From a530cda08dd65183af1c9b9c51792dbd3c46ada9 Mon Sep 17 00:00:00 2001 From: Danny Park Date: Thu, 19 Jan 2023 10:54:53 -0500 Subject: [PATCH] update pangolin --- pipes/WDL/tasks/tasks_sarscov2.wdl | 4 ++-- requirements-modules.txt | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/pipes/WDL/tasks/tasks_sarscov2.wdl b/pipes/WDL/tasks/tasks_sarscov2.wdl index 6891fe07c..6c838a9e4 100644 --- a/pipes/WDL/tasks/tasks_sarscov2.wdl +++ b/pipes/WDL/tasks/tasks_sarscov2.wdl @@ -10,7 +10,7 @@ task pangolin_one_sample { Float? max_ambig String? analysis_mode Boolean update_dbs_now=false - String docker = "quay.io/staphb/pangolin:4.1.3-pdata-1.17" + String docker = "quay.io/staphb/pangolin:4.2-pdata-1.18" } String basename = basename(genome_fasta, ".fasta") Int disk_size = 50 @@ -93,7 +93,7 @@ task pangolin_many_samples { String? analysis_mode Boolean update_dbs_now=false String basename - String docker = "quay.io/staphb/pangolin:4.1.3-pdata-1.17" + String docker = "quay.io/staphb/pangolin:4.2-pdata-1.18" } Int disk_size = 100 command <<< diff --git a/requirements-modules.txt b/requirements-modules.txt index 88a82212c..41d815060 100644 --- a/requirements-modules.txt +++ b/requirements-modules.txt @@ -7,5 +7,5 @@ broadinstitute/beast-beagle-cuda=1.10.5pre broadinstitute/ncbi-tools=2.10.7.10 nextstrain/base=build-20211012T204409Z andersenlabapps/ivar=1.3.1 -quay.io/staphb/pangolin=4.1.3-pdata-1.17 +quay.io/staphb/pangolin=4.2-pdata-1.18 nextstrain/nextclade=2.9.1