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Makefile.am
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bin_PROGRAMS = sciphi # convertTree2Map createSingleCellTree sciphi_test
sciphi_SOURCES = \
src/findBestTrees.cpp
sciphi_CXXFLAGS = \
$(PTHREAD_CFLAGS) $(GSL_CFLAGS)
sciphi_CPPFLAGS = \
$(DLIB_CPPFLAGS) -I$(DLIB_INCLUDEDIR) $(BOOST_CPPFLAGS) @BOOST_UNIT_TEST_FRAMEWORK_CPPFLAGS@
sciphi_LDADD = \
$(GSL_LIBS) $(BOOST_LDFLAGS) $(BOOST_SYSTEM_LIB) $(BOOST_PROGRAM_OPTIONS_LIB) $(BOOST_FILESYSTEM_LIB) $(BOOST_IOSTREAMS_LIB) $(DLIB_LDFLAGS) -lboost_graph -lboost_regex
convertTree2Map_SOURCES = \
src/convertTreeIntoClusterMap.cpp
convertTree2Map_CXXFLAGS = \
$(PTHREAD_CFLAGS) $(GSL_CFLAGS)
convertTree2Map_CPPFLAGS = \
$(BOOST_CPPFLAGS) @BOOST_UNIT_TEST_FRAMEWORK_CPPFLAGS@
convertTree2Map_LDADD = \
$(GSL_LIBS) $(BOOST_LDFLAGS) $(BOOST_SYSTEM_LIB) $(BOOST_PROGRAM_OPTIONS_LIB) $(BOOST_FILESYSTEM_LIB) $(BOOST_IOSTREAMS_LIB) -lboost_graph -lboost_regex
createSingleCellTree_SOURCES = \
src/createSingleCellSeqTree.cpp
createSingleCellTree_CXXFLAGS = \
$(PTHREAD_CFLAGS)
createSingleCellTree_CPPFLAGS = \
-I$(SEQAN_INCLUDEDIR) $(BOOST_CPPFLAGS) $(ZLIB_CFLAGS) @BOOST_UNIT_TEST_FRAMEWORK_CPPFLAGS@
createSingleCellTree_LDADD = \
$(ZLIB_LIBS) $(BOOST_LDFLAGS) $(BOOST_UNIT_TEST_FRAMEWORK_LIB) $(PTHREAD_CFLAGS)
sciphi_test_SOURCES = \
test/sciphi_test.cpp
sciphi_test_CXXFLAGS = \
$(PTHREAD_CFLAGS) $(GSL_CFLAGS)
sciphi_test_CPPFLAGS = \
$(DLIB_CPPFLAGS) -I$(DLIB_INCLUDEDIR) $(BOOST_CPPFLAGS) @BOOST_UNIT_TEST_FRAMEWORK_CPPFLAGS@
sciphi_test_LDADD = \
$(GSL_LIBS) $(BOOST_LDFLAGS) $(BOOST_SYSTEM_LIB) $(BOOST_PROGRAM_OPTIONS_LIB) $(BOOST_FILESYSTEM_LIB) $(BOOST_IOSTREAMS_LIB) $(DLIB_LDFLAGS) $(BOOST_UNIT_TEST_FRAMEWORK_LIB)