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add vcf merge #61

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tomkinsc opened this issue May 7, 2020 · 0 comments
Closed

add vcf merge #61

tomkinsc opened this issue May 7, 2020 · 0 comments
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tomkinsc commented May 7, 2020

We should have a task to merge sample columns from multiple VCFs in the same coordinate space, possibly via bcftools merge.

This can be included downstream of assemble_refbased to merge the vcf outputs of that process, and subsequently call the snpEff task on the merged result.
@dpark01 dpark01 added this to the 2.0.21.4 milestone May 14, 2020
@dpark01 dpark01 removed this from the 2.0.21.4 milestone May 14, 2020
@dpark01 dpark01 closed this as completed May 21, 2020
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