorType > &previous_solutions, Function< dim > *source_function)TracerScratchData< dim >inline
    reinit(const typename DoFHandler< dim >::active_cell_iterator &cell, const VectorType &current_solution, const std::vector< VectorType > &previous_solutions, const Function< dim > *source_function, const Function< dim > *levelset_function)TracerScratchData< dim >inline
    reinit_velocity(const typename DoFHandler< dim >::active_cell_iterator &cell, const VectorType &current_solution, const Parameters::ALE< dim > &ale, std::shared_ptr< Functions::ParsedFunction< dim >> drift_velocity)TracerScratchData< dim >inline
    sourceTracerScratchData< dim >
    tracer_diffusivityTracerScratchData< dim >
    tracer_diffusivity_0TracerScratchData< dim >
    tracer_diffusivity_1TracerScratchData< dim >
    tracer_gradientsTracerScratchData< dim >
    tracer_laplaciansTracerScratchData< dim >
    tracer_valuesTracerScratchData< dim >
    TracerScratchData(const PhysicalPropertiesManager &properties_manager, const FiniteElement< dim > &fe_tracer, const Quadrature< dim > &quadrature, const Mapping< dim > &mapping, const FiniteElement< dim > &fe_fd)TracerScratchData< dim >inline
    TracerScratchData(const TracerScratchData< dim > &sd)TracerScratchData< dim >inline
    velocitiesTracerScratchData< dim >
    velocity_valuesTracerScratchData< dim >
    sdf_valuesTracerScratchData< dim >
    sourceTracerScratchData< dim >
    tracer_diffusivityTracerScratchData< dim >
    tracer_diffusivity_0TracerScratchData< dim >
    tracer_diffusivity_1TracerScratchData< dim >
    tracer_gradientsTracerScratchData< dim >
    tracer_laplaciansTracerScratchData< dim >
    tracer_valuesTracerScratchData< dim >
    TracerScratchData(const PhysicalPropertiesManager &properties_manager, const FiniteElement< dim > &fe_tracer, const Quadrature< dim > &quadrature, const Mapping< dim > &mapping, const FiniteElement< dim > &fe_fd)TracerScratchData< dim >inline
    TracerScratchData(const TracerScratchData< dim > &sd)TracerScratchData< dim >inline
    velocitiesTracerScratchData< dim >
    velocity_valuesTracerScratchData< dim >
    diff --git a/doxygen/classTracerScratchData.html b/doxygen/classTracerScratchData.html index e655caa906..7227c0c6b3 100644 --- a/doxygen/classTracerScratchData.html +++ b/doxygen/classTracerScratchData.html @@ -90,9 +90,9 @@   void allocate ()   -template<typename VectorType > -void reinit (const typename DoFHandler< dim >::active_cell_iterator &cell, const VectorType &current_solution, const std::vector< VectorType > &previous_solutions, Function< dim > *source_function) -  +template<typename VectorType > +void reinit (const typename DoFHandler< dim >::active_cell_iterator &cell, const VectorType &current_solution, const std::vector< VectorType > &previous_solutions, const Function< dim > *source_function, const Function< dim > *levelset_function) +  template<typename VectorType > void reinit_velocity (const typename DoFHandler< dim >::active_cell_iterator &cell, const VectorType &current_solution, const Parameters::ALE< dim > &ale, std::shared_ptr< Functions::ParsedFunction< dim >> drift_velocity)   @@ -131,6 +131,8 @@   std::vector< std::vector< double > > previous_tracer_values   +std::vector< double > sdf_values +  std::vector< double > source   std::vector< std::vector< double > > phi @@ -290,7 +292,7 @@

    Definition at line 7 of file tracer_scratch_data.cc.

    -

    References maximum_number_of_previous_solutions().

    +

    References levelset, and maximum_number_of_previous_solutions().

    @@ -310,12 +312,14 @@

    This function calculates the physical properties that may be required by the tracer. Namely the diffusivity.

    -

    Definition at line 52 of file tracer_scratch_data.cc.

    +

    Definition at line 59 of file tracer_scratch_data.cc.

    + +

    References levelset, and set_field_vector().

    - -

    ◆ reinit()

    + +

    ◆ reinit()

    @@ -348,8 +352,14 @@

    - Function< dim > *  - source_function  + const Function< dim > *  + source_function, + + + + + const Function< dim > *  + levelset_function  @@ -365,19 +375,22 @@

    Reinitialize the content of the scratch.

    -

    Using the FeValues and the content ofthe solutions and previous solutions, fills all of the class member of the scratch

    +

    Using the FeValues and the content of the solutions and previous solutions, fills all of the class member of the scratch

    Parameters
    - + +
    cellThe cell over which the assembly is being carried. This cell must be compatible with the fe which is used to fill the FeValues
    current_solutionThe present value of the solution for [u,p]
    previous_solutionsThe solutions at the previous time steps
    source_functionThe function describing the tracer source term
    source_functionThe function describing the tracer source term
    levelset_functionThe function describing the particles (if there are any)

    Definition at line 150 of file tracer_scratch_data.h.

    +

    References levelset.

    +

    @@ -447,7 +460,7 @@

    Definition at line 216 of file tracer_scratch_data.h.

    +

    Definition at line 219 of file tracer_scratch_data.h.

    References Parameters::ALE< dim >::enabled(), and Parameters::ALE< dim >::velocity.

    @@ -468,7 +481,7 @@

    -

    Definition at line 283 of file tracer_scratch_data.h.

    +

    Definition at line 286 of file tracer_scratch_data.h.

    @@ -486,7 +499,7 @@

    -

    Definition at line 310 of file tracer_scratch_data.h.

    +

    Definition at line 316 of file tracer_scratch_data.h.

    @@ -504,7 +517,7 @@

    -

    Definition at line 280 of file tracer_scratch_data.h.

    +

    Definition at line 283 of file tracer_scratch_data.h.

    @@ -522,7 +535,7 @@

    -

    Definition at line 272 of file tracer_scratch_data.h.

    +

    Definition at line 275 of file tracer_scratch_data.h.

    @@ -540,7 +553,7 @@

    -

    Definition at line 302 of file tracer_scratch_data.h.

    +

    Definition at line 308 of file tracer_scratch_data.h.

    @@ -558,7 +571,7 @@

    -

    Definition at line 300 of file tracer_scratch_data.h.

    +

    Definition at line 306 of file tracer_scratch_data.h.

    @@ -576,7 +589,7 @@

    -

    Definition at line 286 of file tracer_scratch_data.h.

    +

    Definition at line 289 of file tracer_scratch_data.h.

    @@ -594,7 +607,7 @@

    -

    Definition at line 301 of file tracer_scratch_data.h.

    +

    Definition at line 307 of file tracer_scratch_data.h.

    @@ -612,7 +625,7 @@

    -

    Definition at line 281 of file tracer_scratch_data.h.

    +

    Definition at line 284 of file tracer_scratch_data.h.

    @@ -630,7 +643,7 @@

    -

    Definition at line 282 of file tracer_scratch_data.h.

    +

    Definition at line 285 of file tracer_scratch_data.h.

    @@ -648,7 +661,7 @@

    -

    Definition at line 299 of file tracer_scratch_data.h.

    +

    Definition at line 305 of file tracer_scratch_data.h.

    @@ -666,7 +679,7 @@

    -

    Definition at line 293 of file tracer_scratch_data.h.

    +

    Definition at line 296 of file tracer_scratch_data.h.

    @@ -684,7 +697,7 @@

    -

    Definition at line 271 of file tracer_scratch_data.h.

    +

    Definition at line 274 of file tracer_scratch_data.h.

    @@ -702,7 +715,25 @@

    -

    Definition at line 287 of file tracer_scratch_data.h.

    +

    Definition at line 290 of file tracer_scratch_data.h.

    + + + + +

    ◆ sdf_values

    + +
    +
    +
    +template<int dim>
    + + + + +
    std::vector<double> TracerScratchData< dim >::sdf_values
    +
    + +

    Definition at line 299 of file tracer_scratch_data.h.

    @@ -720,7 +751,7 @@

    -

    Definition at line 296 of file tracer_scratch_data.h.

    +

    Definition at line 302 of file tracer_scratch_data.h.

    @@ -738,7 +769,7 @@

    -

    Definition at line 273 of file tracer_scratch_data.h.

    +

    Definition at line 276 of file tracer_scratch_data.h.

    @@ -756,7 +787,7 @@

    -

    Definition at line 274 of file tracer_scratch_data.h.

    +

    Definition at line 277 of file tracer_scratch_data.h.

    @@ -774,7 +805,7 @@

    -

    Definition at line 275 of file tracer_scratch_data.h.

    +

    Definition at line 278 of file tracer_scratch_data.h.

    @@ -792,7 +823,7 @@

    -

    Definition at line 291 of file tracer_scratch_data.h.

    +

    Definition at line 294 of file tracer_scratch_data.h.

    @@ -810,7 +841,7 @@

    -

    Definition at line 292 of file tracer_scratch_data.h.

    +

    Definition at line 295 of file tracer_scratch_data.h.

    @@ -828,7 +859,7 @@

    -

    Definition at line 290 of file tracer_scratch_data.h.

    +

    Definition at line 293 of file tracer_scratch_data.h.

    @@ -847,7 +878,7 @@

    Scratch component for the Navier-Stokes component

    -

    Definition at line 308 of file tracer_scratch_data.h.

    +

    Definition at line 314 of file tracer_scratch_data.h.

    @@ -865,7 +896,7 @@

    -

    Definition at line 311 of file tracer_scratch_data.h.

    +

    Definition at line 317 of file tracer_scratch_data.h.

    diff --git a/doxygen/classVolumeOfFluid.html b/doxygen/classVolumeOfFluid.html index 33640c61e7..a42fca63b2 100644 --- a/doxygen/classVolumeOfFluid.html +++ b/doxygen/classVolumeOfFluid.html @@ -1144,7 +1144,7 @@

    Definition at line 611 of file vof.cc.

    -

    References Parameters::fluid0, Parameters::fluid1, fluid_dynamics, pressure, set_field_vector(), and velocity.

    +

    References Parameters::fluid0, Parameters::fluid1, fluid_dynamics, pressure, set_field_vector(), and velocity.

    @@ -1196,7 +1196,7 @@

    Definition at line 507 of file vof.cc.

    -

    References Parameters::fluid0, Parameters::fluid1, fluid_dynamics, pressure, and set_field_vector().

    +

    References Parameters::fluid0, Parameters::fluid1, fluid_dynamics, pressure, and set_field_vector().

    diff --git a/doxygen/classes.html b/doxygen/classes.html index 4810922713..fa78ca0333 100644 --- a/doxygen/classes.html +++ b/doxygen/classes.html @@ -103,7 +103,7 @@
    hash_cell (LetheGridTools)
    HeatFluxPostprocessor
    HeatTransfer
    HeatTransferAssemblerBase
    HeatTransferAssemblerBDF
    HeatTransferAssemblerCore
    HeatTransferAssemblerFreeSurfaceRadiationVOF
    HeatTransferAssemblerLaserExponentialDecay
    HeatTransferAssemblerLaserExponentialDecayVOF
    HeatTransferAssemblerLaserGaussianHeatFluxVOFInterface
    HeatTransferAssemblerLaserUniformHeatFluxVOFInterface
    HeatTransferAssemblerRobinBC
    HeatTransferAssemblerViscousDissipation
    HeatTransferAssemblerViscousDissipationVOF
    HeatTransferAssemblerVOFEvaporation
    HeatTransferScratchData
    HTBoundaryConditions (BoundaryConditions)
    HyperRectangle
    I
    -
    IBParticle
    IBParticles (Parameters)
    IBParticlesDEM
    IBStencil
    InexactNewtonNonLinearSolver
    InitialConditions (Parameters)
    Insertion
    InsertionFile
    InsertionInfo (Parameters::Lagrangian)
    InsertionList
    InsertionPlane
    InsertionVolume
    Integrator
    InterfacePropertyModel
    IsothermalIdealGasDensityParameters (Parameters)
    +
    IBParticle
    IBParticles (Parameters)
    IBParticlesDEM
    IBStencil
    ImmersedSolidTanhParameters (Parameters)
    InexactNewtonNonLinearSolver
    InitialConditions (Parameters)
    Insertion
    InsertionFile
    InsertionInfo (Parameters::Lagrangian)
    InsertionList
    InsertionPlane
    InsertionVolume
    Integrator
    InterfacePropertyModel
    IsothermalIdealGasDensityParameters (Parameters)
    K
    KinematicViscosityPostprocessor
    KinsolNewtonNonLinearSolver
    @@ -133,7 +133,7 @@
    ScalarFunctionPostprocessor
    SerialSolid
    Shape
    ShearRatePostprocessor
    SimulationControl (Parameters)
    SimulationControl
    SimulationControlAdjointSteady
    SimulationControlSteady
    SimulationControlTransient
    SimulationControlTransientDEM
    SimulationControlTransientDynamicOutput
    SimulationParameters
    SizeOfSubsections (Parameters)
    SolidBase
    SourceTerm (SourceTerms)
    SpecificHeatModel
    Sphere
    SRFPostprocessor
    Stabilization (Parameters)
    StabilizedMethodsCopyData
    StabilizedMethodsTensorCopyData
    StasisConstraintWithTemperature
    statistics
    Superquadric
    SurfaceTensionConstant
    SurfaceTensionLinear
    SurfaceTensionModel
    SurfaceTensionParameters (Parameters)
    SurfaceTensionPhaseChange
    T
    -
    Testing (Parameters)
    ThermalConductivityLinear
    ThermalConductivityModel
    ThermalConductivityPhaseChange
    ThermalExpansionModel
    ThermalExpansionPhaseChange
    This
    Timer (Parameters)
    Torus
    Tracer
    TracerAssemblerBase
    TracerAssemblerBDF
    TracerAssemblerCore
    TracerBoundaryConditions (BoundaryConditions)
    TracerDiffusivityModel
    TracerDriftVelocity (Parameters)
    TracerScratchData
    +
    TanhLevelsetTracerDiffusivity
    Testing (Parameters)
    ThermalConductivityLinear
    ThermalConductivityModel
    ThermalConductivityPhaseChange
    ThermalExpansionModel
    ThermalExpansionPhaseChange
    This
    Timer (Parameters)
    Torus
    Tracer
    TracerAssemblerBase
    TracerAssemblerBDF
    TracerAssemblerCore
    TracerBoundaryConditions (BoundaryConditions)
    TracerDiffusivityModel
    TracerDriftVelocity (Parameters)
    TracerScratchData
    U
    UniformDistribution
    UniformInsertion
    diff --git a/doxygen/dem__solver__parameters_8h_source.html b/doxygen/dem__solver__parameters_8h_source.html index ecc88e9d9c..f72003c810 100644 --- a/doxygen/dem__solver__parameters_8h_source.html +++ b/doxygen/dem__solver__parameters_8h_source.html @@ -216,19 +216,19 @@
    Parameters::Lagrangian::ModelParameters::declare_parameters
    static void declare_parameters(ParameterHandler &prm)
    Definition: parameters_lagrangian.cc:571
    -
    Parameters::Mesh
    Mesh - Parameters that control mesh reading and mesh generation.
    Definition: parameters.h:1211
    -
    Parameters::Mesh::declare_parameters
    static void declare_parameters(ParameterHandler &prm)
    Definition: parameters.cc:2107
    -
    Parameters::Mesh::parse_parameters
    void parse_parameters(ParameterHandler &prm)
    Definition: parameters.cc:2209
    -
    Parameters::Restart
    Restart - Controls writing and reading simulation checkpoints.
    Definition: parameters.h:1387
    -
    Parameters::Restart::parse_parameters
    void parse_parameters(ParameterHandler &prm)
    Definition: parameters.cc:2880
    -
    Parameters::Restart::declare_parameters
    static void declare_parameters(ParameterHandler &prm)
    Definition: parameters.cc:2852
    +
    Parameters::Mesh
    Mesh - Parameters that control mesh reading and mesh generation.
    Definition: parameters.h:1237
    +
    Parameters::Mesh::declare_parameters
    static void declare_parameters(ParameterHandler &prm)
    Definition: parameters.cc:2166
    +
    Parameters::Mesh::parse_parameters
    void parse_parameters(ParameterHandler &prm)
    Definition: parameters.cc:2268
    +
    Parameters::Restart
    Restart - Controls writing and reading simulation checkpoints.
    Definition: parameters.h:1413
    +
    Parameters::Restart::parse_parameters
    void parse_parameters(ParameterHandler &prm)
    Definition: parameters.cc:2939
    +
    Parameters::Restart::declare_parameters
    static void declare_parameters(ParameterHandler &prm)
    Definition: parameters.cc:2911
    Parameters::SimulationControl
    SimulationControl - Defines the parameter that control the flow of the simulation as well as the freq...
    Definition: parameters.h:87
    Parameters::SimulationControl::declare_parameters
    static void declare_parameters(ParameterHandler &prm)
    Definition: parameters.cc:72
    Parameters::SimulationControl::parse_parameters
    void parse_parameters(ParameterHandler &prm)
    Definition: parameters.cc:185
    -
    Parameters::Testing
    Testing - Some solvers have a specific testing mode that can be enabled to output more variables to t...
    Definition: parameters.h:1364
    -
    Parameters::Testing::declare_parameters
    static void declare_parameters(ParameterHandler &prm)
    Definition: parameters.cc:2805
    -
    Parameters::Testing::parse_parameters
    void parse_parameters(ParameterHandler &prm)
    Definition: parameters.cc:2828
    -
    Parameters::Timer
    Timer - Defines the parameters that control the timing of the simulation. Lethe supports advanced tim...
    Definition: parameters.h:634
    +
    Parameters::Testing
    Testing - Some solvers have a specific testing mode that can be enabled to output more variables to t...
    Definition: parameters.h:1390
    +
    Parameters::Testing::declare_parameters
    static void declare_parameters(ParameterHandler &prm)
    Definition: parameters.cc:2864
    +
    Parameters::Testing::parse_parameters
    void parse_parameters(ParameterHandler &prm)
    Definition: parameters.cc:2887
    +
    Parameters::Timer
    Timer - Defines the parameters that control the timing of the simulation. Lethe supports advanced tim...
    Definition: parameters.h:660
    Parameters::Timer::declare_parameters
    static void declare_parameters(ParameterHandler &prm)
    Definition: parameters.cc:255
    Parameters::Timer::parse_parameters
    void parse_parameters(ParameterHandler &prm)
    Definition: parameters.cc:274
    diff --git a/doxygen/density__model_8cc_source.html b/doxygen/density__model_8cc_source.html index 74693305b4..d6974ce957 100644 --- a/doxygen/density__model_8cc_source.html +++ b/doxygen/density__model_8cc_source.html @@ -114,15 +114,15 @@
    33  }
    34 }
    DensityModel::model_cast
    static std::shared_ptr< DensityModel > model_cast(const Parameters::Material &material_properties)
    Instantiate and return a pointer to a DensityModel object by casting it to the proper child class.
    Definition: density_model.cc:20
    -
    Parameters::Material
    Material - Class that defines the physical property of a material. Generally a material will be a flu...
    Definition: parameters.h:367
    +
    Parameters::Material
    Material - Class that defines the physical property of a material. Generally a material will be a flu...
    Definition: parameters.h:382
    Parameters::Material::density_model
    enum Parameters::Material::DensityModel density_model
    -
    Parameters::Material::isothermal_ideal_gas_density_parameters
    IsothermalIdealGasDensityParameters isothermal_ideal_gas_density_parameters
    Definition: parameters.h:413
    - +
    Parameters::Material::isothermal_ideal_gas_density_parameters
    IsothermalIdealGasDensityParameters isothermal_ideal_gas_density_parameters
    Definition: parameters.h:429
    +
    density_model.h
    - - - + + +
    diff --git a/doxygen/density__model_8h_source.html b/doxygen/density__model_8h_source.html index c3a86bdf8f..7bb59395e0 100644 --- a/doxygen/density__model_8h_source.html +++ b/doxygen/density__model_8h_source.html @@ -479,9 +479,9 @@
    DensityModel::model_cast
    static std::shared_ptr< DensityModel > model_cast(const Parameters::Material &material_properties)
    Instantiate and return a pointer to a DensityModel object by casting it to the proper child class.
    Definition: density_model.cc:20
    DensityModel::get_density_ref
    virtual double get_density_ref() const =0
    Get the value of the reference state density used in the density model.
    DensityModel::get_psi
    virtual double get_psi() const =0
    Get the value of the compressibility factor used in the density model.
    -
    Parameters::Material
    Material - Class that defines the physical property of a material. Generally a material will be a flu...
    Definition: parameters.h:367
    -
    PhysicalPropertyModel
    Abstract class that defines the interface for a physical property model Physical property model provi...
    Definition: physical_property_model.h:86
    -
    PhysicalPropertyModel::model_depends_on
    std::map< field, bool > model_depends_on
    Definition: physical_property_model.h:239
    +
    Parameters::Material
    Material - Class that defines the physical property of a material. Generally a material will be a flu...
    Definition: parameters.h:382
    +
    PhysicalPropertyModel
    Abstract class that defines the interface for a physical property model Physical property model provi...
    Definition: physical_property_model.h:87
    +
    PhysicalPropertyModel::model_depends_on
    std::map< field, bool > model_depends_on
    Definition: physical_property_model.h:241
    Variable::pressure
    @ pressure
    Pressure scalar field from fluid dynamics.
    physical_property_model.h
    field
    field
    Definition: physical_property_model.h:51
    diff --git a/doxygen/evaporation__model_8cc_source.html b/doxygen/evaporation__model_8cc_source.html index 3b33ce2a77..53ee4851f5 100644 --- a/doxygen/evaporation__model_8cc_source.html +++ b/doxygen/evaporation__model_8cc_source.html @@ -111,8 +111,8 @@
    30 }
    EvaporationModel::model_cast
    static std::shared_ptr< EvaporationModel > model_cast(const Parameters::Evaporation &evaporation_parameters)
    Instantiates and returns a pointer to an EvaporationModel object by casting it to the proper child cl...
    Definition: evaporation_model.cc:20
    evaporation_model.h
    -
    Parameters::Evaporation
    Evaporation - Defines the subparameters for the evaporation cooling and recoil pressure at the free s...
    Definition: parameters.h:1591
    - +
    Parameters::Evaporation
    Evaporation - Defines the subparameters for the evaporation cooling and recoil pressure at the free s...
    Definition: parameters.h:1617
    +
    Parameters::Evaporation::evaporative_mass_flux_model_type
    enum Parameters::Evaporation::EvaporativeMassFluxModelType evaporative_mass_flux_model_type
    diff --git a/doxygen/evaporation__model_8h_source.html b/doxygen/evaporation__model_8h_source.html index af342eb693..c76a0fd1fb 100644 --- a/doxygen/evaporation__model_8h_source.html +++ b/doxygen/evaporation__model_8h_source.html @@ -890,7 +890,7 @@
    field
    field
    Definition: physical_property_model.h:51
    pressure
    @ pressure
    Definition: physical_property_model.h:56
    temperature
    @ temperature
    Definition: physical_property_model.h:53
    -
    Parameters::Evaporation
    Evaporation - Defines the subparameters for the evaporation cooling and recoil pressure at the free s...
    Definition: parameters.h:1591
    +
    Parameters::Evaporation
    Evaporation - Defines the subparameters for the evaporation cooling and recoil pressure at the free s...
    Definition: parameters.h:1617
    diff --git a/doxygen/flow__control_8cc_source.html b/doxygen/flow__control_8cc_source.html index ea44b5e615..0b71919e81 100644 --- a/doxygen/flow__control_8cc_source.html +++ b/doxygen/flow__control_8cc_source.html @@ -216,7 +216,7 @@
    FlowControl::save
    void save(std::string prefix)
    Definition: flow_control.cc:103
    FlowControl::FlowControl
    FlowControl(const Parameters::DynamicFlowControl &flow_control)
    Definition: flow_control.cc:6
    flow_control.h
    -
    Parameters::DynamicFlowControl
    FlowControl - Set average velocity on a boundary (CFD) or the domain (CFD-DEM).
    Definition: parameters.h:1549
    +
    Parameters::DynamicFlowControl
    FlowControl - Set average velocity on a boundary (CFD) or the domain (CFD-DEM).
    Definition: parameters.h:1575
    diff --git a/doxygen/flow__control_8h_source.html b/doxygen/flow__control_8h_source.html index 0ae0cbb42c..024bb77251 100644 --- a/doxygen/flow__control_8h_source.html +++ b/doxygen/flow__control_8h_source.html @@ -255,7 +255,7 @@
    FlowControl::proportional_flow_controller
    double proportional_flow_controller(const double &average_velocity_n, const double &dt)
    proportional_flow_controller. This function calculates a beta only with the last step average velocit...
    Definition: flow_control.h:66
    -
    Parameters::DynamicFlowControl
    FlowControl - Set average velocity on a boundary (CFD) or the domain (CFD-DEM).
    Definition: parameters.h:1549
    +
    Parameters::DynamicFlowControl
    FlowControl - Set average velocity on a boundary (CFD) or the domain (CFD-DEM).
    Definition: parameters.h:1575
    diff --git a/doxygen/functions_c.html b/doxygen/functions_c.html index 46b5bf2c1b..00d9d4c61a 100644 --- a/doxygen/functions_c.html +++ b/doxygen/functions_c.html @@ -758,6 +758,9 @@

    - c -