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@article{lattila_hybrid_2010,
title = {Hybrid simulation models {\textendash} When, Why, How?},
volume = {37},
issn = {09574174},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0957417410003398},
doi = {10.1016/j.eswa.2010.04.039},
number = {12},
urldate = {2013-06-24},
journal = {Expert Systems with Applications},
author = {L{\"a}ttil{\"a}, Lauri and Hilletofth, Per and Lin, Bishan},
month = {dec},
year = {2010},
pages = {7969--7975}
}
@article{grimm_odd_2010,
title = {The {ODD} protocol: A review and first update},
volume = {221},
issn = {03043800},
shorttitle = {The {ODD} protocol},
url = {http://linkinghub.elsevier.com/retrieve/pii/S030438001000414X},
doi = {10.1016/j.ecolmodel.2010.08.019},
number = {23},
urldate = {2013-06-24},
journal = {Ecological Modelling},
author = {Grimm, Volker and Berger, Uta and DeAngelis, Donald L. and Polhill, J. Gary and Giske, Jarl and Railsback, Steven F.},
month = {nov},
year = {2010},
pages = {2760--2768}
}
@article{topping_opening_2010,
title = {Opening the black box{\textemdash}Development, testing and documentation of a mechanistically rich agent-based model},
volume = {221},
issn = {03043800},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0304380009006346},
doi = {10.1016/j.ecolmodel.2009.09.014},
number = {2},
urldate = {2013-06-24},
journal = {Ecological Modelling},
author = {Topping, Chris J. and H{\o}ye, Toke T. and Olesen, Carsten Riis},
month = {jan},
year = {2010},
pages = {245--255}
}
@article{vonlanthen_eutrophication_2012,
title = {Eutrophication causes speciation reversal in whitefish adaptive radiations},
volume = {482},
issn = {0028-0836, 1476-4687},
url = {http://www.nature.com/doifinder/10.1038/nature10824},
doi = {10.1038/nature10824},
number = {7385},
urldate = {2013-06-25},
journal = {Nature},
author = {Vonlanthen, P. and Bittner, D. and Hudson, A. G. and Young, K. A. and M{\"u}ller, R. and Lundsgaard-Hansen, B. and Roy, D. and Di Piazza, S. and Largiader, C. R. and Seehausen, O.},
month = {feb},
year = {2012},
pages = {357--362}
}
@article{tobler_toxic_2008,
title = {{TOXIC} {HYDROGEN} {SULFIDE} {AND} {DARK} {CAVES}: {PHENOTYPIC} {AND} {GENETIC} {DIVERGENCE} {ACROSS} {TWO} {ABIOTIC} {ENVIRONMENTAL} {GRADIENTS} {IN} \textit{{POECILIA} {MEXICANA}}},
volume = {62},
issn = {00143820, 15585646},
shorttitle = {{TOXIC} {HYDROGEN} {SULFIDE} {AND} {DARK} {CAVES}},
url = {http://doi.wiley.com/10.1111/j.1558-5646.2008.00466.x},
doi = {10.1111/j.1558-5646.2008.00466.x},
number = {10},
urldate = {2013-06-25},
journal = {Evolution},
author = {Tobler, Michael and DeWitt, Thomas J. and Schlupp, Ingo and Garc{\'i}a de Le{\'o}n, Francisco J. and Herrmann, Roger and Feulner, Philine G.D. and Tiedemann, Ralph and Plath, Martin},
month = {oct},
year = {2008},
pages = {2643--2659}
}
@article{riesch_toxic_2010,
title = {Toxic hydrogen sulfide and dark caves: life-history adaptations in a livebearing fish (Poecilia mexicana, Poeciliidae)},
volume = {91},
shorttitle = {Toxic hydrogen sulfide and dark caves},
url = {http://www.esajournals.org/doi/pdf/10.1890/09-1008.1},
number = {5},
urldate = {2013-06-25},
journal = {Ecology},
author = {Riesch, R{\"u}diger and Plath, Martin and Schlupp, Ingo},
year = {2010},
pages = {1494--1505}
}
@inproceedings{gras_ecosim:_2011,
title = {Ecosim: an individual-based platform for studying evolution},
shorttitle = {Ecosim},
url = {http://mitpress.mit.edu/sites/default/files/titles/alife/0262297140chap45.pdf},
urldate = {2013-06-25},
booktitle = {European Conference on Artificial Life},
author = {Gras, R. and Golestani, A. and Hosseini, M. and Khater, M. and Farahani, Y. M. and Mashayekhi, M. and Ibne, S. M. and Sajadi, A. and Salehi, E. and Scott, R.},
year = {2011},
pages = {284--286}
}
@article{_what_2012,
title = {What do we need to know about speciation?},
volume = {27},
issn = {01695347},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0169534711002618},
doi = {10.1016/j.tree.2011.09.002},
number = {1},
urldate = {2013-06-25},
journal = {Trends in Ecology \& Evolution},
month = {jan},
year = {2012},
pages = {27--39}
}
@inproceedings{murdock_identifying_2011,
title = {Identifying species by genetic clustering},
url = {http://www.jamram.net/docs/ecal11-paper.pdf},
urldate = {2013-06-25},
booktitle = {Proceedings of the European Conference on Artificial Life},
author = {Murdock, Jaimie and Yaeger, Larry S.},
year = {2011},
pages = {565--572}
}
@article{stepney_reflecting_2011,
title = {Reflecting on open-ended evolution},
url = {http://www-users.cs.york.ac.uk/susan/bib/ss/nonstd/ecal11-17.pdf},
urldate = {2013-06-25},
journal = {Advances in Artificial Life, {ECAL}},
author = {Stepney, Susan and Hoverd, Tim},
year = {2011}
}
@inproceedings{tomko_many_2011,
title = {Many hands make light work: Group evolution and the emergent division of labour},
shorttitle = {Many hands make light work},
url = {http://www.vootrunner.com/headcube/papers/tomko_et_al2011.pdf},
urldate = {2013-06-25},
booktitle = {Proceedings of the European Conference on Artificial Life},
author = {Tomko, Nicholas and Harvey, Inman and Philippides, Andrew and Virgo, Nathaniel},
year = {2011},
pages = {805--812}
}
@article{plath_locally_2010,
title = {Locally adapted fish populations maintain small-scale genetic differentiation despite perturbation by a catastrophic flood event},
volume = {10},
url = {http://www.biomedcentral.com/1471-2148/10/256},
number = {1},
urldate = {2013-06-25},
journal = {{BMC} evolutionary biology},
author = {Plath, Martin and Hermann, Bernd and Schr{\"o}der, Christiane and Riesch, R{\"u}diger and Tobler, Michael and de Le{\'o}n, Francisco J. Garc{\'i}a and Schlupp, Ingo and Tiedemann, Ralph},
year = {2010},
pages = {256}
}
@article{aguilee_ecological_2011,
title = {Ecological speciation in dynamic landscapes},
volume = {24},
issn = {1010061X},
url = {http://doi.wiley.com/10.1111/j.1420-9101.2011.02392.x},
doi = {10.1111/j.1420-9101.2011.02392.x},
number = {12},
urldate = {2013-06-25},
journal = {Journal of Evolutionary Biology},
author = {Aguil{\'e}E, R. and Lambert, A. and Claessen, D.},
month = {dec},
year = {2011},
pages = {2663--2677}
}
@incollection{aspinall_k-means_2010,
title = {K-means clustering as a speciation mechanism within an individual-based evolving predator-prey ecosystem simulation},
url = {http://link.springer.com/chapter/10.1007/978-3-642-15470-6_33},
urldate = {2013-06-25},
booktitle = {Active Media Technology},
publisher = {Springer},
author = {Aspinall, Adam and Gras, Robin},
year = {2010},
pages = {318--329}
}
@article{bonduriansky_sexual_2011,
title = {Sexual Selection and Conflict as Engines of Ecological Diversification},
volume = {178},
issn = {00030147, 15375323},
url = {http://www.jstor.org/stable/info/10.1086/662665},
doi = {10.1086/662665},
number = {6},
urldate = {2013-06-25},
journal = {The American Naturalist},
author = {Bonduriansky, Russell},
month = {dec},
year = {2011},
pages = {729--745}
}
@article{keller_thermal_2012,
title = {Thermal adaptation and ecological speciation},
volume = {21},
issn = {09621083},
url = {http://doi.wiley.com/10.1111/j.1365-294X.2011.05397.x},
doi = {10.1111/j.1365-294X.2011.05397.x},
number = {4},
urldate = {2013-06-25},
journal = {Molecular Ecology},
author = {Keller, I. and Seehausen, O.},
month = {feb},
year = {2012},
pages = {782--799}
}
@article{kraaijeveld_sexual_2011,
title = {Sexual selection and speciation: the comparative evidence revisited},
volume = {86},
issn = {14647931},
shorttitle = {Sexual selection and speciation},
url = {http://doi.wiley.com/10.1111/j.1469-185X.2010.00150.x},
doi = {10.1111/j.1469-185X.2010.00150.x},
number = {2},
urldate = {2013-06-25},
journal = {Biological Reviews},
author = {Kraaijeveld, Ken and Kraaijeveld-Smit, Femmie J. L. and Maan, Martine E.},
month = {may},
year = {2011},
pages = {367--377}
}
@article{lehman_exploiting_2008,
title = {Exploiting open-endedness to solve problems through the search for novelty},
volume = {11},
url = {http://18.7.25.65/sites/default/files/titles/alife/0262287196chap43.pdf},
urldate = {2013-06-25},
journal = {Artificial Life},
author = {Lehman, Joel and Stanley, Kenneth O.},
year = {2008},
pages = {329}
}
@article{merrill_mate_2011,
title = {{MATE} {PREFERENCE} {ACROSS} {THE} {SPECIATION} {CONTINUUM} {IN} A {CLADE} {OF} {MIMETIC} {BUTTERFLIES}},
volume = {65},
issn = {00143820},
url = {http://doi.wiley.com/10.1111/j.1558-5646.2010.01216.x},
doi = {10.1111/j.1558-5646.2010.01216.x},
number = {5},
urldate = {2013-06-25},
journal = {Evolution},
author = {Merrill, Richard M. and Gompert, Zachariah and Dembeck, Lauren M. and Kronforst, Marcus R. and McMillan, W. Owen and Jiggins, Chris D.},
month = {may},
year = {2011},
pages = {1489--1500}
}
@article{nosil_ecological_2009,
title = {Ecological explanations for (incomplete) speciation},
volume = {24},
issn = {01695347},
url = {http://linkinghub.elsevier.com/retrieve/pii/S016953470900024X},
doi = {10.1016/j.tree.2008.10.011},
number = {3},
urldate = {2013-06-25},
journal = {Trends in Ecology \& Evolution},
author = {Nosil, Patrik and Harmon, Luke J. and Seehausen, Ole},
month = {mar},
year = {2009},
pages = {145--156}
}
@article{paperin_holey_2008,
title = {Holey fitness landscapes and the maintenance of evolutionary diversity},
volume = {11},
url = {http://mitp-webdev.mit.edu/sites/default/files/titles/alife/0262287196chap59.pdf},
urldate = {2013-06-25},
journal = {Artificial Life},
author = {Paperin, Greg and Sadedin, Suzanne and Green, D. G. and Dorin, Alan},
year = {2008},
pages = {450}
}
@article{servedio_magic_2011,
title = {Magic traits in speciation: {\textquoteleft}magic{\textquoteright} but not rare?},
volume = {26},
issn = {01695347},
shorttitle = {Magic traits in speciation},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0169534711001133},
doi = {10.1016/j.tree.2011.04.005},
number = {8},
urldate = {2013-06-25},
journal = {Trends in Ecology \& Evolution},
author = {Servedio, Maria R. and Doorn, G. Sander Van and Kopp, Michael and Frame, Alicia M. and Nosil, Patrik},
month = {aug},
year = {2011},
pages = {389--397}
}
@article{woodberry_species_2008,
title = {Species Selection of Aging for the Sake of Diversity},
volume = {11},
url = {http://18.7.25.65/sites/default/files/titles/alife/0262287196chap92.pdf},
urldate = {2013-06-25},
journal = {Artificial Life},
author = {Woodberry, Owen G. and Korb, Kevin B. and Nicholson, Ann E.},
year = {2008},
pages = {710}
}
@inproceedings{worgan_initial_2008,
title = {Initial modelling of the alternative phenotypes hypothesis},
url = {http://eprints.soton.ac.uk/265771/},
urldate = {2013-06-25},
booktitle = {Proceedings of the Eleventh International Conference on Artificial Life},
author = {Worgan, Simon and Mills, Rob},
year = {2008},
pages = {717--724}
}
@article{yaeger_passive_2011,
title = {Passive and driven trends in the evolution of complexity},
url = {http://arxiv.org/abs/1112.4906},
urldate = {2013-06-25},
journal = {{arXiv} preprint {arXiv}:1112.4906},
author = {Yaeger, Larry and Griffith, Virgil and Sporns, Olaf},
year = {2011}
}
@article{fong_survey_2003,
title = {A survey of socially interactive robots},
volume = {42},
issn = {09218890},
url = {http://linkinghub.elsevier.com/retrieve/pii/S092188900200372X},
doi = {10.1016/S0921-8890(02)00372-X},
number = {3-4},
urldate = {2013-06-25},
journal = {Robotics and Autonomous Systems},
author = {Fong, Terrence and Nourbakhsh, Illah and Dautenhahn, Kerstin},
month = {mar},
year = {2003},
pages = {143--166}
}
@inproceedings{knoester_using_2007,
title = {Using group selection to evolve leadership in populations of self-replicating digital organisms},
url = {http://dl.acm.org/citation.cfm?id=1277016},
urldate = {2013-06-25},
booktitle = {Proceedings of the 9th annual conference on Genetic and evolutionary computation},
author = {Knoester, David B. and McKinley, Philip K. and Ofria, Charles A.},
year = {2007},
pages = {293--300}
}
@article{ostrowski_ecological_2007,
title = {Ecological Specialization and Adaptive Decay in Digital Organisms},
volume = {169},
issn = {0003-0147, 1537-5323},
url = {http://www.jstor.org/stable/10.1086/510211},
doi = {10.1086/510211},
number = {1},
urldate = {2013-06-25},
journal = {The American Naturalist},
author = {Ostrowski, Elizabeth~A. and Ofria, Charles and Lenski, Richard~E.},
month = {jan},
year = {2007},
pages = {E1--E20}
}
@inproceedings{elsberry_cockroaches_2009,
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