upload.resources

#!/bin/bash

set -e -o pipefail

if [ $# -ne 1 ]; then
  echo "usage: $0 PROJECT"
  exit
fi

size="200k"

project=$1
app_folder="${project}:/apps/"
map_folder="${project}:/maps/"
phased_folder="${project}:/phased/"

dx select ${project}

dx mkdir -p ${app_folder} ${map_folder} ${phased_folder}

dx build -y -f -d ${app_folder}/filter-vcfs     apps/filter-vcfs
dx build -y -f -d ${app_folder}/cat-files       apps/cat-files/
dx build -y -f -d ${app_folder}/beagle          apps/beagle/
dx build -y -f -d ${app_folder}/tabix           apps/tabix/
dx build -y -f -d ${app_folder}/phase-ukb-${size} apps/phase-ukb-${size}/

dx upload --path ${map_folder}  maps/plink.chr*.GRCh38.map