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Error encountered reading the model file #179

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jiuchuyuan opened this issue May 17, 2023 · 2 comments
Open

Error encountered reading the model file #179

jiuchuyuan opened this issue May 17, 2023 · 2 comments

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@jiuchuyuan
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Hi,

When I was using libSBML to read the model file created with CarveMe, I got multiple errors similar to the following error:

10773: (20623) Error A Species object must have the required attributes 'id', 'compartment', 'hasOnlySubstanceUnits', 'boundaryCondition' and 'constant', and may have the optional attributes 'metaid', 'sboTerm', 'name', 'initialAmount', 'initialConcentration', 'substanceUnits' and 'conversionFactor'. No other attributes from the SBML Level 3 Core namespace are permitted on a Species object.
Reference: L3V1 Section 4.6
The required attribute 'boundaryCondition' is missing from the with the id 'M_frdp_c'.

Look forward to your reply! Thank you!

Best,
Zhou

@eromj
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eromj commented Oct 12, 2023

@cdanielmachado any update on this? I'm facing the same issue

@jiuchuyuan
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jiuchuyuan commented Oct 12, 2023 via email

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